Linkage Group 01 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker Number | Linkage Group | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 Size | AB_2 Size | In_1 Size | In_2 Size | Comments | dbSTS Accession |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z164 | 1 | TTGCTGTGTGTGTTTCTCAGTG | 22 | TGTTCCATCGCTGAGAAGTG | 20 | NA | NA | NA | NA |
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Z450 | 1 | AAGTACAGCATTGTCCACAGTCA | 23 | CAGGGAAACTGCTGATGTTG | 20 | 148 |
| 132 | 170 |
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Z728 | 1 | GTGGTCATGTGACACAGGATG | 21 | GCTCTTACAGTCCTGAGAACAGC | 23 | 204 |
| 202 |
|
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Z1142 | 1 | CTTCACAGATTATATCCTACAA | 22 | GTTTAGCGGCTTTTGCATCTG | 21 | NA | NA | NA | NA |
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Z1154 | 1 | TCATGATTGTTTGGAATGTAATAGTG | 26 | TTGAGCGGTAGTCTTCTACGC | 21 | 130 |
| 138 | 202 |
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Z1173 | 1 | CAACAGTGATCACACCGACC | 20 | CTGCCCTTCTCTGAATCAGG | 20 | 105 |
| 107 | 115 |
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Z1351 | 1 | GGTTAGTGATCAGTTAAGCAATTAGTG | 27 | CTTTCTGAAACAGGGCCAAG | 20 | 138 | 164 | 222 |
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Z1368 | 1 | TTCTGCATGTGCGAGCAT | 18 | AGCTGCATCTTGTGTCTAGCTG | 22 | 99 | 103 | 97 |
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Z1463 | 1 | GTGAGGTCATCCAAATAAATCTCC | 24 | GCATTCAACCCCTGCATC | 18 | NA | NA | NA | NA |
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Z1705 | 1 | CCACAGCGGACACTTTGAACC | 21 | CAAGGTTTACCACGGGACTGA | 21 | NA | NA | NA | NA |
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Z1781 | 1 | GCTCTGGCAGATTCCAAATTCC | 22 | AAGGGTCAGCTGCAGGGGT | 19 | NA | NA | NA | NA |
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Z1986 | 1 | GCTGCAGCGCTGGTCACCAT | 20 | GCTGTGGCGACCCTGGATTA | 20 | NA | NA | NA | NA |
| |
Z3099 | 1 | TTCTCCCGGAGTTTACATGCTG | 22 | TTTGGTTCCTGTCAGATGCCA | 21 | NA | NA | NA | NA |
|
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Z3417 | 1 | TGAAAATAGGGTGCGTCTCCTT | 22 | GCGCACATCCATTTCTCGTG | 20 | 134 |
| 116 | 132 |
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Z3705 | 1 | TTGTGATTTTTGGGCTTAGGGG | 22 | TGTGCACCGTACTGTTTTTGGA | 22 | NA | NA | NA | NA |
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Z3766 | 1 | ACGCCTGCATCTGATGGTCA | 20 | TCCATGCACAAAATCTCTTGCA | 22 | 168 |
| 174 |
|
| |
Z3837 | 1 | TGACTGCTGGAGCACAGATGC | 21 | GCATTTCTGAACAGCCCTCC | 20 | NA | NA | NA | NA | Use at your |
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Z3953 | 1 | ATGCACATTACAACCTCGAGG | 21 | ATGTGTTCGCTATTTCCATGC | 21 | NA | NA | NA | NA |
| |
Z4593 | 1 | GCGGTCAGTTGTTGATCAGTGC | 22 | CGTGCATGAAGCGGAAGATG | 20 | NA | NA | NA | NA |
| |
Z4764 | 1 | CCCCTAACTGTTGACCGGTA | 20 | AAGAGTGAGTCTGGGTCTCCTG | 22 | NA | NA | NA | NA |
