Zebrafish Genetic Map: Primers Page
This table contains the primer sequences for the microsatellite markers on the zebrafish genetic linkage map, as published in Nature Genetics: A Microsatellite Genetic Linkage Map for Zebrafish (Danio rerio), Ela W. Knapik, et al.
The primers are available from Research Genetics.
Primer |
LG |
Forward sequence |
Bases |
Reverse sequence |
Bases |
PCR Product Size |
|---|---|---|---|---|---|---|
BMP4 |
17 |
CTGTGAGGAGCTTCCATCACGAA |
23 |
GGAATCGGCAGAGGCTGTCTCC |
22 |
160 |
msxD |
21 |
AGCTCCGTCTTCACTGACTGACA |
23 |
TGTGGTGGACATTAACTCATCCA |
23 |
240 |
Z4 |
14 |
TCAGAGGAGCGCATGAAAGT |
20 |
CTGAAAACACCCATCACGTG |
20 |
119 |
Z7 |
19 |
TCATGAGCAGCGTTTTTCC |
19 |
AAAGCACCATCCCACAAAAC |
20 |
145 |
Z13 |
5 |
CACGTGCTGATGCAGGAC |
18 |
GATGACAGCCAATCAGAGCA |
20 |
144 |
Z16 |
21 |
ATACTCAAACACATCCCAGCC |
21 |
GAGGTGCACGTCAGCGAC |
18 |
150 |
Z18 |
21 |
CTCTTTTGCCTCCTCTCGG |
19 |
CAGCCTTAACACTGTGTCTGTG |
22 |
147 |
Z23 |
2 |
TGTAGATTAATGCTTTTCTGTGCA |
24 |
GCATATGAAGCAGGTCTGCA |
20 |
133 |
Z24 |
15 |
CACCTTCACGGTGAGTAGCA |
20 |
GTGGAATGGTGTGACTAATGTCA |
23 |
149 |
Z28 |
13 |
TCTGGTGGACTCGCTGAAG |
19 |
AAGTAAGCGCCACCAGAGTG |
20 |
141 |
Z37 |
15 |
GGTGTTCGCGACCAAGTC |
18 |
TTTGCGTGGAATTTGAACTG |
20 |
83 |
Z46 |
2 |
GCTGTGTGTGCCTCATCTGT |
20 |
GCAGACGCTGTACTCCATCA |
20 |
224 |
Z49 |
25 |
GATTATCCTCATAAGTACGGGCC |
23 |
AGCACATCTTCATCCTGCG |
19 |
216 |
Z106 |
9 |
GAGACCGACCGTCTGCTAAC |
20 |
TCCAGAGAACACCCTGCTG |
19 |
187 |
Z130 |
23 |
ACACGCTGGAGAGCCAAC |
18 |
CCAGAACCCACCTGGGAC |
18 |
104 |
Z140 |
8 |
ATTTGGCAGATTCCTTCATCA |
21 |
GGAACACCTGTGCCCGAG |
18 |
213 |
Z160 |
19 |
CGCTACCTGAAGGACACCAT |
20 |
CTGCTATTGCTATACTTGTGGGG |
23 |
240 |
Z164 |
1 |
TTGCTGTGTGTGTTTCTCAGTG |
22 |
TGTTCCATCGCTGAGAAGTG |
20 |
221 |
Z170 |
8 |
CTGAAAGTCTTCACATCTGTGACA |
24 |
GAATAAAGGTGGGGGGTGTT |
20 |
121 |
Z176 |
23 |
CTCCAGAACAGGTTAGACACACC |
23 |
CTGAACACCTCGAACCTTTACC |
22 |
219 |
Z177 |
7 |
GGAAACTCTCACGCTCGTTC |
20 |
ACGGATGTTCCTGTAAACGC |
20 |
143 |
Z178 |
22 |
ACCACAAGCGTGTGAGTCTG |
20 |
