Linkage Group 18 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z3763A | 18 | CCAATTAACGGAAGTGAACCGC | 22 | GCACTGGATCAGTCCCGCTT | 20 | 266 |
| 260 |
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Z737 | 18 | AACACTTGATATTGCATGACGG | 22 | ATGTTGGTTAGCATGCACCA | 20 | 108 |
| 98 |
|
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Z928 | 18 | CCAGAGTACTCGATCTGTCTTGA | 23 | ACACCTTCGGCAGTTTTCAC | 20 | 94 |
| 106 |
|
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Z1136 | 18 | TCATGTGAAGCCTGCAGTTC | 20 | AGCTTCAGCTGTTTAAAGGTGC | 22 | 105 | 119 | 111 | 115 |
| |
Z1144 | 18 | CTCCTCTCCGGGATACACAC | 20 | ACCACGAGTCTGAGTGCTGA | 20 | 253 |
| 263 |
|
| |
Z1201 | 18 | GGAGCTGTGGAGCACAGAAA | 20 | CGTGTACTACCCCGGCAC | 18 | NA | NA | NA | NA |
| |
Z1261 | 18 | AGCAGGGTGGAGAGTCTGAA | 20 | CGGTCTCAGAGGAGATCTGC | 20 | NA | NA | NA | NA |
| |
Z1417 | 18 | GCGGAGACACAGCTCTGAACG | 21 | TCCAGGATGCAGGCGTTGTA | 20 | NA | NA | NA | NA |
| |
Z1654 | 18 | CGTCCAGCACTGCCGACATC | 20 | CAGCCGACTGAAGGTGTAGAGC | 22 | NA | NA | NA | NA |
| |
Z1795 | 18 | TGGGGTCCAGCCTTTGCTGA | 20 | GCTGCACGCCACCGCCTACT | 20 | NA | NA | NA | NA |
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Z3232 | 18 | TCACCCTTTGGCCATGTTGT | 20 | AGGGGCCCTTAAGTGGACTCC | 21 | 221 | 239 | 193 |
| Use at your |
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Z3558 | 18 | GTTATTGGCACCAGCCAGGC | 20 | TGATAGTCCTGTCGCCGCAA | 20 | 161 | 243 | 157 |
|
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Z3838 | 18 | CGTAAATGCAGAAAATTGGGCT | 22 | ATGCTTGAGCCCATGAATGG | 20 | NA | NA | NA | NA |
| |
Z3853 | 18 | TCCCTCACAGCTACTCAGCAAG | 22 | GAGGCCAAGAAAGAAATCTCGA | 22 | NA | NA | NA | NA |
| |
Z3892 | 18 | CGCGCCAAATCATCTTTCCT | 20 | TTCACACACGCTCACGTCCA | 20 | NA | NA | NA | NA |
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Z4263 | 18 | AAGCTTCACGCCAAAGACTGTG | 22 | ACAAGCACACCATTGCTGCA | 20 | 324 |
| 318 | 320 |
| |
Z4378 | 18 | AACTGTATGATCGCCTTAAC | 20 | ACTTCCTGTCTAGTGTCTGATTAT | 24 | NA | NA | NA | NA |
| |
Z4717 | 18 | AAGGTGAAGTGTGTGGCCTTCA | 22 | CGTGAGGTTTGCTGTCACGG | 20 | NA | NA | NA | NA |
| |
Z5231 | 18 | AAAGTTGGGTTCATGTTGTGCG | 22 | ACGGATCACATCAAACCTGTGC | 22 | 144 | 146 | 148 | 150 |
| |
Z5321 | 18 | TCCTCCACTGAGGTCACTTCCA | 22 | TCATAAATTAAACCCCGCCCTC | 22 | NA | NA | NA | NA |
| |
Z5442 | 18 | AACTGACTGTAGCGCATGGGG | 21 | CAGAGGTCGCCACAGTGGAA | 20 | NA | NA | NA | NA |
| |
