Primers Table
Zebrafish Genetic Map: Primers Page
This table contains the primer sequences for the microsatellite markers on the zebrafish genetic linkage map, as published in Nature Genetics: A Microsatellite Genetic Linkage Map for Zebrafish (Danio rerio), Ela W. Knapik, et al.
The primers are available from Research Genetics.
Primer | LG | Forward sequence | Bases | Reverse sequence | Bases | PCR Product Size |
|---|---|---|---|---|---|---|
BMP4 | 17 | CTGTGAGGAGCTTCCATCACGAA | 23 | GGAATCGGCAGAGGCTGTCTCC | 22 | 160 |
msxD | 21 | AGCTCCGTCTTCACTGACTGACA | 23 | TGTGGTGGACATTAACTCATCCA | 23 | 240 |
Z4 | 14 | TCAGAGGAGCGCATGAAAGT | 20 | CTGAAAACACCCATCACGTG | 20 | 119 |
Z7 | 19 | TCATGAGCAGCGTTTTTCC | 19 | AAAGCACCATCCCACAAAAC | 20 | 145 |
Z13 | 5 | CACGTGCTGATGCAGGAC | 18 | GATGACAGCCAATCAGAGCA | 20 | 144 |
Z16 | 21 | ATACTCAAACACATCCCAGCC | 21 | GAGGTGCACGTCAGCGAC | 18 | 150 |
Z18 | 21 | CTCTTTTGCCTCCTCTCGG | 19 | CAGCCTTAACACTGTGTCTGTG | 22 | 147 |
Z23 | 2 | TGTAGATTAATGCTTTTCTGTGCA | 24 | GCATATGAAGCAGGTCTGCA | 20 | 133 |
Z24 | 15 | CACCTTCACGGTGAGTAGCA | 20 | GTGGAATGGTGTGACTAATGTCA | 23 | 149 |
Z28 | 13 | TCTGGTGGACTCGCTGAAG | 19 | AAGTAAGCGCCACCAGAGTG | 20 | 141 |
Z37 | 15 | GGTGTTCGCGACCAAGTC | 18 | TTTGCGTGGAATTTGAACTG | 20 | 83 |
Z46 | 2 | GCTGTGTGTGCCTCATCTGT | 20 | GCAGACGCTGTACTCCATCA | 20 | 224 |
Z49 | 25 | GATTATCCTCATAAGTACGGGCC | 23 | AGCACATCTTCATCCTGCG | 19 | 216 |
Z106 | 9 | GAGACCGACCGTCTGCTAAC | 20 | TCCAGAGAACACCCTGCTG | 19 | 187 |
Z130 | 23 | ACACGCTGGAGAGCCAAC | 18 | CCAGAACCCACCTGGGAC | 18 | 104 |
Z140 | 8 | ATTTGGCAGATTCCTTCATCA | 21 | GGAACACCTGTGCCCGAG | 18 | 213 |
Z160 | 19 | CGCTACCTGAAGGACACCAT | 20 | CTGCTATTGCTATACTTGTGGGG | 23 | 240 |
Z164 | 1 | TTGCTGTGTGTGTTTCTCAGTG | 22 | TGTTCCATCGCTGAGAAGTG | 20 | 221 |
Z170 | 8 | CTGAAAGTCTTCACATCTGTGACA | 24 | GAATAAAGGTGGGGGGTGTT | 20 | 121 |
Z176 | 23 | CTCCAGAACAGGTTAGACACACC | 23 | CTGAACACCTCGAACCTTTACC | 22 | 219 |
Z177 | 7 | GGAAACTCTCACGCTCGTTC | 20 | ACGGATGTTCCTGTAAACGC | 20 | 143 |
Z178 | 22 | ACCACAAGCGTGTGAGTCTG | 20 | TTGACTGTGGCCTGCTGTAG | 20 | 108 |
Z191 | 7 | AATATAGCGAAGGGACGATCC | 21 | GAGGACTTCAGCAGAAACCG | 20 | 123 |
Z230 | 22 | GGTTCTCCCACCAGCACTAA | 20 | CGACTCAGACTTACTGGTGTGC | 22 | 141 |
Z233 | 25 | CAGTTTTCGGGACCTCTGAG | 20 | TGGATGAAGTTTACGGAGCC | 20 | 148 |
Z241 | 24 | CAATTAAAGGTGCAGTGGAGC | 21 | TTGGCCTCTGCTGTTTCTCT | 20 | 231 |
Z247 | 12 | GATTTACCTGTTTCACAGCATCC | 23 | CATCCTGAGATGTCATCTGATAGA | 24 | 242 |
Z249 | 24 | TCTTCCCCTACAGGCACAGT | 20 | ATGATACGCAGTCAACGTATCG | 22 | 147 |
Z265 | 6 | CCTTCCCTCAAAGAGCGAG | 19 | TGGAGTCGCTCATTAGCAAA | 20 | 113 |
Z266 | 17 | TCCGGCTGACATGAGGAAT | 19 | ACGCTCTGCTTCATGGTCTT | 20 | 212 |
Z342 | 23 | CATTGAGTTTAGACCCCCACA | 21 | TCACTTCTGCTTTATAAGGCACC | 23 | 163 |
Z355 | 10 | CAGCCTGAGCACACAGAGAC | 20 | GCACAGGCCTAATAAGACGC | 30 | 204 |
Z374 | 20 | TTTTAATCCAGCAGCAGATCTG | 22 | CCCAGGTTCACAAACCCTC | 19 | 166 |
Z379 | 5 | AGCCTTTCACTGGCCCTATT | 20 | CAAGGTGGAGTAAAAATCCTGC | 22 | 222 |
Z381 | 17 | AAACGTTGTGATGTGATATTCCC | 23 | TCTCCAGAAGCCTCGTGTG | 19 | 205 |
Z382A B | 7 7 | GTGTCCGTTTTTTCGGTGTT | 20 | TAGCACGCTAACGGCTAACA | 20 | 104 |
Z419 | 3 | ATTATCCAGCACATGACGAGG | 21 | TCTCGCTCCTCACCATCAC | 19 | 120 |
Z450 | 1 | AAGTACAGCATTGTCCACAGTCA | 23 | CAGGGAAACTGCTGATGTTG | 20 | 154 |
Z464 | 25 | ACCTCCACACGGAAAGGAG | 19 | GGTGATGAAAAATTAGCCTTCG | 22 | 156 |
Z470 | 15 | GAGAGCCGAGGTGTGTATGC | 20 | CACTGCCTATTACACCACTGATG | 23 | 139 |
Z531 | 10 | GCAGGTTGCTCTGGTTTCTC | 20 | TTTCCGATGACAGATCGTGA | 20 | 118 |
Z536 | 20 | ATCCAGAGTGTGTCCCAGTTG | 21 | AGGTGTGTCCCACTGACTCC | 20 | 118 |
Z540 | 21 | GTGGCCGTCAGTTCAGCT | 18 | CCTCCTGTCAGGTGAAGCTC | 20 | 127 |
Z553 | 19 |