Linkage Group 06 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Z6523A | 6 | AGGACGTCACCAATGTTCTC | 20 | CTTGATAAAGGTGACCCGTACC | 22 | 357 |
| 341 | 379 |
|
| ||
Z265 | 6 | CCTTCCCTCAAAGAGCGAG | 19 | TGGAGTCGCTCATTAGCAAA | 20 | NA | NA | NA | NA |
|
| ||
Z740 | 6 | AAACTTTGCTGCTCTTCCTCC | 21 | CTCTGTCAGGTCCTGTGATCC | 21 | NA | NA | NA | NA |
| |||
Z793 | 6 | TGGTGAAATTTTGGACAGCA | 20 | CAAGGACCAAATGGAAGGAA | 20 | 207 | 209 | 199 |
|
| |||
Z880 | 6 | TGATCTGAGACGTCTGCCG | 19 | GCGCTCTGACAGTGCTTACA | 20 | 150 | 160 | 170 |
|
| |||
Z1050 | 6 | ACTCTGAGTCTGCAGTCCCG | 20 | AACTGCTGCAGTTAATTATTGC | 22 | 119 | 145 | 129 | 167 |
| |||
Z1138 | 6 | GAACGACGGCACTCTATCCG | 20 | TTGCAGCCTTAGTGTAAACGAA | 22 | NA | NA | NA | NA |
| |||
Z1265 | 6 | ATATGTGCTGCTCATGATGAGT | 22 | AACAGACGAAGGGTGAAGGA | 20 | 102 | 140 | 114 |
|
| |||
Z1461 | 6 | CAGTACAGTGTCTGGAACACTGC | 23 | TGTCACGTCAGGTTTATATGGG | 22 | NA | NA | NA | NA |
| |||
Z1680 | 6 | AACGCATTTCCTGCCTCGTC | 20 | CAGCTCTGGAGATCTGAGGGTT | 22 | NA | NA | NA | NA |
| |||
Z1701 | 6 | AAGGATCAGCTGTTCTAACCCA | 22 | AGGCAGGTGTGAAAGCACCC | 20 | NA | NA | NA | NA |
|
| ||
Z3011 | 6 | GCTGTGAGTGACTGCTGGGC | 20 | CCCTTACACCGAAAGTCAATGC | 22 | NA | NA | NA | NA |
|
| ||
Z3368 | 6 | ACCCGCCTCCTGATGAACTG | 20 | CAGCTGTGGAACAGCGCATT | 20 | NA | NA | NA | NA |
| |||
Z3581 | 6 | TTCTGCTGTGGCAACCCCTT | 20 | AGCTCATCCCTTTGGCAGATT | 21 | 212 |
| 208 |
|
| |||
Z4297 | 6 | AGACTCACCATGGCTTGCTCG | 21 | TGTGCAGAGGAACAGCCCTG | 20 | NA | NA | NA | NA |
| |||
Z4339 | 6 | TCTCTCCGTGAGTTTCCGCC | 20 | CATCTCCATTGTTTCTGCTGGG | 22 | NA | NA | NA | NA |
|
| ||
Z4761 | 6 | GGTGAATAGGGCTAAATTGTCA | 22 | GCCAAAAATACATTTTGGATTT | 22 | NA | NA | NA | NA |
| |||
Z4950 | 6 | AAACGGATTCACAGACGAGCG | 21 | TTCATGAATGAGGCCCACTTTG | 22 | 178 | 186 | 190 | 208 |
| |||
Z5294 | 6 | AGGGCGGCGAAATTGAAATT | 20 | AGCTCTAACCCCCTCCAAGCA | 21 | 343 | 363 | 351 | 369 |
| |||
Z6182 | 6 | CATCAGCCAAACTTTAGACGG | 21 | ACAGCAGAGACGCCACATC | 19 | 157 | 187 | 207 |
|
| |||
Z6330 | 6 | ATCACACGCCTGCAGAGTC | 19 | CAGCATTCAGCATGTGGC | 18 | 97 | 107 | 93 |
|
| |||
Z6446 | 6 | GCTTCACTTCACTCGCACC | 19 | CATCACTGCTGAGACCGGTA | 20 | 171 | 185 | 175 |
|
| |||
Z6601 | 6 | TGGGGAGAGAAATCCCTCTT | 20 | AAGTTTCAGGACATCAAATGGG | 22 | 152 |
| 144 | 146 |
| |||