Z5479 | 18 | AGCCGTATGACAGCTTTCCAGG | 22 | CTGTCCACAATGAAGCAGCACC | 22 | NA | NA | NA | NA |
| |
Z6098 | 18 | ACCTGATGGCTTTGTAACCG | 20 | CAGCACCTCATCAGGCCT | 18 | 118 |
| 104 |
|
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Z6572 | 18 | AGGGCTCAGTGCTGTTCG | 18 | CTTGCCGACGCTCTTGAT | 18 | 267 |
| 303 | 325 |
| |
Z6709 | 18 | GCTCAGCCGAGGTTAATCTG | 20 | CCGGATCAAACTTGAGGAAA | 20 | 122 | 124 | 116 | 118 |
| |
Z6710 | 18 | CATGTAGGGAAAGGAAGCCA | 20 | CCTCTGCTCAGACTGCAGTG | 20 | 122 | ? | 100 | 114 |
| |
Z7142 | 18 | TGGGAGGAGAGGCACAAATA | 20 | TAGATGCGTGCAAGAGTTGC | 20 | 281 | 233 | 345 | n |
| |
Z7256 | 18 | CTTCCGAGAGTCCACAAAGG | 20 | TGCTCTGAAATGGAAATTTTCA | 22 | 367 |
| 411 |
|
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Z7330 | 18 | GAAACCCGTGAAGGTTTGAA | 20 | CTTGAACAGAGCAGAGTTCAGA | 22 | 153 | 159 | 157 | 181 |
| |
Z7417 | 18 | TCCGTGATTTCCTCCTGATC | 20 | TCAGATTTAGAGCACGCGC | 19 | 259 |
| 199 |
|
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Z7426 | 18 | CAATCAGCCTTACACGCTCA | 20 | TGCTGGAAGTGTGTGATCTTC | 21 | 136 | 178 | 142 | 152 |
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Z7618 | 18 | AAGCATTTGTGGTTTAAATGCA | 22 | GCTGCCCATTCTTCAAACAT | 20 | 141 |
| 127 | 129 |
| |
Z7654 | 18 | CCAATCACAGAGGCAAACAA | 20 | TCATGCTGAAAGGTGTTGGA | 20 | 151 |
| 257 | 315 |
| |
Z7865 | 18 | TGTCTGTTAGGACTCTGGAGGA | 22 | CTCACACCATGCTGCACAAT | 20 | 233 | 271 | 229 | n |
| |
Z7961 | 18 | TGCTCTTCTGTATTCTGCCG | 20 | CGGGGTATCTGCAGACTGAT | 20 | 177 |
| 171 | 181 |
| |
Z8343 | 18 | TGCAAATCAGATTCTAGAACCA | 22 | ATCATTAGGACACGCAAGGG | 20 | 194 | 216 | 200 |
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Z8468 | 18 | TCGTTATGAACCCCTAAAGCA | 21 | CACACAGGAGACCGGGTTAT | 20 | 225 |
| 209 | 211 |
| |
Z8475 | 18 | CATCTGTTAGTGTGTGCGTGC | 21 | TTGATTTGGCTAGAGATCCTCTG | 23 |
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Z8488 | 18 | TCACTCATGCGTTTACCCAA | 20 | CCCCCACGGTGTATTGATTA | 20 | 130 |
| 118 | 120 |
| |
Z8525 | 18 | AAAGCAGAGCAAACCTGAGTG | 21 | CTGAAAATGGGAAACGAGGA | 20 | 196 |
| 204 | 208 |
| |
Z8788 | 18 | GTTCTTGTCCCGGCTGAAC | 19 | TGCAACCCATCACTTGAAAA | 20 | 206 | 210 | 216 | 220 |
| |
Z8823 | 18 | CTGCAGGGAGAGGCATTG | 18 | TCTAATCAGCGCCCTTCTTG | 20 | 275 |
| 265 |
|
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Z8840 | 18 | TGGATCCTCATCACAGGACA | 20 | GTGTGCATGCTTGGAAAAGA | 20 | 259 | 299 | 277 | n |
| |
Z9024 | 18 | CCACTGCAGGGTACTGGTG | 19 | AAAAGCCACACACTTTTGGG | 20 | 221 |