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Z5024 | 1 | TGCCGTTCAGGGACTTCAAA | 20 | ATCTGGTGGCTGCCAAATAACA | 22 | 150 |
| 244 |
|
| |
Z5058 | 1 | CTGACGAGAACGGTGAACATGC | 22 | GCTCAGGGTTTGGAGGATGTG | 21 | 18 |
| 177 | 195 |
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Z5370 | 1 | GCCATCCAGAGCCAGAGATACA | 22 | ATACTGACCAGCGGGAAACTCC | 22 | NA | NA | NA | NA |
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Z5500 | 1 | TTTTGTGGATGTCCTCGGCC | 20 | ACTCGCCTGCATGAAGCAGA | 20 | NA | NA | NA | NA | Use at your |
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Z5508 | 1 | TAGCGTGCCATGCGTTTTTG | 20 | GATGTTCCTGCCTTATCGGCC | 21 | NA | NA | NA | NA |
| |
Z6177 | 1 | ATCACTGCAGGAGGCACAG | 19 | TATGGCCCACGATAATCAAT | 20 | 163 |
| 157 |
|
| |
Z6223 | 1 | TCAGGTGACTGACAGCAAAG | 20 | TGGTGAACATGGTCCCATC | 19 | 207 |
| 219 | 231 |
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Z6283 | 1 | TCAACACGCTTTATAGGGGG | 20 | TTGTGACGCCTCTGACTGTC | 20 | NA | NA | NA | NA |
| |
Z6368 | 1 | TGTCCTATAGCCTCGCACG | 19 | CCGTGATCAATCATCTGCAC | 20 | 188 |
| 154 |
|
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Z6384 | 1 | GTGCTTCCTCCTCAGTGTTTG | 21 | CGGTCGCTGATCTGATGTTA | 20 | 152 |
| 124 | 140 |
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Z6403 | 1 | TGCTCAAGGACTGATTTTATGG | 22 | TGGTTGATACAGGTGGCAGA | 20 | 236 |
| 230 | 284 |
| |
Z6411 | 1 | TGAGAACACATTGCTACGACG | 21 | ACCCCCAGAGGCATAACAG | 19 | 274 |
| 258 | 290 |
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Z6415 | 1 | TTGTTAGATCACCCTGTTGTCG | 22 | CAGACGGTTAAAAGCCAAGC | 20 | 187 |
| 241 | 339 |
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Z6416 | 1 | TCCCACTTCCTCCTGCAG | 18 | TTTGATCTGTTCATCCTGATGC | 22 | 137 |
| 167 |
|
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Z6422 | 1 | GCATGGTCATGATGGCTTC | 19 | GGTATCCAGCATGTGACAGTG | 21 | 165 |
| 163 | 175 |
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Z6592 | 1 | CTGTTTTACACACGTGGCTCA | 21 | TCTATCTAACACACGGCAGGG | 21 | 173 |
| 143 | 159 |
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Z6643 | 1 | GCACAGTTGTCAATGTTGTGG | 21 | CTCAACACAGCGTAAACGTCA | 21 | 221 | ? | 211 |
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Z6775 | 1 | AGCGTATGGAGCGGTGAG | 18 | CAGTTCACCCATGACCGTC | 19 | 217 |
| 273 | 311 |
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Z6776 | 1 | GCCAAAGAGAGGCTCATCAC | 20 | TCTGGCAGATTCCAAATTCC | 20 | 117 |
| 115 | 119 |
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Z6802 | 1 | AGACTGAAGTGCACTGTTGTCC | 22 | CTCCGACGCGATCATATTAA | 20 | 233 |
| 241 |
|
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Z6911 | 1 | TGTGACGGGAACAAGTGAGA | 20 | GTTTATGGCCATGCACGAG | 19 | ? |
| ? | n |
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Z6974 | 1 | AGAACTGGTTCAAGTCAGAGCC | 22 | TTTAGGGGCCCAGTAGTGTG | 20 | ? |
| ? | ? |
| |
Z7141 | 1 | TGGAGTCTAATGACTGCTTGTG | 22 | TGGCCATCTTTGTTTTGACA | 20 | 235 |
| 183 | 219 |
| |
Z7287 | 1 | TAATTGAGCCTCACCCGC | 18 | TGTGACAATACACTCGCTGATG | 22 | 227 |
