Linkage Group 08 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
GOF9 | 8 | ATGCTGCCATTATGGTAGTGC | 21 | TTCACTTGGATAAAGTACTGGGTG | 24 | 124* | NA | NA | NA | "Goff, et al., |
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Z140 | 8 | ATTTGGCAGATTCCTTCATCA | 21 | GGAACACCTGTGCCCGAG | 18 | NA | NA | NA | NA |
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Z170 | 8 | CTGAAAGTCTTCACATCTGTGACA | 24 | GAATAAAGGTGGGGGGTGTT | 20 | NA | NA | NA | NA |
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Z789 | 8 | CTCCTGCTGGCCCAGTAAT | 19 | ACTGAACATTCAGGCTTAAATGC | 23 | 201 |
| 203 |
|
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Z870 | 8 | TTCCGGCTCTCAGTGTCTTT | 20 | CCTGACCAGCATAGAGTCATG | 21 | NA | NA | NA | NA |
| |
Z987 | 8 | TCTGGTTTCACATTAACATGTGC | 23 | ATCTGCTATCGGCTCTGTTAGC | 22 | NA | NA | NA | NA |
| |
Z1052 | 8 | CCCATTGGAACTGAGACACCTT | 22 | ACAGGGGGGGCTAATAATTCTG | 22 | 138 | 176 | 142 |
|
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Z1068 | 8 | GGTGAGAAACACAAGAGCAGC | 21 | CAGACCCAGATTCTTCAGCC | 20 | 122 |
| 132 |
|
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Z1231 | 8 | CCCAAATGTACAGGACCGG | 19 | CGCTTTACCTGTTACAGTGCC | 21 | NA | NA | NA | NA | Use at your | |
Z1402 | 8 | GATCAGGGTGCATGTACTGAA | 21 | TCTGCTTTCTGTCAGGGGAT | 20 | 169 | 185 | 179 | 199 |
| |
Z1569 | 8 | GAAAGTAACATGGCATATAAGTCCG | 25 | CCTGGAGCCTGTGTTTTGTT | 20 | NA | NA | NA | NA |
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Z1634 | 8 | AGCCACAGCGCTGGAGATTC | 21 | GTGAGTCCAACACACCGCGT | 20 | NA | NA | NA | NA |
| |
Z1637 | 8 | GGCTTTTGGATGAAGGTTGAGC | 22 | GGAATCACAATGGCAGCAGA | 20 | 105 | 143 | 103 | 109 |
| |
Z3083 | 8 | ATGTTCGATGTTCTGCACTTGC | 22 | GCTGTGAGGCGAACGTGCTA | 20 | NA | NA | NA | NA |
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Z3526 | 8 | AGCTGGTGTATTTCGGAGAGCA | 22 | CACACACTGACGTGCGGATG | 20 | NA | NA | NA | NA |
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Z3885 | 8 | TCCTTGCGAGAGCAAACGTG | 20 | CTGGGATCCACACAATTCCTCC | 22 | NA | NA | NA | NA |
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Z4077 | 8 | TTCACAGCTTCAGTCCTGCTGG | 22 | TCACGTCTCACCAAGAACCAGC | 22 | NA | NA | NA | NA |
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Z4318 | 8 | GACCTAATAAAGTGGCCGGT | 20 | TGGTGAAAGCGCCCATCTTT | 20 | NA | NA | NA | NA | Use at your |
|
Z4323 | 8 | TCTGTCCTCTCGTCCCCGAG | 20 | AAATTAGCACACGTCGCGCA | 20 | NA | NA | NA | NA |
| |
Z4637 | 8 | ATCAATGGATTGGACATGGGTT | 22 | TCTGTGACTCTACAGCGCCCC | 21 | NA | NA | NA | NA |
| |
Z4956 | 8 | GGGGAACGGAGGTCGAAATC | 20 | GTTGCGAGCTCCCAGCAAAC | 20 | 263 |
| 239 |
|
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Z5081 | 8 | GCCCCCCTGAATTATTAGCACC | 22 | CGGTGAAGTTACGGTACCATGA | 22 | 211 |
| 189 |
|
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Z6058 | 8 | TAACCGGACTCACCAGAACC | 20 | AGACGGGGCTGAGATTATTG | 20 | 310 |
| 306 |
|
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Z6763 | 8 | TGATGACCTCCTGACAGTCG | 20 | ACCCAGAGGTAAGACGCAGG | 20 | 133 |
| 119 | 121 |
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Z6764 | 8 | ACTTGAGAGGAATCAAGCAAGC | 22 | AGGACAGTATGACTGCAGTCTG | 22 | 155 | 197 | 161 |
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Z6867 | 8 | CATCTTACACTGAGTACAGCGG | 22 | ATCCACTGCAGTGTTTATCCG | 21 | ? |
| ? |
|
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Z7130 | 8 | GGAGTGTATTTGGGGCTTGA | 20 | CAATACTCCCTCCCACAGGA | 20 | 329 |
| 185 |
|
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Z7370 | 8 | GCAACAACCAATATTTGCCA | 20 | AAGTCCTGACTCGAACTTCCC | 21 | 157 |
