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Linkage Group 18 SSR Markers

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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

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Marker Number	Linkage Group	Forward Primer Sequence	Length	Reverse Primer Sequence	Length	AB_1 Size	AB_2 Size	In_1 Size	In_2 Size	Comments	dbSTS Accession
Z3763A	18	CCAATTAACGGAAGTGAACCGC	22	GCACTGGATCAGTCCCGCTT	20	266		260
Z737	18	AACACTTGATATTGCATGACGG	22	ATGTTGGTTAGCATGCACCA	20	108		98			G40551
Z928	18	CCAGAGTACTCGATCTGTCTTGA	23	ACACCTTCGGCAGTTTTCAC	20	94		106			G41428
Z1136	18	TCATGTGAAGCCTGCAGTTC	20	AGCTTCAGCTGTTTAAAGGTGC	22	105	119	111	115		G41324
Z1144	18	CTCCTCTCCGGGATACACAC	20	ACCACGAGTCTGAGTGCTGA	20	253		263			G41328
Z1201	18	GGAGCTGTGGAGCACAGAAA	20	CGTGTACTACCCCGGCAC	18	NA	NA	NA	NA		G41340
Z1261	18	AGCAGGGTGGAGAGTCTGAA	20	CGGTCTCAGAGGAGATCTGC	20	NA	NA	NA	NA		G41348
Z1417	18	GCGGAGACACAGCTCTGAACG	21	TCCAGGATGCAGGCGTTGTA	20	NA	NA	NA	NA		G41369
Z1654	18	CGTCCAGCACTGCCGACATC	20	CAGCCGACTGAAGGTGTAGAGC	22	NA	NA	NA	NA		G40131
Z1795	18	TGGGGTCCAGCCTTTGCTGA	20	GCTGCACGCCACCGCCTACT	20	NA	NA	NA	NA
Z3232	18	TCACCCTTTGGCCATGTTGT	20	AGGGGCCCTTAAGTGGACTCC	21	221	239	193		Use at your own risk
Z3558	18	GTTATTGGCACCAGCCAGGC	20	TGATAGTCCTGTCGCCGCAA	20	161	243	157			G41451
Z3838	18	CGTAAATGCAGAAAATTGGGCT	22	ATGCTTGAGCCCATGAATGG	20	NA	NA	NA	NA		G41468
Z3853	18	TCCCTCACAGCTACTCAGCAAG	22	GAGGCCAAGAAAGAAATCTCGA	22	NA	NA	NA	NA		G41469
Z3892	18	CGCGCCAAATCATCTTTCCT	20	TTCACACACGCTCACGTCCA	20	NA	NA	NA	NA
Z4263	18	AAGCTTCACGCCAAAGACTGTG	22	ACAAGCACACCATTGCTGCA	20	324		318	320		G41492
Z4378	18	AACTGTATGATCGCCTTAAC	20	ACTTCCTGTCTAGTGTCTGATTAT	24	NA	NA	NA	NA		G40361
Z4717	18	AAGGTGAAGTGTGTGGCCTTCA	22	CGTGAGGTTTGCTGTCACGG	20	NA	NA	NA	NA		G40372
Z5231	18	AAAGTTGGGTTCATGTTGTGCG	22	ACGGATCACATCAAACCTGTGC	22	144	146	148	150		G40384
Z5321	18	TCCTCCACTGAGGTCACTTCCA	22	TCATAAATTAAACCCCGCCCTC	22	NA	NA	NA	NA		G41572
Z5442	18	AACTGACTGTAGCGCATGGGG	21	CAGAGGTCGCCACAGTGGAA	20	NA	NA	NA	NA		G41580
Z5479	18	AGCCGTATGACAGCTTTCCAGG	22	CTGTCCACAATGAAGCAGCACC	22	NA	NA	NA	NA		G40391
Z6098	18	ACCTGATGGCTTTGTAACCG	20	CAGCACCTCATCAGGCCT	18	118		104			G40403
Z6572	18	AGGGCTCAGTGCTGTTCG	18	CTTGCCGACGCTCTTGAT	18	267		303	325		G41618
Z6709	18	GCTCAGCCGAGGTTAATCTG	20	CCGGATCAAACTTGAGGAAA	20	122	124	116	118		G41641
Z6710	18	CATGTAGGGAAAGGAAGCCA	20	CCTCTGCTCAGACTGCAGTG	20	122	?	100	114		G40462