| 235 | 243 |
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Z7353 | 1 | GGTGGAGCGGTGATTTATGT | 20 | TTCTGTGGAAGAGTGTTGACTGA | 23 | 193 |
| 235 |
|
| |
Z7476 | 1 | TGGAGAACAAGGCAAGCC | 18 | ATTCCAATGTCTTTTTAAGCGA | 22 | 139 |
| 137 | 141 |
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Z7573 | 1 | TGTTGCACCATATTGTGGCT | 20 | TCCTGGCGATGAAAGAGC | 18 | 204 |
| 198 | 210 |
| |
Z7928 | 1 | TTGTTCCTCCAGACATTCCC | 20 | ATACACGCTGACCAAATGCA | 20 | 269 |
| 201 | n |
| |
Z8613 | 1 | CATGTGAACCACTCGTAACCA | 21 | AAGACATGATTACCCGCTGG | 20 | 120 |
| 136 |
|
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Z8678 | 1 | TGAACAAATGGTCGCATGTT | 20 | ACTTTTCCATCTGCTGCTCC | 20 | 205 |
| 201 | 203 |
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Z8718 | 1 | ACATGAGCAGTTGGAGTGCA | 20 | CTGAAGGACAAAGCCCAGAC | 20 | 164 |
| 156 | 158 |
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Z8874 | 1 | TGTGTCATCTGCTTTTGTCTGA | 22 | ACTGCTGTGAAGTCCACACG | 20 | 97 |
| 99 |
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Z9042 | 1 | TGGAGCAGGAATTTAATGCC | 20 | TCTCCTGATACAGGGCTGCT | 20 | NA | NA | NA | NA |
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Z9125 | 1 | CCCCACATCCTAACAGGAGA | 20 | GTCGTTCAGATGAGAGCTTTTG | 22 | 168 |
| 186 | 206 |
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Z9158 | 1 | TAGATCTCTCGCTCCACCGT | 20 | TGCCGCATGACTGTACTGTA | 20 | 238 | 256 | 228 | 244 |
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Z9217 | 1 | GCCCAGCCCTCTGTACATTA | 20 | AGGAGAATCGCCATTTCTTG | 20 | 143 | 165 | 157 | 163 |
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Z9250 | 1 | TTCTTTCCAAACTGCAACCC | 20 | GCGAGAGACCCAGATCTATCC | 21 | 211 |
| 209 | 215 |
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Z9294 | 1 | TAGTGCACACCAAAAGGCTG | 20 | ATCCATGTTTACAGCCTTGAGA | 22 | 123 |
| 127 | 133 |
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Z9367 | 1 | CTGAGGTCGGTTATTTAGGCC | 21 | CATTGCTTTGCCCTCAGAAT | 20 | 150 |
| 144 | 146 |
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Z9382 | 1 | GTAAGTGTGTGTGCGCACCT | 20 | TCTGACTACTGAACCATCAGCG | 22 | 138 | 146 | 154 |
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Z9394 | 1 | GGCCTCACACAATTTCAAAT | 20 | GAGACGAGCAGAAGTCCCTG | 20 | 237 | 277 | 245 | 273 |
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Z9395 | 1 | ACGATGGTGTAGAACCACTGC | 21 | TCACCCTCCTACCTGTCCAC | 20 | 258 |
| 262 | 264 |
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Z9409 | 1 | CACAGACACTGAGGACGTTCA | 21 | CGTATTAACACGGATGTGCG | 20 | 184 |
| 180 | 202 |
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Z9704 | 1 | CACGATGGCACAAAAATCTG | 20 | AAATCTTGGATGCGTATCGG | 20 | ? |
| ? | ? |
| |
Z9791 | 1 | TCAGAAAGGTCAGGGGTCAG | 20 | AGAAGAGCGTCTGTCGGTGT | 20 | 279 |
| 215 | 221 |
| |
Z9886 | 1 | GCTCCAGATACGCGCAAC | 18 | CCATTGTTGCAGAACCAGG | 19 | ? |
| ? | ? |
| |
Z9958 | 1 | ACTGGGCTGCCAGGTACA | 18 | GCAGTACACTCTGTCTGTCCG | 21 | 237 |