| 237 | 239 |
| |
Z9094 | 18 | CAACCCTTGACCCTCGTG | 18 | TGACCAGAGTTTCTTGGCG | 19 | 267 |
| 261 |
|
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Z9154 | 18 | CACGGGCTCTCTAATTGGAA | 20 | CCATTAGCAAGTCGTGACGA | 20 | 157 | 179 | 161 | 163 |
| |
Z9194 | 18 | GAGTGCTGTCCACCCACC | 18 | AAATAAGCCGTGTGTCTGCC | 20 | 117 |
| 113 |
|
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Z9231 | 18 | GAAATTACAGCTCCATAACGGC | 22 | TCTGCTTCATTCCCTGCTG | 19 | 228 |
| 226 | 252 |
| |
Z9404 | 18 | CCACTGATGGACAGGGTAAC | 20 | GTGATCTTTGGCGTCTTCG | 19 | 267 |
| 179 |
|
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Z9484 | 18 | GCCTCGGGTGAAAGACATAA | 20 | TACTTGTGGAGACATTTGGCC | 21 | 123 | 125 | 157 | 161 |
| |
Z9801 | 18 | ATCAGTGTGTCCCGCTTCAT | 20 | CGCCGGAAACTCTTATCATC | 20 | ? |
| ? | ? |
| |
Z9941 | 18 | GCACACTCGCACATTAACCA | 20 | TTGCACAGAGCACATTCCTC | 20 | ? |
| ? |
|
| |
Z10008 | 18 | AAGCCAAACTGATGGGTACG | 20 | GGCTCCTTTGATGTCCCATA | 20 | 149 | 259 | 183 |
|
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Z10264 | 18 | GTTCAGACACCGACCGTTCT | 20 | ATGTTGCCATTTTCACACCA | 20 | 176 |
| 174 |
|
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Z10312 | 18 | CGCGTGTGACTGATGGAGT | 19 | ATGTGTAGGGCGTTACCGAC | 20 | 102 |
| 98 | 170 |
| |
Z10691 | 18 | GTGAGGGGTTCAAACCTCAA | 20 | TCAATGGCTCAGACCCCTAC | 20 | 118 | 120 | 130 |
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Z10729 | 18 | AGCGTGTAGGAAGCTTTCGA | 20 | TGTGCTGACACTGCAACAAA | 20 | 273 | 295 | 305 | 319 |
| |
Z11257 | 18 | AGAACAGGCTTGGCCAACTA | 20 | CTTTGTGTACACGTGGCCTG | 20 | 108 |
| 102 |
|
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Z11270 | 18 | GGTCTGCAATCAGAGAGAAAAA | 22 | TTAGCCAGATGCTGAGCTGA | 20 | 166 |
| 196 | 204 |
| |
Z11608 | 18 | ATCAGAAGAGTATTGTCAACGCA | 23 | CACAAACTGAACTGCAGACTCC | 22 | NA | NA | NA | NA |
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Z11685 | 18 | TACGTCAACAGCTTCATCGC | 20 | ATGCACTCCTGTCCCTCTGT | 20 | 198 | 282 | 236 |
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Z11709 | 18 | GCCTCCCTCATGCATACACT | 20 | CTTTCTTCCATCTCCCCCTC | 20 | 123 |
| 115 | 121 |
| |
Z11854 | 18 | GCTGAAAGGCTGGAACATTC | 20 | TTCAGTTCCCCGTGAAGTTC | 20 | ? |
| ? |
|
| |
Z11944 | 18 | GGGGGCAGTAAAGTCCTTGT | 20 | TGTCTCTTTCAGCGCTCAGA | 20 | 261 |
| 235 | 259 |
| |
Z13220 | 18 | CGGCTTTAAAGATTCACTGACA | 22 | TTGAGCAATAATGTGAAGCTGC | 22 | 128 |