TTGACTGTGGCCTGCTGTAG |
20 |
108 |
Z191 |
7 |
AATATAGCGAAGGGACGATCC |
21 |
GAGGACTTCAGCAGAAACCG |
20 |
123 |
Z230 |
22 |
GGTTCTCCCACCAGCACTAA |
20 |
CGACTCAGACTTACTGGTGTGC |
22 |
141 |
Z233 |
25 |
CAGTTTTCGGGACCTCTGAG |
20 |
TGGATGAAGTTTACGGAGCC |
20 |
148 |
Z241 |
24 |
CAATTAAAGGTGCAGTGGAGC |
21 |
TTGGCCTCTGCTGTTTCTCT |
20 |
231 |
Z247 |
12 |
GATTTACCTGTTTCACAGCATCC |
23 |
CATCCTGAGATGTCATCTGATAGA |
24 |
242 |
Z249 |
24 |
TCTTCCCCTACAGGCACAGT |
20 |
ATGATACGCAGTCAACGTATCG |
22 |
147 |
Z265 |
6 |
CCTTCCCTCAAAGAGCGAG |
19 |
TGGAGTCGCTCATTAGCAAA |
20 |
113 |
Z266 |
17 |
TCCGGCTGACATGAGGAAT |
19 |
ACGCTCTGCTTCATGGTCTT |
20 |
212 |
Z342 |
23 |
CATTGAGTTTAGACCCCCACA |
21 |
TCACTTCTGCTTTATAAGGCACC |
23 |
163 |
Z355 |
10 |
CAGCCTGAGCACACAGAGAC |
20 |
GCACAGGCCTAATAAGACGC |
30 |
204 |
Z374 |
20 |
TTTTAATCCAGCAGCAGATCTG |
22 |
CCCAGGTTCACAAACCCTC |
19 |
166 |
Z379 |
5 |
AGCCTTTCACTGGCCCTATT |
20 |
CAAGGTGGAGTAAAAATCCTGC |
22 |
222 |
Z381 |
17 |
AAACGTTGTGATGTGATATTCCC |
23 |
TCTCCAGAAGCCTCGTGTG |
19 |
205 |
Z382A B |
7 7 |
GTGTCCGTTTTTTCGGTGTT |
20 |
TAGCACGCTAACGGCTAACA |
20 |
104 |
Z419 |
3 |
ATTATCCAGCACATGACGAGG |
21 |
TCTCGCTCCTCACCATCAC |
19 |
120 |
Z450 |
1 |
AAGTACAGCATTGTCCACAGTCA |
23 |
CAGGGAAACTGCTGATGTTG |
20 |
154 |
Z464 |
25 |
ACCTCCACACGGAAAGGAG |
19 |
GGTGATGAAAAATTAGCCTTCG |
22 |
156 |
Z470 |
15 |
GAGAGCCGAGGTGTGTATGC |
20 |
CACTGCCTATTACACCACTGATG |
23 |
139 |
Z531 |
10 |
GCAGGTTGCTCTGGTTTCTC |
20 |
TTTCCGATGACAGATCGTGA |
20 |
118 |
Z536 |
20 |
ATCCAGAGTGTGTCCCAGTTG |
21 |
AGGTGTGTCCCACTGACTCC |
20 |
118 |
Z540 |
21 |
GTGGCCGTCAGTTCAGCT |
18 |
CCTCCTGTCAGGTGAAGCTC |
20 |
127 |
Z553 |
19 |
GGCGTAATCCTCATTCCTGA |
20 |
CAAACTGTGTTGTGTGTTTTTCTG |
24 |
209 |
Z559 |
9 |
ACCCGGCTGTAGTGAAACC |
19 |
CCTCTCTGCCCTCCTCTTG |
19 |
114 |
Z562 |
9 |
TGTACTTCTCTCTCAATACACCGG |
24 |
AGGCCTCTGATTAACTGAATTACA |
24 |
207 |
Z618 |
14 |
CCTTTCACACTATACAGCGTATCA |
24 |
TCTTCTGGGGTTTACTGCTCA |
21 |
165 |
Z643 |
23 |
AGGCTGGGCTATAATGCTGA |
20 |
TAACGAGTCTGTGTTTCGCG |
20 |
241 |
Z644 |
2 |
CACGGACAATCCAGTGTACG |
20 |
