Linkage Group 24 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z241 | 24 | CAATTAAAGGTGCAGTGGAGC | 21 | TTGGCCTCTGCTGTTTCTCT | 20 | NA | NA | NA | NA |
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|
Z249 | 24 | TCTTCCCCTACAGGCACAGT | 20 | ATGATACGCAGTCAACGTATCG | 22 | 147 | 149 | 141 | 151 |
|
|
Z911 | 24 | GCTGCTTGTGGTGTGAAAAA | 20 | TAATTTCATTCCACCTGCTGG | 21 | NA | NA | NA | NA |
| |
Z1061 | 24 | CATCGCTGGTTACTGCTGG | 19 | TCTCTATTATAAGCCTCCTCACCG | 24 | 102 |
| 106 | 108 |
| |
Z1233 | 24 | ATTTCTAGTGCATTTCTCAGTTTGG | 25 | CCCATACTGACACTGATGCG | 20 | NA | NA | NA | NA |
| |
Z1243 | 24 | CGTCAAGAGAGGACGACTAACC | 22 | AAACAGATTTATACCAAGTTTACCTGG | 27 | 191 |
| 201 |
|
| |
Z1584 | 24 | ATAATGAACGTTTGGCGAGG | 20 | AAGGAAGTCTTTGTGAATTGACG | 23 | NA | NA | NA | NA |
|
|
Z3310 | 24 | GCCCCCTTTGTTGATTCATTC | 21 | CAGCCCACTGAAACTCGCAA | 20 | 104 |
| 144 | 150 |
|
|
Z3314 | 24 | ACACGCTCATTTCCCCCAAA | 20 | ACACCCGAACCCTCCCAAAG | 20 | NA | NA | NA | NA |
| |
Z3399 | 24 | CTCCTAGGGTGCTCCGCCTT | 20 | ACAGCAGATGCCCTTCCAGC | 20 | NA | NA | NA | NA |
| |
Z3901 | 24 | GTCCAATCCCTCAAATCCCTCC | 22 | TTGAACCTGCAGTGTGAAGCG | 21 | NA | NA | NA | NA |
| |
Z4437 | 24 | CGCCCACAACGCCATAGAAA | 20 | TGTCCCGGTAAAAGTGAAGGTG | 22 | NA | NA | NA | NA |
| |
Z5075 | 24 | TGTGTTGTCTGATATGCCCACA | 22 | TGCAAAAAGCCTCTAAGTGCCG | 22 | 216 | 234 | 198 | 222 |
| |
Z5413 | 24 | TTGATGATCCCACAATGCGG | 20 | GGGATGTTTGCCAGCTGCTT | 20 | NA | NA | NA | NA |
| |
Z5478 | 24 | GGTTTATTCGGCTGTGGTGACC | 22 | GATTGGTTCACAGACGCAGACG | 22 | NA | NA | NA | NA |
| |
Z5624 | 24 | GACAGCAGCTCCAGATCCAGTG | 22 | GCGCTGTCAGGACTGTGAGC | 20 | n |
| 172 |
|
| |
Z5657 | 24 | GCCATCATGGAGTCCAACCC | 20 | TCCTCGTAAACCACCAAAACCA | 22 | NA | NA | NA | NA |
| |
Z6020 | 24 | ACTGCAGATCTTTGAACTCGG | 21 | AAACAAAAATTGCTGAAGGGG | 21 | 190 |
| 186 | 202 |
| |
Z6188 | 24 | AACCCATTACTGGGAAACACC | 21 | GAAACATCTGAACGCTGCAA | 20 | 170 |
| 188 | 204 |
| |
Z6239 | 24 | CCCTCTGATTATGTTACCACCC | 22 | GAATCAACCAAAAGGAAAGAGC | 22 | 291 |
| 185 | 233 |
| |
Z6296 | 24 | ACCCTGCAGCTGTGATCTG | 19 | GCAACACCGTAGCAACACC | 19 | 298 |
| 258 |
|
| |
Z6438 | 24 | ACGGAACCCAGATCAACAAG | 20 | TCTGATGTTTGGCGTAGCAG | 20 | 146 | 152 | 142 | 144 |
| |
Z6451 | 24 | CTCAGGGACTAGATGAGGCG | 20 | TACTCGTTTGCTTGGGCAG | 19 | 232 |
| 212 | 210 |
| |
Z6923 | 24 | TACCCACTGAGCCACCGT | 18 | CTGCATTGGCCCTGAAAC | 18 | ? |
| ? | ? |
| |
Z7132 | 24 | TGTGTTTTCCCTCTGCTCTTC | 21 | GTTTTGCATTTTTGCCCTGT | 20 | NA | NA | NA | NA |