| 191 | 259 |
| |
Z9977 | 1 | AGTGTATGGCTATGCCCCAG | 20 | TTGTCAGAGGACTCTGGGCT | 20 | 197 |
| 189 | 199 |
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Z10124 | 1 | GCCAGGAAACTTGCTCTCAA | 20 | GTGGCAGTCATCAACTGCAG | 20 | 181 |
| 183 | 209 |
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Z10155 | 1 | TGACCCACTACCCTTTCTGG | 20 | CCCTGGCTGTCACCTTAGAG | 20 | 155 |
| 141 | 149 |
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Z10175 | 1 | GCATTTCGTCAAGGTCATGA | 20 | CACAGCCAGTGAATGCTGAC | 20 | 221 |
| 205 | 211 |
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Z10194 | 1 | TTGCAGAAATTTCCACTCCC | 20 | GCAAGAGAGCAGCTCAGGTAA | 21 | 206 |
| 146 | 160 |
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Z10246 | 1 | ACCCTCAGCACCTCAGAGAA | 20 | AATGTTGAATTCCGGCTGAC | 20 | 132 |
| 150 |
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Z10258 | 1 | CACACTGTAACCTGAGCCCA | 20 | GAACTCTGGTTCAAGGCAGC | 20 | 251 |
| 259 | 265 |
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Z10315 | 1 | TGTGCACTAACACACGCAGA | 20 | TGATCAACTCTCACTTGAGTTTG | 23 | 255 |
| 179 |
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Z10340 | 1 | CTGCACACGGTGTGTAAACC | 20 | GTAATTGATTGGCGCGATTT | 20 | 218 |
| 284 |
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Z10551 | 1 | ACACCAGAGAGCGTGTGATG | 20 | AGCAGGAACCGTCAGCTTTA | 20 | 223 | 257 | 219 | 237 |
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Z10888 | 1 | CAAAGGCTTTGGATTTGGAA | 20 | TGTTATCCCAGGAGCCAGTC | 20 | 242 | 270 | 212 | 230 |
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Z10978 | 1 | AAGAGTGAAAGCAGCGGAAA | 20 | AAGTCCCTCTCAGCAGTGGA | 20 | 196 |
| 166 | 176 |
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Z11154 | 1 | GATCGGGATTTCAAAGCAGA | 20 | GAGCGAAACGAAAGAAGTGC | 20 | 258 |
| 262 |
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Z11266 | 1 | CAGAGCGGGAGTCTATCCTG | 20 | CTTGGTGTGTCCTGACCCTT | 20 | 134 |
| 102 | 106 |
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Z11369 | 1 | GGGTAATATTGCACTTAGCCAGA | 23 | AACAAAAACCGTCTTGCCAC | 20 | 261 |
| 229 | 271 |
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Z11464 | 1 | CGAGCATGAGGACAAAAGTG | 20 | TCCATGTGCTGTGACCAAGT | 20 | 198 | 210 | 192 | 216 |
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Z11618 | 1 | TGAGTGGGTGTAGAGGGACA | 20 | GATAAGGGGCCTCTTGGTTC | 20 | 111 |
| 95 | 109 |
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Z11748 | 1 | GGCTTTTTGGGTTTTAATCCA | 21 | GGGAAATCCTGGAGGGTCTA | 20 | ? |
| ? | ? |
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Z11859 | 1 | TTTCATCTGTTTGCAGGTGC | 20 | GACCCCAGCAATGTTGAGAT | 20 | 194 |
| 198 | 250 |
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Z11913 | 1 | TGGAGTAACTGCAGCAGTCG | 20 | TCGAATCAGAGTGTGAAGCG | 20 | ? |
| ? |
|
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Z13296 | 1 | TCTGAGTGCACCAAATGAGTG | 21 | AGTTGGGTCAAACCCATGTC | 20 | 88 | 90 | 76 |