Z6624 | 6 | TTCCCAGAAAACAGCCTCAG | 20 | CTGATCAACATCAAACGCAC | 20 | NA | NA | NA | NA |
| |||
Z6645 | 6 | AATTGTCCAGTGAGACCGCA | 20 | AAGGGAGCCACAATTACGG | 19 | 238 | 240 | 250 |
|
|
| ||
Z6767 | 6 | AGGCCGGTAGCAATAATCAA | 20 | GAATGCCCTTCCGTATTGG | 19 | NA | NA | NA | NA |
| |||
Z6837 | 6 | TGAGCACATACCACAGCCTG | 20 | GGCTGGGTGTGTCTTCCTAA | 20 | 146 | 164 | 144 |
|
| |||
Z6907 | 6 | TTTCCCAGAAGAGTGTGATGC | 21 | AAGGCCGACAGACAGAGAAA | 20 | ? |
| ? | ? |
| |||
Z7024 | 6 | ATGGAGATGCTTCAACAGGG | 20 | CACACACATAAGGTGTTTGCA | 21 | 198 | 240 | 164 | 172 |
| |||
Z7248 | 6 | GGTGACATGCCACTGATGTC | 20 | GGAATTTGTAACGTGTGGTGG | 21 | 227 | 357 | 233 | 247 |
| |||
Z7303 | 6 | GAACAGCGAGAGTTTGCTCC | 20 | TACAAGGACCCGTTTGCTCT | 20 | 249 | 299 | 305 |
|
| |||
Z7622 | 6 | AGCACAAACACATCCAGCAC | 20 | CTGGTCTGAGCATTTGGTGA | 20 | 209 | 211 | 203 |
|
| |||
Z7624 | 6 | GGTAGCGTGAAACTATCCTCC | 21 | GAGGACTGGCTTTATGAGCG | 20 | 223 |
| 195 | 199 |
| |||
Z7647 | 6 | GACAACATCCCAAACCGAAC | 20 | TCCTTCAGCGGTCTGTTTCT | 20 | 251 |
| 291 | 241 |
| |||
Z7666 | 6 | ACAACGCAGCATCATCTCTG | 20 | CAGTCATCCTGGACTGCTGA | 20 | 193 |
| 169 |
|
| |||
Z8229 | 6 | GGTTGTGGGCAGTAGGTGAT | 20 | ACTAACGGCCATTGCAAAAC | 20 | 111 | 113 | 121 |
|
| |||
Z8245 | 6 | TGCAAACTGCAGCAGTGAG | 19 | CTGGAACTAATGTGCTCCTCG | 21 | 134 |
| 136 |
|
| |||
Z8342 | 6 | TGGAGAGAAACGCCCCTT | 18 | TAACTTGCTGGCAACAGTGC | 20 | 167 | 183 | 201 | 215 |
|
| ||
Z8367 | 6 | TCCTGAGAGAGTCTGGAGTTCC | 22 | GCTCGTGGCCTTCTCTACAC | 20 | 130 | 138 | 124 |
|
|
| ||
Z8447 | 6 | GTGGATTCACAACAAACCCC | 20 | TCATTCACATCAGCACTGCA | 20 | 133 | 173 | 149 |
|
| |||
Z8532 | 6 | CGGCAGTTTATATGCAGCCT | 20 | CCTGAGACACAAGACAGCCA | 20 | 104 |
| 108 | 110 |
| |||
Z8709 | 6 | GGTTCTCTGTGAGGAGGCTG | 20 | GTTGTGCTGTTTGACGTGCT | 20 | 230 |
| 228 | 232 |
| |||
Z9142 | 6 | TACAATGTGTCCTGCATTCTCA | 22 | TTTCCTGACTGACACACTCCC | 21 | 132 |
| 96 | 98 |
| |||
Z9230 | 6 | AGCTTTCAAGAAGAATGGATGC | 22 | GTCCTCTTCATCATGCTAGCG | 21 | 220 |
| 208 |
|
| |||
Z9254 | 6 | TGATGTCAGCGCACCTTTAA | 20 | CTCTTTATGACGGCTGAATGC | 21 | 301 |
| 341 |
|
| |||
Z9417 | 6 | TCCCCCTCAGATGTGATTTC | 20 | CCCTACCTTGACCACCTCTG | 20 | 339 |
| 299 |
|
| |||
Z9652 | 6 | TTGTGTCAAGCTGGTGAAGTG | 21 | TGTTTGCAGCACTATCAGCC | 20 | 244 | 256 | 226 |
|
| |||
Z9679 | 6 | TGTGTTTTACAGACGGAGCG | 20 | ACGAGGGCGAGTGAATAATG | 20 | 279 | 329 | 329 |