| 131 |
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Z7535 | 8 | TAGGCATGATGTTCAGAGCG | 20 | TCACTGCAGTGTTGGAGGAG | 20 | 95 | 137 | 93 | 103 |
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Z7642 | 8 | CTGAGGGTGAACTGTAGAAAGTG | 23 | GATTGCACAAAGGAGGGTGT | 20 | 191 | 199 | 113 | 121 |
| |
Z7671 | 8 | ATCATTGGAGCAGATGAGTGG | 21 | GCCATGTGAAAGGGCATC | 18 | 231 |
| 239 | 255 |
| |
Z7819 | 8 | TTTTCATCTGCTCCCCAGTT | 20 | TTCACATGGACAACAGTGCA | 20 | 146 | 134 | 156 |
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Z7856 | 8 | CAGCAAACCCTCTGAACACA | 20 | CTGGCACACAGACAAGAACA | 20 | 128 |
| 184 | 196 |
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Z7962 | 8 | AATCAATAACTCAGGCAGGCA | 21 | ATACGCGCACGTCTCTCTTT | 20 | 197 | 223 | 177 | 255 |
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Z8474 | 8 | CCCACATCAGGTCAGGAACT | 20 | TCCTGCTTCACATGCTGAAC | 20 | 271 | ? | 283 | 317 |
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Z8703 | 8 | GGCTGAGGATCATGTTTCGT | 20 | GGGTGAATGTATGACATTTTGG | 22 | 284 |
| 240 | 258 |
| |
Z8770 | 8 | GCACAGCATGGCTCTTTGTA | 20 | TCCAAAATTCCACTTCTGGC | 20 | 264 |
| 190 |
|
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Z9006 | 8 | AAAGTGAAATCAATCCCACCC | 21 | TTTCTCGTTTTCTCCCTCACA | 21 | 218 | 222 | 178 | 198 |
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Z9279 | 8 | TGCATAAAGTCAGGAGGTTCA | 21 | TCTGCGCTTAACAATGCACT | 20 | 150 | 154 | 144 | 166 |
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Z9420 | 8 | CGCCATACAGCAGAAACTCA | 20 | TGGCCAGTGCTGATTTATTC | 20 | 140 |
| 138 | n |
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Z9637 | 8 | AGTGACAGCACCATGTTATTGG | 22 | ACCACTAGGGACGTCAATGC | 20 | 160 |
| 184 |
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Z10048 | 8 | GCAGCTTTTACTCCCAGTGC | 20 | CTTCATTGGTCATGTGTCTGG | 21 | 235 |
| 223 |
|
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Z10121 | 8 | GCATTCACTGGAGAAGCACA | 20 | CTGAGCAGAAAAGCAGCCTT | 20 | 100 |
| 106 |
|
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Z10337 | 8 | CTCCACTCACTGAAGGAGGC | 20 | GCGCTACATGAGAGTCCTCC | 20 | 297 |
| 299 | 303 |
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Z10546 | 8 | GCAACCAATGGGATTATGCT | 20 | GGTTGATGGAGAGGACAGGA | 20 | 188 | 222 | 176 | 200 |
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Z10731 | 8 | TTGAGTCAGTGAATCTGAGCTG | 22 | GCGGACGCAGGTACAACAT | 19 | 183 | 189 | 179 | 181 |
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Z10868 | 8 | TGGTGGAAAATGACACTCGA | 20 | TGTCTCCTGGTTTAGCCACC | 20 | 213 | 281 | 209 | 229 |
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Z10929 | 8 | GCACACCATCATGATTGAGG | 20 | TGTGTTTCATCACGGTTTGC | 20 | 141 | 161 | 113 | 123 |
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Z11001 | 8 | GGATCTGACAGGGGAGATCA | 20 | CGAGGTGTTTTTCTCTCATGC | 21 | 149 | 167 | 175 |
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Z11148 | 8 | TGCTGTCTTACCTATTTCAGCC | 22 | GATAACATGCAGACTCGCCA | 20 | 83 | 113 | 91 | 95 |
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Z11237 | 8 | CCACAGGCACCCTCATCAT | 19 | TTGAATAGCTGGGGTTACGG | 20 | 163 | ? | 219 |
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Z11383 | 8 | GAGGACTGGCTTCTGTACGC | 20 | CACTGGAGGGCAACACCTAT | 20 | ? | ? | ? | ? |
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Z11492 | 8 | CTGCTGAAGGAGCTGAGCTT | 20 | CAAGAGCTCAGACGAGAGGG | 20 | 127 | 189 | 113 | 117 |
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Z11623 | 8 | GCTAAGAAAGACGCATTACGC | 21 | TTATGCGTGTTGAATTTGAAGG | 22 |