| |
Z7234 | 24 | TCCCAGAACAGAAGTCTGCA | 20 | TATCTCGGTGTTCCTCAGGC | 20 | 162 | 182 | 144 | 186 |
| |
Z7273 | 24 | GTCGTCTGTTCTGCAGTGGA | 20 | GCAGCCTCTTCAGGTCAGAG | 20 | 163 | 195 | 181 |
|
| |
Z7292 | 24 | GGAGTGTGTGGCATTAGCAG | 20 | TGAATGAATGAATGTTCATGTTTG | 24 | 113 |
| 103 | 121 |
| |
Z7324 | 24 | AGTTTGAAATGGTGCAAGGC | 20 | GACGGACACGTGTTTCCTCT | 20 | 142 | 146 | 132 | 148 |
| |
Z7349 | 24 | GGTTCGCTCTGCAGCAAC | 18 | CGCACACTGGAGGCTGAT | 18 | 166 | 184 | 156 | 180 |
| |
Z7627 | 24 | TCCTGTTTCTCACTCGGGTT | 20 | GCAGGAACACCAGAGTCACA | 20 | 238 | ? | 242 | 274 |
| |
Z7823 | 24 | AAGAGGCAAATGTTTGTCGA | 20 | CGGTTATCGGTATCGGCTAA | 20 | 170 |
| 168 | 182 |
| |
Z7895 | 24 | GCAGTCTGTGGTTCCTGTGA | 20 | TCAGAATGTTTGATCTGCGC | 20 | 256 | 264 | 320 | n |
| |
Z7967 | 24 | AAAGCAAACTGTGACAGCGA | 20 | TAGGTGTGTCCCAAACTGCA | 20 | 260 |
| 238 | 276 |
| |
Z8130 | 24 | TTCAAAGGTTCTGAATCCGG | 20 | TCAGAAGCATGGTTCATGGT | 20 | NA | NA | NA | NA |
| |
Z8209 | 24 | ATGCTGCGCCTTCCTGAG | 18 | AATCAGTGTTTCCCAAAGCG | 20 | 208 |
| 204 | 210 |
| |
Z8221 | 24 | GGACACAGAGGTGGGACATT | 20 | GGCGTTAGTTTGATCAGTTGC | 21 | 108 |
| 104 | 106 |
| |
Z8259 | 24 | AGCCTTCAGAATATGCCATAGC | 22 | CAAGAAAGAGGGGGATACACA | 21 | NA | NA | NA | NA |
| |
Z8314 | 24 | GGGTTTGGGACACCTCTTTT | 20 | GTTACCCTCCCGTATCAGCA | 20 | 180 |
| 184 | 190 |
| |
Z8327 | 24 | AAGTGCAGACGTCAGTGCTG | 20 | TCTGCACGACAGTTACACACTG | 22 | NA | NA | NA | NA |
| |
Z8382 | 24 | ATGATGACAGTACTGCCTGTGG | 22 | GATCTTACAGGTGGACCTCTGG | 22 | 190 | 206 | 222 | 242 |
| |
Z8456 | 24 | GGGCACCTGATGCTTCTTAC | 20 | TTGGATGAACTGATTGATGGA | 21 | 189 |
| 179 |
|
| |
Z8602 | 24 | CTGTTTTCTGCTCCACTTTCG | 21 | ATGATGAGCGGAGGAAAATG | 20 | 176 |
| 154 | 192 |
| |
Z8969 | 24 | GTTTGAACCCTCGTCCAAGA | 20 | GAGCTTAGCAGTGTCTCGGG | 20 | 237 |
| 269 | 281 |
| |
Z9127 | 24 | TGCTCCGATCACTTGCACT | 19 | GCGTTTCCTGTGATGGTTG | 19 | 267 |
| 251 |
|
| |
Z9321 | 24 | GCAATTGTGGCTCAAGTTGA | 20 | CACGCTGATCTGCTGAAGTC | 20 | 208 |
| 216 | 224 |
| |
Z9325 | 24 | TCCAGAACCAGAGCTTTAGTCC | 22 | GCAAGGTGAGAAGATGCACA | 20 | 217 |
| 219 | 229 |
| |
Z9380 | 24 | TTTGCATGTCTGTGAGAGGC | 20 | AGCGAGAGCATGTGCGTG | 18 | 260 |
| 248 | 252 |
| |
Z9387 | 24 | TCAGGAGCTCAAGGGCAC | 18 | GATCCTTCAGTGTCCCCTCA | 20 | 167 | 201 | 195 | 201 |
| |
Z9603 | 24 | AGCAGACCAGCATTTCTGTG | 20 | GCTGGTTTATGGTGGTTCGT | 20 | 294 | 340 | 290 | 360 |
| |
Z9673 | 24 | TCTTCTTTAAAGTGCTGCTCCA | 22 | ACCAGCGCTGTCTCAACC | 18 | 83 | 95 | 81 | 93 |
| |