Z7142	18	TGGGAGGAGAGGCACAAATA	20	TAGATGCGTGCAAGAGTTGC	20	281	233	345	n		G41771
Z7256	18	CTTCCGAGAGTCCACAAAGG	20	TGCTCTGAAATGGAAATTTTCA	22	367		411			G41143
Z7330	18	GAAACCCGTGAAGGTTTGAA	20	CTTGAACAGAGCAGAGTTCAGA	22	153	159	157	181		G40542
Z7417	18	TCCGTGATTTCCTCCTGATC	20	TCAGATTTAGAGCACGCGC	19	259		199
Z7426	18	CAATCAGCCTTACACGCTCA	20	TGCTGGAAGTGTGTGATCTTC	21	136	178	142	152
Z7618	18	AAGCATTTGTGGTTTAAATGCA	22	GCTGCCCATTCTTCAAACAT	20	141		127	129		G40577
Z7654	18	CCAATCACAGAGGCAAACAA	20	TCATGCTGAAAGGTGTTGGA	20	151		257	315		G40585
Z7865	18	TGTCTGTTAGGACTCTGGAGGA	22	CTCACACCATGCTGCACAAT	20	233	271	229	n		G40602
Z7961	18	TGCTCTTCTGTATTCTGCCG	20	CGGGGTATCTGCAGACTGAT	20	177		171	181		G40615
Z8343	18	TGCAAATCAGATTCTAGAACCA	22	ATCATTAGGACACGCAAGGG	20	194	216	200
Z8468	18	TCGTTATGAACCCCTAAAGCA	21	CACACAGGAGACCGGGTTAT	20	225		209	211		G40655
Z8475	18	CATCTGTTAGTGTGTGCGTGC	21	TTGATTTGGCTAGAGATCCTCTG	23						G40658
Z8488	18	TCACTCATGCGTTTACCCAA	20	CCCCCACGGTGTATTGATTA	20	130		118	120		G40659
Z8525	18	AAAGCAGAGCAAACCTGAGTG	21	CTGAAAATGGGAAACGAGGA	20	196		204	208		G40664
Z8788	18	GTTCTTGTCCCGGCTGAAC	19	TGCAACCCATCACTTGAAAA	20	206	210	216	220		G40690
Z8823	18	CTGCAGGGAGAGGCATTG	18	TCTAATCAGCGCCCTTCTTG	20	275		265				G40697
Z8840	18	TGGATCCTCATCACAGGACA	20	GTGTGCATGCTTGGAAAAGA	20	259	299	277	n		G40699
Z9024	18	CCACTGCAGGGTACTGGTG	19	AAAAGCCACACACTTTTGGG	20	221		237	239		G41819
Z9094	18	CAACCCTTGACCCTCGTG	18	TGACCAGAGTTTCTTGGCG	19	267		261			G40726
Z9154	18	CACGGGCTCTCTAATTGGAA	20	CCATTAGCAAGTCGTGACGA	20	157	179	161	163		G40738
Z9194	18	GAGTGCTGTCCACCCACC	18	AAATAAGCCGTGTGTCTGCC	20	117		113			G41631
Z9231	18	GAAATTACAGCTCCATAACGGC	22	TCTGCTTCATTCCCTGCTG	19	228		226	252		G40750
Z9404	18	CCACTGATGGACAGGGTAAC	20	GTGATCTTTGGCGTCTTCG	19	267		179			G40787
Z9484	18	GCCTCGGGTGAAAGACATAA	20	TACTTGTGGAGACATTTGGCC	21	123	125	157	161		G40799
Z9801	18	ATCAGTGTGTCCCGCTTCAT	20	CGCCGGAAACTCTTATCATC	20	?		?	?		G41659
Z9941	18	GCACACTCGCACATTAACCA	20	TTGCACAGAGCACATTCCTC	20	?		?			G40867
Z10008	18	AAGCCAAACTGATGGGTACG	20	GGCTCCTTTGATGTCCCATA	20	149	259	183			G39738
Z10264	18	GTTCAGACACCGACCGTTCT	20	ATGTTGCCATTTTCACACCA	20	176		174			G41691
Z10312	18	CGCGTGTGACTGATGGAGT	19	ATGTGTAGGGCGTTACCGAC	20	102		98	170		G39778
Z10691	18	GTGAGGGGTTCAAACCTCAA	20	TCAATGGCTCAGACCCCTAC	20	118	120	130			G41705
Z10729	18	AGCGTGTAGGAAGCTTTCGA	20	TGTGCTGACACTGCAACAAA	20	273	295	305	319		G39822
