Linkage Group 17 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Z266 | 17 | TCCGGCTGACATGAGGAAT | 19 | ACGCTCTGCTTCATGGTCTT | 20 | 202 | 212 | 192 |
|
|
| ||
Z381 | 17 | AAACGTTGTGATGTGATATTCCC | 23 | TCTCCAGAAGCCTCGTGTG | 19 | NA | NA | NA | NA |
| |||
Z652 | 17 | AGAGAGTGAGCTCTGGAACCC | 21 | CACTCTTGAAGATGGCAGAGG | 21 | 128 |
| 140 |
|
| |||
Z852 | 17 | CCAGACTAACCAGACCTGAACC | 22 | GAACATACCTGAACAGAAAACACG | 24 | NA | NA | NA | NA | Use at your | |||
Z1278 | 17 | TCTCCAACGACAACAAACTG | 20 | ACGTGGAACAGGCTATAAAACA | 22 | NA | NA | NA | NA |
| |||
Z1408 | 17 | AATTCTGAAATTAAGATGTTGACCG | 25 | GAAAACGCACATCACGTGAC | 20 | 101 |
| 280 |
|
| |||
Z1411 | 17 | GCAGCTGAAACATCCAAACA | 20 | CTAAAGACATGCAGTAAATTGAGTAGA | 27 | 144 |
| 112 |
|
|
| ||
Z1440 | 17 | GTTCCCCTTCCCCACCAGTC | 20 | TCCTCACTGCTGTGATGGCT | 20 | NA | NA | NA | NA |
| |||
Z1490 | 17 | TGGTGTCCATGTAAACGTGCTC | 22 | GCCAGCGCAACATCTCTGAA | 20 | 137 |
| 147 | NA |
| |||
Z1928 | 17 | GATGACGACATGAACCTGGGC | 21 | CCACAACACCCTCCAGACCC | 20 | NA | NA | NA | NA |
|
| ||
Z1985 | 17 | ACAGCAGATGCCCTTCCAGC | 20 | AGTTAAGGTGCTGCGGTGGC | 20 | NA | NA | NA | NA | Use at your | |||
Z1990 | 17 | GGGGCTAATCTCAGGCTAAACC | 22 | TGCACCATCAGAGGCTGCGA | 20 | NA | NA | NA | NA |
| |||
Z3123 | 17 | CCTATGGGGAGTCCTGTGAACC | 22 | CTTCTGGCCTGTGCGGATTC | 20 | NA | NA | NA | NA |
|
| ||
Z3165 | 17 | TCAGATAATGCAATCCTTGGC | 21 | TTGGTCATTGGATGCAGAAA | 20 | 222 |
| 176 |
|
| |||
Z3894 | 17 | CGTGAGGTGGCTCATATCAGG | 21 | CTGACCCACACCTAATGATCCC | 22 | NA | NA | NA | NA |
| |||
Z4053 | 17 | TGGCGACATCTGCGATGTTT | 20 | GGAAAGCGTCTGCCTCACGT | 20 | NA | NA | NA | NA |
| |||
Z4268 | 17 | GCTGCGTTACTCACCGAGAGG | 21 | AGCCAGCTGAATTCCTGAAAGC | 22 | NA | NA | NA | NA |
| |||
Z4314 | 17 | GCACAAAACCTCACATGCGG | 20 | GCTTCACCGTACCCACAGGG | 20 | NA | NA | NA | NA |
| |||
Z4332 | 17 | TAGGGTTGGGGTAGGGCCAT | 20 | TGGAATTGGAGAACATACCCCA | 22 | 175 |
| 165 |
|
| |||
Z4640 | 17 | ATTGTGACATTTTTGCATCGCA | 22 | GCAACCCATCTCTGGGAAACA | 21 | 147 |
| 141 |
|
| |||
Z4853 | 17 | AATGAATTTTGGCGTGGCGC | 20 | CCTGCTGTTGCAACCACTGA | 20 | 399 |
| n |
| Use at your | |||
Z4862 | 17 | ATGACCCTTCTGTCGGAGCG | 20 | AGCCTGTCACCATTCACTGCC | 21 | 177 |
| 173 |
|
| |||
Z5504 | 17 | AAAGCCGAATTGCTCAAATCAT | 22 | GGTAATGGCCCAGCCCTGAT | 20 | NA | NA | NA | NA |
| |||
Z5679 | 17 | TGGGTTTTCCATCCTCACGG | 20 | TGGCTGTGCTTCAGCAGGTG | 20 | NA | NA | NA | NA |