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Z13333 | 1 | CTGCTGTCTGTCACAGAGCC | 20 | ATGACCAAACACAGGTTCCC | 20 | 248 |
| 258 |
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Z13452 | 1 | CTCTGCCAGGTGCTTTTCTC | 20 | GTGTTGTCAGCTGACCCTCA | 20 | 220 |
| 224 | n |
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Z13615 | 1 | TCCGTCTCCACCTCTATTTCA | 21 | CCACAGGTGGTGTCACACTC | 20 | 153 |
| 139 | 151 |
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Z13724 | 1 | AGCGCATGGTGAAATAGGTC | 20 | TGACACCTCCATACCAGCTG | 20 | 152 |
| 176 | 238 |
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Z14078 | 1 | AAATGGCTCCATCACTGCTC | 20 | CCAAGACTTGGAGACCTTGA | 20 | ? |
| ? | ? |
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Z20062 | 1 | GCTTTAGAGAGCTCAGCGGA | 20 | CACACACATTTTCACGACCC | 20 | 208 |
| 222 | 238 |
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Z20950 | 1 | GGGTATTGGAAGTTGCGAAA | 20 | TTTCCAAACACACTTGTGCG | 20 | 107 | 159 | 105 |
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Z21260 | 1 | GCCAGATGACCATCTCAGCT | 20 | TGCAGTGCTCATAGGACCTG | 20 | 244 |
| 224 |
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Z21375 | 1 | GAGTCTCCACCTCACGCTTC | 20 | ACCACAGGTGAATGCCACA | 19 | 200 |
| 198 | 208 |
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Z21408 | 1 | AGAGGAAGTCAACAGTACATGCA | 23 | AGTCCACGGATGTCCTGTTT | 20 | 299 | 399 | 269 | 319 |
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Z21548 | 1 | CCACTCTACCCTCCTCTTGAA | 21 | ACCCTAGCAAGGCTGGAGAT | 20 | 244 |
| 246 |
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Z21576 | 1 | GCTGCTCTAAACAGACGTGCT | 21 | GCCGCTTACCTCGTTTATTG | 20 | NA | NA | NA | NA |
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Z21746 | 1 | ATCAGAGTTACCATTGGCCC | 20 | GCTGCTCATCTGCTGCTGTA | 20 | 121 |
| 123 | 125 |
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Z22168 | 1 | GGACCTGAAAGAGAACAGCG | 20 | GTGTGCGGATTACCGAGTTT | 20 | 299 |
| 277 |
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Z22319 | 1 | CGGACTAATAAGCGCTTTCG | 20 | CACCTGCCTCTCTCACACAA | 20 | 244 |
| 232 | 264 |
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Z22347 | 1 | GAGCAGCAGAGAGCAGGAGT | 20 | TTGGTGTTTGCTGTCCTCTG | 20 | 148 |
| 128 | 130 |
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Z22526 | 1 | TCTCCCTCAGGGTTCTGATG | 20 | GCTTACCTGCTGTCCTGGAG | 20 | 225 |
| 213 |
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Z22709 | 1 | ATTTCAGACCTGTGGGAAGC | 20 | AACCACCAGCCTCTGAGAGA | 20 | NA | NA | NA | NA |
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Z22986 | 1 | TAAGGGCGGATGGTAGTTTG | 20 | CATAACAGCAGCCCAACAGA | 20 | NA | NA | NA | NA |
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Z23059 | 1 | AAGGCAGGTAAAAATGCCCT | 20 | CAGTGGGTGGAAAAAGGAAA | 20 | NA | NA | NA | NA |
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Legend
Table generated Wed Oct 7 16:28:07 1998
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