|
| |||
Z9738 | 6 | CAGATCCGGAGCTTCAACTC | 20 | CAGCCAGCAGTGTAAGCTGA | 20 | 188 |
| 182 | 184 |
| |||
Z9870 | 6 | CTCCATAGCAACAGGGCATT | 20 | AGCTCTCACTTCTCAGCTCATT | 22 | 144 |
| 154 | 180 |
| |||
Z10141 | 6 | TCATGACTTTGCTGGTTTGC | 20 | TCTCTCCCACCTCCCCTAAT | 20 | 158 |
| 124 | 150 |
| |||
Z10183 | 6 | CCGACATGGACAGACAATTG | 20 | TGTGTCCTGTTGGGGATACA | 20 | 209 | 223 | 215 | 229 |
| |||
Z10339 | 6 | GCTCGAAAGTGCTCATCTCC | 20 | GAGGTCTGCCATCTCACACA | 20 | 186 |
| 216 |
|
| |||
Z10396 | 6 | GCAGAGGAGGCGTCTCATTA | 20 | GTCACGAGGGTCTCGATGAT | 20 | ? | ? | ? |
|
| |||
Z10479 | 6 | CTGTGGCTGTAATTGCTGGA | 20 | TCTAATCCGCTGTCAAACCC | 20 | 100 |
| 96 |
|
| |||
Z10581 | 6 | TCCACATCAGATGAGGAGTAACA | 23 | ATGATCTCCTCGTCCTCGTG | 20 | 182 | 184 | 188 |
|
| |||
Z10615 | 6 | TGCACAGAAAAATATAACATGAACA | 25 | TGCTGTATTTCCATCAGTCTGAC | 23 | 92 | 94 | 98 |
|
| |||
Z10657 | 6 | CCAGAACAGTGATGAAGCGA | 20 | GTCCCTGAGCTTCAGCAGTC | 20 | 234 | 254 | 262 |
|
| |||
Z10914 | 6 | GCTGTTTACTTCGGCAGCTT | 20 | AGAGACGGCGTCTGTGTTCT | 20 | 267 |
| 241 | 243 |
| |||
Z11276 | 6 | CAGCTCATTGTTCATCCGAA | 20 | ATTGCAAATGTGCCATCTGA | 20 | 207 | 269 | 213 |
|
| |||
Z11310 | 6 | CTGCACAACACGGACGATAC | 20 | ATAATGGCCTGTTTGCTTGC | 20 | ? |
| ? | ? |
| |||
Z11466 | 6 | TCTTCCGGCTGAGTTTGAGT | 20 | GCATGGGGTGAATTAAATGG | 20 | 176 |
| 173 | 183 |
| |||
Z11478 | 6 | CCCAGATCACCATTCATGTG | 20 | GCCTTTGGAAAATCCAGACA | 20 | 116 | 184 | 132 |
|
| |||
Z11919 | 6 | CAAATATGAACCCACCCCAC | 20 | GCTTCACACACCTGGAACAA | 20 | 209 |
| 223 | 257 |
| |||
Z11988 | 6 | AATGTGTGAGGATGCCTTCC | 20 | GCAGATCAAAGCATGAAGCA | 20 | 149 |
| 217 |
|
| |||
Z13275 | 6 | CATGCTGTCCCAACACAAAC | 20 | CACCTGTGGATGTTCAGGTG | 20 | 140 | 142 | 134 |
|
| |||
Z13328 | 6 | AAGGCAAGACCTCATTGTGC | 20 | GCAGGTACGTCTCCTTCAGG | 20 | 238 | 242 | 312 |
|
| |||
Z13538 | 6 | TGCTGGAAATGGATGAATGA | 20 | GTACCTTCTGCAGAGCTCCG | 20 | 196 | 198 | 200 | 206 |
| |||
Z13556 | 6 | CCTGAAATCATCAGCGACCT | 20 | CGCATAGAGGACCTACGAGC | 20 | 210 |
| 200 | 224 |
| |||
Z13614 | 6 | ACCTCGACATGGAGACAACC | 20 | ACAGACGAGGCACACATCAG | 20 | 289 | 317 | 245 | 269 |
| |||
Z13952 | 6 | CTAAACACTCCCTGAGCGCT | 20 | ACCTTCATCTCTGCTCCCAA | 20 | ? | ? | ? |
|
| |||
Z14038 | 6 | CTACTGCATACCCGACTGCA | 20 | GAATGTGATTGGGATTTCCC | 20 | 108 | 130 | 220 |
|
| |||