GCAACAGTATAAGACTGTCTTGGG |
24 |
144 |
Z647 |
5 |
GTGAGAGGTACGGCAGGAGA |
20 |
AAACAACCCTGCATCCACTC |
20 |
249 |
Z652 |
17 |
AGAGAGTGAGCTCTGGAACCC |
21 |
CACTCTTGAAGATGGCAGAGG |
21 |
132 |
Z669 |
22 |
GTGTGTGATGTTGTGTTTGTCG |
22 |
GGGGTCACTTCTGTTTACAAGC |
22 |
137 |
Z684 |
22 |
GCTACAGCTCGCCTGTGTG |
19 |
ATCCGATACAGCCCGAGTC |
19 |
89 |
Z685 |
11 |
GGTGCTCGCAGGTGTTAATT |
20 |
CCAGGGCGTGATGTACTTTT |
20 |
204 |
Z697 |
14 |
AAAGTGTTACCGGGCAACAG |
20 |
GGGTTAGCATGTGGGCTG |
18 |
114 |
Z699 |
16 |
CTTGTGAACGTAGCCGTTGA |
20 |
TAAAACCACACACGAGCAGC |
20 |
209 |
Z720 |
23 |
ACTCTCAACATGAAGTGCTTTCC |
23 |
ACAGGGAATGAGCTGAGAACA |
21 |
145 |
Z722 |
21 |
AACTGAATGACTATGGGCGC |
20 |
TCTTCTTGGTAACCAGACAAAGC |
23 |
101 |
Z728 |
1 |
GTGGTCATGTGACACAGGATG |
21 |
GCTCTTACAGTCCTGAGAACAGC |
23 |
204 |
Z732 |
15 |
GTGCCTTCCGTTACCTTCAC |
20 |
TTTTAAGGAAAAAAAGTGAATGCA |
24 |
133 |
Z737 |
18 |
AACACTTGATATTGCATGACGG |
22 |
ATGTTGGTTAGCATGCACCA |
20 |
126 |
Z740 |
6 |
AAACTTTGCTGCTCTTCCTCC |
21 |
CTCTGTCAGGTCCTGTGATCC |
21 |
203 |
Z744 |
10 |
TATACTGCTTATTGGTGAAATCCG |
24 |
CTGTACAGCCCAGACAAGAGC |
21 |
149 |
Z787 |
25 |
GCTGCGTGATATTCATGGG |
19 |
CTGTATCCTGCTATACAGCCCC |
22 |
111 |
Z789 |
8 |
CTCCTGCTGGCCCAGTAAT |
19 |
ACTGAACATTCAGGCTTAAATGC |
23 |
203 |
Z793 |
6 |
TGGTGAAATTTTGGACAGCA |
20 |
CAAGGACCAAATGGAAGGAA |
20 |
205 |
Z811 |
16 |
CCATGTGGGTGGAAAAGACT |
20 |
CTGTCTTTCAGTTTTGCTTATGTG |
24 |
175 |
Z818 |
13 |
CATGGCTTTACTGCTCTGAGC |
21 |
CTTGTGCTCAAACTGAACACTG |
22 |
147 |
Z846 |
15 |
CCTCTCAGTCTCCATCACCTG |
21 |
GTGTGTGCTATAATGCCATTGG |
22 |
94 |
Z851 |
2 |
ACAGTCTTTACTCCGCAATAATCC |
24 |
ACTGAAGAGGAGGACCAGAGC |
22 |
142 |
Z852 |
17 |
CCAGACTAACCAGACCTGAACC |
22 |
GAACATACCTGAACAGAAAACACG |
24 |
215 |
Z854 |
9 |
TCTTCTGAATCCTCACTCAGAGC |
23 |
CCATAATGCATTTGGGGAAG |
20 |
139 |
Z858 |
15 |
CTTCCACATGGTCATTATGGG |
21 |
AACCAGTGGAGCGACCAG |
18 |
209 |
Z868 |
11 |
GATCTCCCTAATTATAGCACTCGC |
24 |
TCATCGCATCTGCAGTCAG |
19 |
128 |
Z870 |
8 |
TTCCGGCTCTCAGTGTCTTT |
20 |
CCTGACCAGCATAGAGTCATG |
21 |
193 |
Z872 |
3 |
CTTAAAGCCCAGTGAGGCAC |