| |||
Z6010 | 17 | CTGCGACCGTGAGTGAAGT | 19 | CCAACAGCACTCTGAGGACA | 20 | 119 | 133 | 158 |
|
| |||
Z6287 | 17 | TGAAATTATGGCACAGTCAAGG | 22 | TCGGTCAGTGGTGTGAACAT | 20 | 170 |
| 150 |
|
| |||
Z6290 | 17 | TGCAAGCTTTCCTCTGGTTT | 20 | GAAACACAACTGCATGCCC | 19 | 176 |
| 170 |
|
| |||
Z6359 | 17 | CCATGGTGAAATGCATGCT | 19 | TGGCATGCCCAAATGTTAC | 19 | 326 |
| 366 |
|
| |||
Z6454 | 17 | TCCCTCATTATCATCCGAGTG | 21 | GTTGCTGCTTTAGGTCAGGC | 20 | 182 |
| 190 |
|
| |||
Z6561 | 17 | TGACTGAATGAATGGAGCAG | 20 | GCACTGTTGGGGCATAAATA | 20 | 95 | ? | 121 |
|
| |||
Z6603 | 17 | TCTGTTGAACATCATTTGGGA | 21 | GACGTCTGTTATGTGGATTGAC | 22 | 236 |
| 184 |
|
| |||
Z6884 | 17 | TCAAACTGTTTGAGGAAACCG | 21 | GTTGCTCTTGAAACATGACATG | 22 | 365 |
| 359 |
|
| |||
Z7170 | 17 | GGCGAATAGGATTCGACAAA | 20 | TCATGGAGATGAGTGAGTTGCT | 22 | 184 |
| 152 |
|
| |||
Z7266 | 17 | ACACAGATGAAGACCACAGGG | 21 | TTTACTGCATCAGTGAGCGG | 20 | 131 | 133 | 137 |
|
| |||
Z7295 | 17 | CTCTGCTTCTGACTGTATTGTCA | 23 | AGTGCAGATGCAGACGTGTC | 20 | 169 | 191 | 231 |
|
| |||
Z7625 | 17 | CAAAACTTCTGGCTTCCTGC | 20 | CATTAACTCTCCTCCGCTGC | 20 | 258 | 280 | 234 |
|
| |||
Z7659 | 17 | ACAATAATGGCAGGACAGGC | 20 | ACGTTATTGTGGAACCAGCA | 20 | 243 |
| 215 |
|
| |||
Z8228 | 17 | TGTCTGAATGCTGCATATGTTG | 22 | TGTCTGTGAAGCCGAAGATG | 20 | 146 | 156 | 164 |
|
| |||
Z8771 | 17 | CTTTGTTCTGATGGCGGATT | 20 | CAACATCACGTGTTTTCCCA | 20 | 177 |
| 175 |
|
| |||
Z8774 | 17 | GATGCCAGCAGTGATGCTAA | 20 | GGCCAGCATTGCTACATTTT | 20 | 283 |
| 229 |
|
| |||
Z8845 | 17 | TAAATGCAACAAACGGACCA | 20 | GCCAAGTCATGCAACATCAC | 20 | 250 |
| ? |
|
| |||
Z8862 | 17 | TCGCTCCACACCATTAATGA | 20 | ACTTCTCCACCAAAATCCCC | 20 | 220 |
| 196 |
|
| |||
Z8884 | 17 | CCTCCTTTACCCTTTCCGAG | 20 | CTCACAGACACATGTGCACG | 20 | 142 |
| 172 |
|
| |||
Z8980 | 17 | GCCCCAGGGTAACATTTAAC | 20 | GTTGGGTGCTGGTTTTGACT | 20 | 194 |
| 164 |
|
| |||
Z9123 | 17 | CTGTCAAGTATCATCGGGAGTG | 22 | GCACTTTTCACCATATCAGGG | 21 | 154 |
| 146 |
|
| |||
Z9179 | 17 | AGCTCCTCTGAGTGCACAGA | 20 | AGATTAAAGGTCAACCGCAGA | 21 | 251 | 289 | 241 |
|
| |||
Z9287 | 17 | TGCTTGTGTGTGGTAAATCTCA | 22 | CATCACCGATACCTCCGC | 18 | 202 | 224 | 196 |
|
| |||
Z9337 | 17 | AATCAGCACACTACCCAGGG | 20 | TCCCAAAACTGGGACTAACG | 20 | 118 |
| 102 | 112 |
| |||
Z9426 | 17 | TCTTGCTGTGAGGTGACAGTG | 21 | GTCAAACTGGAAATCCAGACA | 21 | 217 |
