Linkage Group 12 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Z10457B | 12 | ATATTTCTCCGGTGGTGACG | 20 | GCCAAACACACACAGATTCG | 20 | NA | NA | NA | NA |
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Z247 | 12 | GATTTACCTGTTTCACAGCATCC | 23 | CATCCTGAGATGTCATCTGATAGA | 24 | NA | NA | NA | NA |
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Z937 | 12 | AGAGCTAGCGCTGAGCTAACA | 21 | TCTCTCTGTTCATCAGCAGCA | 21 | NA | NA | NA | NA |
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Z1141 | 12 | TCTGTCCTGTGCGCAGAG | 18 | AGTTCCAGTGCAGACGGTG | 19 | 138 |
| 130 | 140 |
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Z1146 | 12 | ATGCCACCCCTCTCCTTC | 18 | TGCCAACATGCTAACAATATCC | 22 | 144 |
| 138 | 142 |
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Z1176 | 12 | GAGGATTTAATCATCATTTGCTCC | 24 | AAACACCACGATCAGCAGC | 19 | NA | NA | NA | NA |
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Z1179 | 12 | CAGGGAACCGTCACATTCAGC | 21 | TCTGCAGACTCCCACTGACCC | 21 | NA | NA | NA | NA |
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Z1225 | 12 | CGAGCCGATAATGAATATACAGC | 23 | CCACCGTGACACCCTTAATT | 20 | NA | NA | NA | NA |
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Z1312 | 12 | AGGACAACACCTGCAGCC | 18 | TGGGATGAGCTGAAGTTCCT | 20 | 139 | 181 | 139 |
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Z1358 | 12 | TAATGACAGGCTGCACATCTG | 21 | GGAGCAGGGTCTGAGGGT | 18 | NA | NA | NA | NA |
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Z1365 | 12 | GCAACCGTTGTGGTGTCC | 18 | CTTCCAGAGCGCTGTCCC | 18 | NA | NA | NA | NA |
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Z1400 | 12 | CCGCTGTACGCCTTACATG | 19 | AACCTGTAGAGTCCTCAGCCC | 21 | 89 |
| 93 |
|
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Z1473 | 12 | CAACTGGAAGGGCACGAG | 18 | ACTAAACTGGACTAGTTTGCC | 21 | 196 | 210 | 192 |
|
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Z1778 | 12 | AAGCTGGCGTGAAGAATATTGG | 22 | CAGGAGTTGATGCCAGCGGG | 20 | NA | NA | NA | NA |
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Z1804 | 12 | TGCATGGCCGTGTTCGTAAC | 20 | TGCTCGACCTCTGAGCCTTT | 20 | NA | NA | NA | NA |
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Z3321 | 12 | AATACGCAAACCGTGAGGAC | 20 | TGATCAGTGTCGTAAACCTTGA | 22 | NA | NA | NA | NA |
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Z3467 | 12 | ACTGCGTCACCTGTATGCCTG | 21 | TCTGGGGACTGATTCACAGGTG | 22 | 143 |
| 159 | 167 |
| ||||
Z3690 | 12 | AAGCCATTCCTTCCATTCTTCA | 22 | CCCCACAATTAAAGCTGACAGG | 22 | 156 |
| 182 |
|
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Z3801 | 12 | GGTGCTTGTCACATTCCTGCA | 21 | AGGATGGATGTGAGCCTCTTGC | 22 | 183 |
| 179 | 209 |
| ||||
Z4147 | 12 | TCAGTTTGGACTGAGGAGCGC | 21 | TCAGCACTACAGGGACAGCAGG | 22 | NA | NA | NA | NA | Use at your | ||||
Z4188 | 12 | GTAGTTGAATGCCGAATTGGCC | 22 | GAACACCTGCGCATCCACAG | 20 | 207 |
| 203 |
|
| ||||
Z4259 | 12 | ACCACGCTTTTTGTGGACTCTG | 22 | AGGGGGGAGAGCATGCTAGG | 20 | NA | NA | NA | NA | Use at your | ||||