| 124 | 126 |
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Z13231 | 18 | CCTGGAGCCAGGTACAGCTA | 20 | CTCTGCTGAGCGAGAGGTTT | 20 | 251 | 299 | 255 | 275 |
| |
Z13260 | 18 | TCCTGACAGACTGCTTTTTGC | 21 | AACTTCTCCCCAGTTCACATG | 21 | NA | NA | NA | NA |
| |
Z13329 | 18 | CCATATGACCTGGCTGGAAT | 20 | CCAATGACATGATCACATCGA | 21 | 242 |
| 218 | 238 |
| |
Z13380 | 18 | AAACCGGAGACAGCAGGTTA | 20 | CTGTGTTCTGCTCTGCTGCT | 20 | 209 |
| 203 | 205 |
| |
Z13426 | 18 | CCGTTCCTGGAGTCCTGATA | 20 | GGATCCCAGACTTCAGGTGA | 20 | 122 |
| 112 |
|
| |
Z13692 | 18 | CCTAAATTGCGCATGCAC | 18 | TGTGGATTCAGACAGCCTTG | 20 | 233 | 241 | 227 |
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Z13768 | 18 | CGAGCTGAAACATTCGACTG | 20 | ACCTGTAGCCCCAGTTGATG | 20 | 269 |
| 331 | 399 |
| |
Z13836 | 18 | CCTGGAGCCAGGTACAGCTA | 20 | CTCTGCTGAGCGAGAGGTTT | 20 | ? | ? | ? | ? |
| |
Z14011 | 18 | CACAGCTCACTCCAGCAGAA | 20 | GACGGCTCTCTAGCGCTCTA | 20 | ? |
| ? | ? |
| |
Z14048 | 18 | AAAACCAATTAGCAGCGAGG | 20 | GTTTGGGTCCCCAGTCTTTT | 20 | NA | NA | NA | NA |
| |
Z14136 | 18 | ATGATGCAGATCCCCTGTTC | 20 | TCCTCTGAGAACTTCCTGCTG | 21 | 103 | 107 | 93 | 129 |
| |
Z14176 | 18 | GCAAACGCATAAACAACCCT | 20 | TTTGATGGTAAATGGCGTGA | 20 | ? |
| ? | ? |
| |
Z15417 | 18 | CTGCAGTCTAGCCAGCAGC | 19 | GACGGCAGCTCATTCTTCTC | 20 | 120 |
| 118 |
|
| |
Z20015 | 18 | ACACCACCTGTGCTTCATGA | 20 | ACCTGTTTGTTTCCTGGCAC | 20 | 173 |
| 169 |
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Z20602 | 18 | ACAGACCAGAGAGCTGTTTTCC | 22 | TGTTTATGGAGATGTGGCCA | 20 | 141 | 143 | 137 |
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Z20605 | 18 | TCCCCTATGAGCATGAATCA | 20 | ACTAAATTCAGTGACAACCCGG | 22 | 136 |
| 154 |
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Z20981 | 18 | GGACGCTGGATTGACAGTTT | 20 | GATCATGATGATTGACACTTTCG | 23 | 183 | 197 | 183 |
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Z21330 | 18 | TCCATCCAAAATCATATCTGTAACA | 25 | GGCATTAAGCTTGACGTGGT | 20 | 309 |
| 273 |
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Z21505 | 18 | ACACCGCAACTCTTACCTGG | 20 | CCGTGCAGGAACTCATACCT | 20 | 169 | 177 | 173 | 177 |
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Z22032 | 18 | GCATGTCTCTGCGTATGCAT | 20 | CCTCATGCTCTCCCACTAGC | 20 | 137 | 141 | 141 | 143 |
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Legend
Table generated Wed Oct 7 16:28:07 1998
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