| 201 |
|
| |||
Z9586 | 17 | GCATTGTACTGCTGAAGAGGC | 21 | GAGTTTCAGTCGACTGTGGAG | 21 | ? |
| ? |
|
| |||
Z9591 | 17 | AGAGGCGTCAAACTGTCCC | 19 | GCTTGAGAGTTTGACAGGGC | 20 | ? |
| ? |
|
| |||
Z9633 | 17 | AGGAATCTCACAGACACCGG | 20 | CGTGGGTGAGAGGTGAGGTA | 20 | 259 |
| 269 |
|
| |||
Z9692 | 17 | CCAGGCGAGTTCTCTCTTTG | 20 | AGAGCAGACGAGCTTTCCAG | 20 | 236 |
| 244 |
|
| |||
Z9818 | 17 | ATACACAGCAAACAGGGTGC | 20 | CAGCGTGCAACTAGACAGGA | 20 | 138 |
| 136 |
|
| |||
Z9830 | 17 | GCTGCACTGTTCCTGTTTCA | 20 | TGTGACTGGCTGGATGAGTAA | 21 | ? |
| ? |
|
| |||
Z9831 | 17 | GAATCCCTGTGCCAGTTGTT | 20 | TCAGGTGTCTTAGGAAAATTGTT | 23 | 175 |
| 187 |
|
| |||
Z9847 | 17 | GGGCCAGACCAATTAGAACA | 20 | GTGTTGGCTGCTCAGTTCAA | 20 | 173 |
| 225 |
|
| |||
Z9890 | 17 | TGCTGCTGTTTTCAAGGTCA | 20 | CTGGGGAGAGGAATCAATGA | 20 | 260 | 262 | 268 |
|
| |||
Z10247 | 17 | CTCCTCCAGCAAACTGCTTC | 20 | ACCACAGACACACCCGTACA | 20 | 163 | 171 | 157 |
|
| |||
Z10387 | 17 | ATTGCACAGACATCAGCCAG | 20 | ACGCAGGACGAGATCTTCAC | 20 | 284 |
| 290 |
|
| |||
Z10742 | 17 | AGTTGCAACTGGCTTACGCT | 20 | AATTTAGACAATGCCGCACC | 20 | 146 |
| 144 |
|
| |||
Z10824 | 17 | TCCATCAGTTCGCAGATGAG | 20 | CTGCACGAGCTCCTGTAGTG | 20 | 153 | 165 | 183 |
|
| |||
Z10941 | 17 | CACAATGCAACACCATCACA | 20 | GACTTCTGCTGCCGAGAAAC | 20 | 239 |
| 215 |
|
| |||
Z10985 | 17 | AAGGAGGAAGTCACCAAGGG | 20 | TCACACACTTCAAGGATCCG | 20 | 111 |
| 109 |
|
| |||
Z11202 | 17 | GCGGTGATAGGTTTTGCATT | 20 | CGTGTGAAATCCCCTCTGTT | 20 | 210 |
| 216 |
|
| |||
Z11340 | 17 | ATCCAGCAGAACACCAAACC | 20 | TGAAACACTCCTGTGGGACA | 20 | 239 |
| 253 |
|
| |||
Z11341 | 17 | TCTCCAGAAATGCTGCTCCT | 20 | GCTGGATCTCATGGGAGGTA | 20 | 259 |
| 277 |
|
| |||
Z11456 | 17 | AAATCTTCAGGTCCACACGC | 20 | TGCCACCCTTCTGTTGAAAT | 20 | 165 |
| 171 |
|
| |||
Z11774 | 17 | GTGTTGGCTGCTCAGTTCAA | 20 | AATAGATGCCCACCGACAAG | 20 | 136 |
| 188 |
|
| |||
Z11807 | 17 | TGACCAGATCTTCCCCAAAC | 20 | TCTGTGTTAGCAGATGATGAACG | 23 | ? |
| ? |
|
| |||
Z13336 | 17 | AGAAGAGGAGGCGGAGTCTT | 20 | TGCTAGTGTGAGCAGATGGG | 20 | 183 | 237 | 199 | ? |
| |||
Z13385 | 17 | AGCTCGGTTTACAAGTGCGT | 20 | TTTGTATTCCTACCCTGCGC | 20 | 119 |
| 117 |
|
| |||
Z13557 | 17 | AGCACTGCCTGATACCGTCT | 20 | TTGATGTGCTCTGCTTGGAC | 20 | 240 |
| 244 |
|
| |||
Z13631 | 17 | TCTGCTCCCTGTTGACTGTG | 20 | CCATCATCCTAGCCATTGCT | 20 | 294 |
| 220 |
|
| |||