Z4325 | 12 | GAATCACGACTGGCCATCTGG | 21 | GGAGCCGTGGAGCCTACAGA | 20 | 129 |
| 135 | NA |
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Z4373 | 12 | AGCTTTGAAATTAGAGCG | 18 | ATGAGTCAATGTTCTGCTC | 19 | NA | NA | NA | NA |
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Z4397 | 12 | TTGAGGGGAAACAGAAGCAACC | 22 | TCACCCGATTTCCCTAACATCC | 22 | 298 |
| 234 |
|
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Z4499 | 12 | AAAAGGAGCCATGTGGCAGC | 20 | ACGGCTTGACATGGCACTCA | 20 | NA | NA | NA | NA |
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Z4568 | 12 | TCTCATTCAGACACTCCGGCC | 21 | CCCTTCAGCCGGCATAGAAA | 20 | NA | NA | NA | NA |
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Z4634 | 12 | CGCAATACTGAAACACAGCAGC | 22 | AACGGGTCAGTTTCAGAGAGGC | 22 | NA | NA | NA | NA |
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Z4830 | 12 | TGTTTCCTTTTGCCTGTATGG | 21 | TTTGGGGCAATAGGTGAAAG | 20 | 162 |
| 176 | 288 |
| ||||
Z4847 | 12 | GTTGGCGGTTTATTCCGCTG | 20 | TGGTTCCCGCACATGACAGT | 20 | NA | NA | NA | NA |
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Z5179 | 12 | CTGAGCTGATGCTGGAGCCG | 20 | CGTCCATTCGCAGAGCGGCT | 20 | NA | NA | NA | NA |
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Z6264 | 12 | AACCACTCCATAAGCGTCTCA | 21 | ATTTAGAGGCACATCTTCAGCC | 22 | 209 |
| 263 | 305 |
| ||||
Z6442 | 12 | CTCGTCGTCACGTAGCATGT | 20 | GTGAGAACATGGTCTGAGATGG | 22 | 127 |
| 123 | 145 |
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Z6691 | 12 | AAGGTCAAAATTCTAAATTGACTGG | 25 | TGTGTAAGTGTTTGGCAGGG | 20 | 145 | 157 | 143 | 159 |
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Z6762 | 12 | TCACAATCATTATCCGTGTGTG | 22 | GGAGTGGAGTTGCTGTCACA | 20 | 148 |
| 206 | ? |
| ||||
Z6920 | 12 | ATCAAGGTGAGTATGCAAAGGT | 22 | CAGCCCCGAATGTAATGC | 18 | 224 |
| 200 | 228 |
| ||||
Z7042 | 12 | CTGCCCTCTAGAGGTGATGC | 20 | GCCGACAGCAATATCTGAATG | 21 | 178 |
| 114 | 200 |
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Z7135 | 12 | ATGCCAGAACCCTCAACAAG | 20 | ATGCTGCTGTTTGTGTCAGG | 20 | 231 |
| 197 | 259 |
| ||||
Z7136 | 12 | TGCTGAACTGTATACCTGATGCT | 23 | AACGTCACGCTGTTCATCTG | 20 | 170 |
| 194 |
|
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Z7328 | 12 | AAAGACTCCTGTGTGTGTTCAGTT | 24 | TTTCCAGAGGTCAGGAAACG | 20 | 195 |
| 141 | 351 |
| ||||
Z7409 | 12 | TGTATTCTGGACACTCGTCTGG | 22 | TCCTTAGCACATCTGCATGC | 20 | ? | ? | ? |
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Z7576 | 12 | AATGATGAAGGTCACCGCTC | 20 | TCCCTTTCCCACAGTCTGAC | 20 | 188 |
| 124 | 176 |
| ||||
Z7834 | 12 | CAAACACTCTCTAGAGGAAGAACG | 24 | GCCCTGCACTCCCAATAAAT | 20 | 281 |
| 217 | 245 |
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Z8254 | 12 | TGTTTGGTTTCATTCGTCGA | 20 | TGGTGTATTACAAACAGGAGCG | 22 | 246 |
| 240 | 252 |
| ||||
Z8344 | 12 | GTCCCCAAACGGGATATAGG | 20 | TGTTTCTCCACTCCTCCTTCA | 21 | 144 | 152 | 148 | 174 |
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Z8377 | 12 | TGTTGTCAGGTATGAATCTGCC | 22 | TGACAGGTTCTCTGTGGTGC | 20 | 106 |
| 130 |
|