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Z11641 | 8 | GCTCTGCAGGGGTTAAACTG | 20 | ACCGAACATCCACACAGACA | 20 | 222 | 252 | 188 | 198 |
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Z11922 | 8 | GTGATGATGAAGGTGGGCTT | 20 | GGGCTACAGCTTCCACTGAG | 20 | 238 | 266 | 250 | 300 |
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Z11946 | 8 | TCGGCTAATGACACCTACCC | 20 | TCTGGAGCCCTAAAGGGATT | 20 | 294 |
| 258 | 318 |
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Z11948 | 8 | CAGTTCAGTGATGGTCACTCG | 21 | TTCAGTCTGTAATTGCAGGTCG | 22 | 251 | 277 | 221 |
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Z13288 | 8 | AGTCTCACGGTGAGTCTGACA | 21 | GGCAGCTTTCCCATCATG | 18 | 156 | 162 | 154 | 170 |
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Z13360 | 8 | GCATTCACTCATCATCAGCG | 20 | CATACAAAAGATACAGGCATGCA | 23 | 126 | 142 | 132 | 148 |
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Z13412 | 8 | TGGTAAGGGAAGGAATGACG | 20 | GCCTGTCATACCGCTCTGAT | 20 | 252 |
| 258 |
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Z13418 | 8 | TCTCAGCAGCTGTTGATTGG | 20 | TGCAGAGGGGTTTAATCCAG | 20 | 217 |
| 205 | 207 |
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Z13565 | 8 | ACTCACCCACAGGGACTCAC | 20 | GATCAAACCGGCATTGTGAT | 20 | 124 |
| 132 | 200 |
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Z13984 | 8 | GCTTCAAATCTCATGGAGCC | 20 | GTGAAACAGCCTGGCAAAAT | 20 | ? |
| ? |
|
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Z14025 | 8 | TCTCATATCCTCCAGCCCAC | 20 | CCTATTGACTCTGTAGACCCCG | 22 | 161 |
| 167 |
|
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Z20106 | 8 | GAAGCAGGCTCTGTTCATCC | 20 | AACGCATGAGGAGTGTGTTG | 20 | ? | ? | ? | ? |
| |
Z20113 | 8 | TGACGTCACACATAGACCCC | 20 | CATGCCTTGCGTTTATTGTG | 20 | ? |
| ? |
|
| |
Z20180 | 8 | CCTGCTCTGACCCATCTCTC | 20 | GAGAAAGCAGCCAAACGAAC | 20 | 205 | 243 | 203 | 231 |
| |
Z21115 | 8 | AAGGTTTCTCAATGCCAGAA | 20 | CATCCTTGCTTTGGTCACAA | 20 | 300 | 336 | 296 |
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Z21315 | 8 | CACAACACATTTCTGTTGTGGTC | 23 | GCGCAAGTTTGTTTAGAGGC | 20 | NA | NA | NA | NA |
| |
Z21390 | 8 | CAAAAACACAGAACTGGGATTG | 22 | GTGGGAATTGGACTCAGGAA | 20 | 165 |
| 137 | 145 |
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Z21465 | 8 | AGGCAACCATAGCAACCATC | 20 | GCTCCCCATCTCTGAGTCTG | 20 | 164 |
| 170 | 188 |
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Z21483 | 8 | TTTGCATGTGCCTCAAAAAG | 20 | TCCACGAAATCATCCTCACA | 20 | 112 |
| 120 | 206 |
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Z22270 | 8 | CCCCTTTCGAAAAGACATCA | 20 | TGCTGAACATCAGAGCTGCT | 20 | 194 | 246 | 198 | 238 |
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Z22307 | 8 | CCATGCAGTCCAAATGCATA | 20 | ATTCATCTTGCTCCCCACAG | 20 | 223 |
| 205 | 215 |
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Z22483 | 8 | ATGCCCATCTGACAACCAAT | 20 | CTGTCTCTCCCAGAAGGACG | 20 | 143 |
| 137 |
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Z23009 | 8 | TGCATGACCTGCTTCTCAAC | 20 | GCTTTCACAACTGCCGCTAT | 20 | NA | NA | NA | NA |
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Z23039 | 8 | CCCTACTGTGAGCATGAGCA | 20 | GAACTGAGAGAATAGCAGGACGA | 23 | NA | NA | NA | NA |
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GOF13 | 8 | CTGGCCTTTGGTTTATCATACATT | 24 | CATGGATTACTTTCACTAAGCATG | 24 | 208* | NA | NA | NA | "Goff, et al., |
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Legend
Table generated Wed Oct 7 16:28:07 1998
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