Z13643 | 17 | CCATTTGTGCTGAAGTGTGG | 20 | AGGACAATGGCTGAGGTCAC | 20 | 204 |
| 200 |
|
| |||
Z13823 | 17 | TCACTCCCACATACAGGCAA | 20 | AACGGCTTAGCAGGAAGTGA | 20 | ? |
| ? |
|
| |||
Z14082 | 17 | GTTTCATGAGCATGTGCTGC | 20 | TCAATCACACAGCTAAGCCG | 20 | ? |
| ? |
|
| |||
Z14083 | 17 | CCTCTTCCCACAAGTCCATT | 20 | TTCCCAATTAAAGCAAACGC | 20 | ? |
| ? |
|
| |||
Z20006 | 17 | GAAAGCATCAAACACTGCCA | 20 | GGTTAAATGTCAGGGGCAAA | 20 | 224 |
| 192 |
|
| |||
Z20132 | 17 | CATGAGAAGCTTTGGCAACA | 20 | GTCAATTTGGTGGAGCAGGT | 20 | ? |
| ? |
|
| |||
Z20803 | 17 | TTTCTTGACATACGGCCTCC | 20 | CAGCATGGCTTTTGAAATGA | 20 | 200 |
| 148 |
|
| |||
Z20842 | 17 | TACACACAATGGCAACTGCA | 20 | TGACAGACACTGAAATGGCC | 20 | 202 |
| 174 |
|
| |||
Z21122 | 17 | TTTTTACTAATGGCCGGTCG | 20 | ACCTGGGTGTCAGAAGCACT | 20 | 210 |
| 178 |
|
| |||
Z21144 | 17 | CCTGTGAATGTGGACACTGG | 20 | TGTCAGCATTGGTCCTTAGC | 20 | 170 |
| 194 |
|
| |||
Z21151 | 17 | TTGTCCACCTTTAACCCTCA | 20 | CCCAGGAACTGCATGTCTTC | 20 | NA | NA | NA | NA |
| |||
Z21194 | 17 | AGTTCACCTTGAGGCCCTTT | 20 | ATGCTTTTCTCTCTGCGCTC | 20 | 208 |
| 166 |
|
| |||
Z21265 | 17 | ACGTGCATTGTAACCCCTTC | 20 | CAGGTAAACCTTGGGCCTTT | 20 | 138 |
| 136 |
|
| |||
Z21435 | 17 | GGGCATGCAGAAAGAATGTT | 20 | TCTCCCTCTTTTGCTGGCTA | 20 | ? |
| ? |
|
| |||
Z21703 | 17 | CACAATCAGATTAAAATCCGCA | 22 | ATCGCTGGAATTACCACCAC | 20 | 123 |
| 109 |
|
| |||
Z22016 | 17 | GCCTCCAGGTCTGTTCTTATATTT | 24 | ATTGCCCTATGGACACAAGC | 20 | 258 |
| 276 |
|
| |||
Z22083 | 17 | GCACATTGTAGCTCGCTCTG | 20 | CTCAGACCACCACCTGTCCT | 20 | 193 |
| 195 |
|
| |||
Z22279 | 17 | AGCACCTCAGACCAGATGCT | 20 | CCATAACAGATGGGGTGAGG | 20 | 215 |
| 207 |
|
| |||
Z22667 | 17 | AGCTGTGGCTGGACAAAAAG | 20 | AGGAGTGAGTCTGGGGGTTT | 20 | NA | NA | NA | NA |
| |||
Z22674 | 17 | AAAGTCTTTAGGCCTTTTACAATGA | 25 | CGTTCCCAGATGCTTTCAAT | 20 | NA | NA | NA | NA |
| |||
Z22901 | 17 | AGAAACCCATTTCTGCATGG | 20 | GGTCCATTTGTTGAGCGATT | 20 | NA | NA | NA | NA |
| |||
bmp4 | 17 | CTGTGAGGAGCTTCCATCACGAA | 23 | GGAATCGGCAGAGGCTGTCTCC | 22 | NA | NA | NA | NA |
|
| ||
GOF12 | 17 | TCACTCACTGGGAATGTAGGG | 21 | ACAAGCAGAGACATAATCAACTGC | 24 | 157* | NA | NA |
|
| NA | "Goff, et al., |
|
gsc | 17 | AGACAGAAAAGGTCGTCGTCA | 21 | ACAGCCCATTCCAGAACATC | 20 | 401# | NA | NA | NA |
| "Postlethwait, |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
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