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Z8450 | 12 | GGCTGAATGATATCGCGAAT | 20 | ATTTTGTCAGCCAAACCCAG | 20 | 197 |
| 231 | 281 |
| ||||
Z8460 | 12 | TGGTGGTGTGGAAAATTTCA | 20 | ATGACCAACCGTGAGGAAAG | 20 | 224 |
| 188 | 254 |
| ||||
Z8464 | 12 | CCGCTGCATATATGAGGGTT | 20 | GTGCCAAAGGCAAATATTCG | 20 | NA | NA | NA | NA |
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Z8755 | 12 | GCATTTCTGGTCCTTTGAGC | 20 | TGCTGTTTCACACTGTTGCA | 20 | 83 |
| 117 | 123 |
| ||||
Z8886 | 12 | CTGCAGCCCTTGTCTAGACC | 20 | GGGTCTTTACACACTGGCAGA | 21 | 94 |
| 106 | 116 |
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Z8947 | 12 | AAAGTGTCTCTCAGGATGCCA | 21 | GGCCTAATCACTCCTGTACTCAA | 23 | NA | NA | NA | NA |
| ||||
Z9021 | 12 | TAAAGCAGGGATCCCATTTG | 20 | CCAGCTGGGACTTGAACCT | 19 | 242 |
| 256 | 268 |
| ||||
Z9061 | 12 | GTCCCCAAAATGCTTCTTGA | 20 | TCATGCATGTTTAGGACGGA | 20 | 370 |
| 300 |
|
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Z9114 | 12 | ACAACTCAGCGTATTTTAGCCC | 22 | GCCATGAGAACAGAGGAGGT | 20 | 150 |
| 164 |
|
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Z9172 | 12 | TCCTCCGAGTGCTCTGATTT | 20 | GAAACACCCATACATCCTCACA | 22 | 134 |
| 136 | 142 |
| ||||
Z9251 | 12 | CAAAGGGACTGAGCTGAAGG | 20 | GCCTCATTGATGAATATTCCTG | 22 | 154 |
| 160 | 172 |
| ||||
Z9416 | 12 | GCTGATCCGATCATGTCCAT | 20 | AATTTGTGAAGCGGAAGGTG | 20 | NA | NA | NA | NA |
| ||||
Z9557 | 12 | AGCTGTTCCAGAGCAGCATT | 20 | CCCCATGATTGACAGAAACC | 20 | ? |
| ? |
|
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Z9596 | 12 | CAGCTGCTGATGTCCTCCTT | 20 | AGAAGCGCTGAAGCATGACT | 20 | ? |
| ? | ? |
| ||||
Z9891 | 12 | GCATGGTTGAATGCATTTGA | 20 | ATGCTGTTGTGCTCTGCATC | 20 | ? |
| ? |
|
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Z10122 | 12 | AATTGTGGCACAACTGGACA | 20 | GCAGAGAATTAGCGGGTTTG | 20 | 254 |
| 314 |
|
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Z10225 | 12 | CAATAGGAAGAGGAAGCCCC | 20 | CGCGATTATCATCAAGCATG | 20 | 117 |
| 99 |
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Z10352 | 12 | TGGCTGACAGGAAACACAGA | 20 | TACCATCGCTGACAATCGAG | 20 | 176 |
| 174 |
|
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Z10364 | 12 | TACGTGGGCGATGATGTAAA | 20 | GGCAGACCCCTCACTGTG | 18 | 169 |
| 175 | 189 |
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Z10445 | 12 | TTCCGGACCCTGTCAGTG | 18 | CACCTGACCGGGAGAGATAA | 20 | 182 |
| 142 | 158 |
| ||||
Z10601 | 12 | CCAGAATTCATCGTTCACTGTT | 22 | TGCACTGATCAGATGAACTGG | 21 | 144 |
| 136 | 158 |
| ||||
Z10684 | 12 | AGATTTGCTTTGGCAGTGCT | 20 | ACAGCACTTCACAGCAGGTG | 20 | 260 |
| 266 | 360 |
| ||||
Z10806 | 12 | GACGAGCCTCTGAGGAGGAT | 20 | ATTTACCCTCAGGCGCTTTT | 20 | 239 |
| 205 | 213 |
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Z11079 | 12 | GTGGTCAGCATGGAGAGACC | 20 | TACTGCAGGGGTTGAGCTCT | 20 | 232 |
| 210 |
|
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Z11124 | 12 | GACACTCGGGTGGGCTTATA | 20 | TGTTGGAGAGAGTGTGGCTG | 20 | 149 |
| 147 | 157 |
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Z11136 | 12 | TGTTGATGCTTTCTCAACGG | 20 | GCCTGTGTTCTTGTTTTGAAAG | 22 | 196 | 240 | 200 | 236 |