Z11257	18	AGAACAGGCTTGGCCAACTA	20	CTTTGTGTACACGTGGCCTG	20	108		102			G39883
Z11270	18	GGTCTGCAATCAGAGAGAAAAA	22	TTAGCCAGATGCTGAGCTGA	20	166		196	204		G39885
Z11608	18	ATCAGAAGAGTATTGTCAACGCA	23	CACAAACTGAACTGCAGACTCC	22	NA	NA	NA	NA
Z11685	18	TACGTCAACAGCTTCATCGC	20	ATGCACTCCTGTCCCTCTGT	20	198	282	236			G39945
Z11709	18	GCCTCCCTCATGCATACACT	20	CTTTCTTCCATCTCCCCCTC	20	123		115	121		G39951
Z11854	18	GCTGAAAGGCTGGAACATTC	20	TTCAGTTCCCCGTGAAGTTC	20	?		?			G41753
Z11944	18	GGGGGCAGTAAAGTCCTTGT	20	TGTCTCTTTCAGCGCTCAGA	20	261		235	259		G39975
Z13220	18	CGGCTTTAAAGATTCACTGACA	22	TTGAGCAATAATGTGAAGCTGC	22	128		124	126
Z13231	18	CCTGGAGCCAGGTACAGCTA	20	CTCTGCTGAGCGAGAGGTTT	20	251	299	255	275		G41820
Z13260	18	TCCTGACAGACTGCTTTTTGC	21	AACTTCTCCCCAGTTCACATG	21	NA	NA	NA	NA		G39079
Z13329	18	CCATATGACCTGGCTGGAAT	20	CCAATGACATGATCACATCGA	21	242		218	238		G40009
Z13380	18	AAACCGGAGACAGCAGGTTA	20	CTGTGTTCTGCTCTGCTGCT	20	209		203	205		G40015
Z13426	18	CCGTTCCTGGAGTCCTGATA	20	GGATCCCAGACTTCAGGTGA	20	122		112			G41763
Z13692	18	CCTAAATTGCGCATGCAC	18	TGTGGATTCAGACAGCCTTG	20	233	241	227			G40061
Z13768	18	CGAGCTGAAACATTCGACTG	20	ACCTGTAGCCCCAGTTGATG	20	269		331	399		G40070
Z13836	18	CCTGGAGCCAGGTACAGCTA	20	CTCTGCTGAGCGAGAGGTTT	20	?	?	?	?		G40079
Z14011	18	CACAGCTCACTCCAGCAGAA	20	GACGGCTCTCTAGCGCTCTA	20	?		?	?		G40097
Z14048	18	AAAACCAATTAGCAGCGAGG	20	GTTTGGGTCCCCAGTCTTTT	20	NA	NA	NA	NA		G39179
Z14136	18	ATGATGCAGATCCCCTGTTC	20	TCCTCTGAGAACTTCCTGCTG	21	103	107	93	129		G40111
Z14176	18	GCAAACGCATAAACAACCCT	20	TTTGATGGTAAATGGCGTGA	20	?		?	?		G40113
Z15417	18	CTGCAGTCTAGCCAGCAGC	19	GACGGCAGCTCATTCTTCTC	20	120		118			G41095
Z20015	18	ACACCACCTGTGCTTCATGA	20	ACCTGTTTGTTTCCTGGCAC	20	173		169			G41724
Z20602	18	ACAGACCAGAGAGCTGTTTTCC	22	TGTTTATGGAGATGTGGCCA	20	141	143	137			G40186
Z20605	18	TCCCCTATGAGCATGAATCA	20	ACTAAATTCAGTGACAACCCGG	22	136		154			G40187
Z20981	18	GGACGCTGGATTGACAGTTT	20	GATCATGATGATTGACACTTTCG	23	183	197	183			G40214
Z21330	18	TCCATCCAAAATCATATCTGTAACA	25	GGCATTAAGCTTGACGTGGT	20	309		273			G40242
Z21505	18	ACACCGCAACTCTTACCTGG	20	CCGTGCAGGAACTCATACCT	20	169	177	173	177		G39363
Z22032	18	GCATGTCTCTGCGTATGCAT	20	CCTCATGCTCTCCCACTAGC	20	137	141	141	143		G40283

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Table generated Wed Oct 7 16:28:07 1998

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Linkage Group 18 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

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