Z9851 | 24 | ATCAGCAGCGGGTTACTCAT | 20 | GCAGAGCTTCCAGGTCAGAT | 20 | 287 | 381 | 279 | 361 |
| |
Z9852 | 24 | ACAGCTCTTCTCCAGCAGGA | 20 | GTGCCTTCCAATAAAGCCAA | 20 | 231 | 267 | 217 | 219 |
| |
Z10257 | 24 | GCAAACCCCTATGACAGAGC | 20 | GAGTGAGTTTGGGGGTGAAA | 20 | 229 |
| 189 | 203 |
| |
Z10372 | 24 | TGCCTCACCATTACACTCTCTC | 22 | AGGGTTCAGGTTAACCAGGG | 20 | 131 | 139 | 137 | 147 |
| |
Z10440 | 24 | GCGCTGTGTACATCAGCAGT | 20 | GAGCAGAATGAGCGGATCTC | 20 | 184 |
| 198 | 224 |
| |
Z10458 | 24 | GAGATGCATTCCAGCACTGA | 20 | AAGAGCAGCCCAGATGTCAT | 20 | 211 | 213 | 209 | 237 |
| |
Z10529 | 24 | GGGAAATGACACGTAAAATGC | 21 | TGGTTATTGTGCTCTCAGGTG | 21 | 175 |
| 207 | 211 |
| |
Z10961 | 24 | AACCCCATCCAGACCTCTCT | 20 | GTGACACGGGTCAGAAGGTT | 20 | 128 | 140 | 134 | 136 |
| |
Z11862 | 24 | TCAGACATAAGCATGAGCGG | 20 | GAGGTGTGTGTTCAGCTCGA | 20 | 174 |
| 182 | 188 |
| |
Z13229 | 24 | GAATAAAAGTGGCATGCTTGC | 21 | CAGCCCGTCTCAAACATACA | 20 |
|
|
|
|
| |
Z13695 | 24 | TGTCGTAGGACATGGGGATT | 20 | TCGCTGCTTCGTTCTCACTA | 20 | 133 |
| 123 | 131 |
| |
Z14086 | 24 | AACACATCAGCACCTCCCTC | 20 | AAATTTCTGCCCCACAACAG | 20 | ? |
| ? | ? |
| |
Z17203 | 24 | ACAGAAGACTCCTGTTTTTGGC | 22 | TTGGGTAGCTAAATTGTGTGTG | 22 | 260 | 274 | 248 | 258 |
|
|
Z20051 | 24 | GCCCACTGCATATGTGTGTC | 20 | AAAAATCAGCGAAAATTCTCATT | 23 | 171 | ? | 135 | 143 |
| |
Z20415 | 24 | TGACAAAAACAACTGAACCCTC | 22 | TCAAGCCATTCCATACTCCC | 20 | 175 |
| 137 | 167 |
| |
Z20775 | 24 | CGAGAGGCATGTCAGATCAG | 20 | AGCCGGTCTGTGCTTTTAAA | 20 | 133 |
| 117 | 165 |
| |
Z21011 | 24 | CGGAGGATGGGGTAAATTTT | 20 | CCCCACAGATCCAAGCTTTA | 20 | 202 |
| 190 | 206 |
| |
Z21906 | 24 | ACACCAGACATGAAGGCCTC | 20 | AGAGCCATAACCGGATGATG | 20 | 138 | 142 | 82 | 122 |
| |
Z21908 | 24 | ATTGATTAGGTCATTGCCCG | 20 | AGGAGTCATCGCTGGTGAGT | 20 | 149 |
| 145 |
|
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Z22252 | 24 | TCTGGTCCTGCCTCTCTCAT | 20 | GCGGGAGGCATTTATTACAA | 20 | 232 |
| 236 |
|
| |
Z22375 | 24 | ATGTGGAAGCGATTAGCACC | 20 | AAGCTGCCTTCACTTCCTCA | 20 | 296 | 300 | 216 | 270 |
| |
Z22927 | 24 | CGATCTGTTGACTTCCTGCA | 20 | AAGGCATCTTTGACAGGTGG | 20 | NA | NA | NA | NA |
| |
Z23011 | 24 | TTGGGGAAAAAGTCTGCTTG | 20 | TCCAACATGTAAAAACCTGACAA | 23 | NA | NA | NA | NA |
| |
Z23038 | 24 | TTCAGCTGGTGTTTGAGGTG | 20 | TTTTCAAAGCAAATGCAGGA | 20 | NA | NA | NA | NA |
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Legend
Table generated Wed Oct 7 16:28:07 1998
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