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Z11518 | 12 | GCACCGACAGACAGCTCAT | 19 | GAAAACACCAACACACGCTG | 20 | 140 |
| 160 | 168 |
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Z11521 | 12 | TGCAGTTCATATGAGCAGGG | 20 | TTTGGCCCTTCAGAGTTGAG | 20 | 253 |
| 207 | 237 |
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Z11549 | 12 | TCTTACCGGAGCAACTGCTT | 20 | TCGAAGTGACACAAAAGAGAGC | 22 | 145 |
| 167 | 183 |
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Z11611.1 | 12 | AAAAACACAATGGCTCCGTC | 20 | CCTGAGAGGAGTCTGATGGC | 20 | 197 |
| 149 | 299 |
| ||||
Z11782 | 12 | GAGAATCAGAGCCGCATTGT | 20 | AGACGCAAACCAAGAGCAGT | 20 | 178 |
| 146 |
|
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Z11903 | 12 | TGATGGGTTGAGCACTGATT | 20 | GCTCTGGTCTGGTTCAGGAG | 20 | 227 |
| 205 | 215 |
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Z13218 | 12 | TTGATGACGCTCTGATCCTG | 20 | TCTGCTGACCTTGTGGTCTG | 20 | 237 |
| 215 | 247 |
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Z13252 | 12 | GTTGGGTGTAGGGGTAGGGT | 20 | TCCTCAAACACCAACAGAAGG | 21 | 224 |
| 218 | 228 |
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Z13276 | 12 | GGGTGTTTTCCAGTGATGCA | 20 | GCACTGTTTGCTTGCAAAGA | 20 | 159 |
| 169 |
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Z13675 | 12 | GGATCCTCCAGCTCTGCTAA | 20 | AGCGCTGATGCTGCATATAC | 20 | 173 |
| 173 | 181 |
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Z13938 | 12 | GCACAGGAGACGCACAGTAA | 20 | GAGATCAGTGACATCGCCAG | 20 | ? |
| ? | ? |
| ||||
Z20142 | 12 | TTGGTGCACAGGAACTTCTG | 20 | ACTCCTCCAGCACCCACCTA | 20 | 199 | 235 | 217 | 339 |
| ||||
Z20406 | 12 | CAATTAACACCGAGGCCTGT | 20 | TGTGCTGAAGCAGCAGAGAT | 20 | 167 |
| 163 | 175 |
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Z21271 | 12 | TCCACAGGGCAATATGAAGA | 20 | CAGACAGAGGAGCAGCAGTG | 20 | 216 |
| 194 | 202 |
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Z21677 | 12 | AACGTAAAGCCTGTTTTCGC | 20 | ACCTGCCACTTCAGCAGTTC | 20 | 134 |
| 126 | 128 |
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Z21911 | 12 | ACCGAGACAGGGAGGATTTT | 20 | CTCCTCAGTTTTGTCCCAGC | 20 | 207 |
| 219 | 287 |
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Z22103 | 12 | AGCTTTCAGAGGAGGATGCA | 20 | TGTTGCCATGAGAGGAATCA | 20 | 186 |
| 176 | 262 |
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Z22333 | 12 | TGTTATTCTGCTGTCGCCTG | 20 | CTGCAGGTAGCCAGAGTTCC | 20 | 193 |
| 181 | 187 |
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Z22369 | 12 | CTCTGCCATGAGATCATCCA | 20 | TTCAAAACCCTCTCCATTGC | 20 | 170 |
| 164 | 178 |
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Z22518 | 12 | AGCAAACACCAATCGTTTCC | 20 | TGGAAGTGATCAATTGGCTG | 20 | 206 |
| 204 | 216 |
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Z22666 | 12 | CATGGGGAGCAGAGAGAGAC | 20 | GAACCAGAATCCTCTGCTGC | 20 | NA | NA | NA | NA |
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Legend
Table generated Wed Oct 7 16:28:07 1998
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