Z14050 | 6 | AGGACCAGCTGTCCTTCTCA | 20 | TCAGCCGGAGGAGTTACATC | 20 | ? |
| ? | ? |
| |||
Z14074 | 6 | GTTTTGCCTCTCGCTGACTC | 20 | ATATGCTGCCCCTGTTTGTC | 20 | ? |
| ? |
|
| |||
Z14110 | 6 | TTCATAGAGTGCTGGCATCG | 20 | CAACTCTGCTTTCTGCCACA | 20 | ? | ? | ? |
|
| |||
Z14158 | 6 | GCTTTCTCAGGCTGTATCGG | 20 | CACAATCCCACCAGACCTCT | 20 | 168 |
| 192 |
|
| |||
Z15448 | 6 | ATGTTAGAAAACAGGCGCGT | 20 | GCCATGCATAACTTTAGCACA | 21 | 144 |
| 184 |
|
| |||
Z15493 | 6 | TGCTCTGGTGTGATGTTTTACC | 22 | CCAACACACTTTCGTCCAGA | 20 | 184 | 186 | 180 |
|
| |||
Z17212 | 6 | TTTGAAAAGTCTGTCCATCACG | 22 | GGACAAGCAACAGGTCAGGT | 20 | 118 |
| 140 | 154 |
|
| ||
Z17248 | 6 | CAGAACCTCAGGCTTTACCG | 20 | TGGATAGAGTCCATAAGCTGGA | 22 | 125 |
| 113 | 257 |
|
| ||
Z20207 | 6 | CGCACATACATGCATCCAAT | 20 | GAAACAGCCTTGGAGGAGTG | 20 | 280 |
| 178 |
|
| |||
Z20381 | 6 | TGAAGAATGCACAAAGCCTG | 20 | TCCAACATCGACATACCAGC | 20 | NA | NA | NA | NA |
| |||
Z20411 | 6 | CAATGCCCTAGCAACCATTT | 20 | CCCCTGATTCTGGAGTGGTA | 20 | 138 |
| 98 | 118 |
| |||
Z20932 | 6 | TGTGGAAATGAGGAAAAGGC | 20 | CTGGTGTCAGACAGAGCCTG | 20 | 240 |
| 272 | 262 |
| |||
Z21489 | 6 | TGCAGATGTGAAAGGAGACG | 20 | TGCCTACTGGTTAACAGTCTGCT | 23 | 160 | 172 | 156 |
|
| |||
Z21901 | 6 | TGGAGTCTGAGACGGCTCTT | 20 | GGGAAAGACAGTGAAGCTGG | 20 | 158 | 160 | 164 |
|
| |||
Z22253 | 6 | GCCACCACTCGGTCAAAC | 18 | AGCTGTTTTTCCAGGGGTTT | 20 | 290 | 294 | 276 |
|
| |||
Z22345 | 6 | CCTCTGACTGACCACTGCTG | 20 | GCAGCTCACTGTTTCCATGA | 20 | 235 | 247 | 237 | 241 |
| |||
Z22444 | 6 | CGAGCAATAACTGCACTGGA | 20 | CTCTGGTGTGTCCATCCATG | 20 | 150 | 158 | 148 |
|
| |||
Z22467 | 6 | ATTGATGGACCGTTTGGTTG | 20 | TTCAATTGTGCTCACTGCAG | 20 | 151 |
| 87 | 105 |
| |||
Z22712 | 6 | TCAAACGCATCAGACTGGTC | 20 | ACAGACGATCAGATCAGGGG | 20 | NA | NA | NA | NA |
| |||
Z22745 | 6 | TGCTCAAACCAGCAACAGAC | 20 | CCCTCTGTTGACTAGTCCCC | 20 | NA | NA | NA | NA |
| |||
GOF2 | 6 | GACAGCTCCATTAACTAAACCTTT | 24 | GTCAGCAAGCTTTCTGTCACA | 21 | 187* | NA | NA |
|
| NA | "Goff, et al., |
|
GOF20 | 6 | TGCTGACCGCTGAAACTG | 18 | TGAACGGCCACATAAATAAGC | 21 | 133* | NA | NA |
|
| NA | "Goff, et al., |
|
GOF26 | 6 | CTGTGTGAGATTGTGTGTTTGTC | 23 | ACAACACGTTGCATTTGTCG | 20 | 241* | NA | NA |
|
| NA | "Goff, et al., |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
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