20 |
ATGCCTGGTAATGAGCAGCT |
20 |
220 |
Z879 |
14 |
TGAGGAGGTTTGTCACCACA |
20 |
TGAAAAAAACACCAAGCGC |
19 |
203 |
Z880 |
6 |
TGATCTGAGACGTCTGCCG |
19 |
GCGCTCTGACAGTGCTTACA |
20 |
150 |
Z896 |
5 |
ACAACCACAGCATGACCTCA |
20 |
ACAAGTGCTGCAGAAGATGTATG |
23 |
139 |
Z911 |
24 |
GCTGCTTGTGGTGTGAAAAA |
20 |
TAATTTCATTCCACCTGCTGG |
21 |
126 |
Z916 |
9 |
GGATCTGTTCAGCCACTGAA |
20 |
TCACCTGATCACCATGCAGT |
20 |
150 |
Z928 |
18 |
CCAGAGTACTCGATCTGTCTTGA |
23 |
ACACCTTCGGCAGTTTTCAC |
20 |
134 |
Z937 |
12 |
AGAGCTAGCGCTGAGCTAACA |
21 |
TCTCTCTGTTCATCAGCAGCA |
21 |
137 |
Z938 |
22 |
CAGACGGACAAGTGGAGGAT |
20 |
CAAATGCTTCTCACTTCCTCG |
21 |
206 |
Z940 |
15 |
CTGCTAACCAAATGCAGAAGC |
21 |
TAACCTGATGGAAAATCACACG |
22 |
121 |
Z953 |
21 |
AGAAAAGAGTGAGGACTGTGTGC |
23 |
TGCGAGTTGACAGCCTGTAC |
20 |
98 |
Z963 |
3 |
ACTGGCACTTCACGCTCC |
18 |
TCTCACACTGAGTGCTAAACGG |
22 |
201 |
Z974 |
14 |
AGCTCCAGCCCTACAACTACC |
21 |
TGAAGTTCAGACTAATGATCTCGC |
24 |
206 |
Z975 |
25 |
ACCTGTGTCATACCCATGTCA |
21 |
CTGGTGTCCCCCACAGTC |
18 |
150 |
Z984 |
4 |
TTTCTCAGAGCACAACCTTTAAC |
23 |
GAGAGCAAACTCCAGCTGCT |
20 |
200 |
Z987 |
8 |
TCTGGTTTCACATTAACATGTGC |
23 |
ATCTGCTATCGGCTCTGTTAGC |
22 |
235 |
Z992 |
16 |
TTGACGTAGTTTGTGCGTTTG |
21 |
CAATCAGAGCAGGAGGCG |
18 |
150 |
Z1050 |
6 |
ACTCTGAGTCTGCAGTCCCG |
20 |
AACTGCTGCAGTTAATTATTGC |
22 |
145 |
Z1052 |
8 |
CCCATTGGAACTGAGACACCTT |
22 |
ACAGGGGGGGCTAATAATTCTG |
22 |
138 |
Z1059 |
7 |
AACAGGTGACAGAGCACACG |
20 |
GGGAGAGGGCAGGACAATAT |
20 |
150 |
Z1061 |
24 |
CATCGCTGGTTACTGCTGG |
19 |
TCTCTATTATAAGCCTCCTCACCG |
24 |
102 |
Z1068 |
8 |
GGTGAGAAACACAAGAGCAGC |
21 |
CAGACCCAGATTCTTCAGCC |
20 |
132 |
Z1136 |
18 |
TCATGTGAAGCCTGCAGTTC |
20 |
AGCTTCAGCTGTTTAAAGGTGC |
22 |
105 |
Z1138 |
6 |
GAACGACGGCACTCTATCCG |
20 |
TTGCAGCCTTAGTGTAAACGAA |
22 |
151 |
Z1140 |
3 |
CGCTTCAGCCTCAATCTCTC |
20 |
TGTAGCTTTCTGGGCCTGAT |
20 |
197 |
Z1141 |
12 |
TCTGTCCTGTGCGCAGAG |
18 |
AGTTCCAGTGCAGACGGTG |
19 |
138 |
Z1144 |
18 |
CTCCTCTCCGGGATACACAC |
20 |
ACCACGAGTCTGAGTGCTGA |
20 |
249 |
Z1145 |
10 |
GGGAACGACCCTTTTCAATT |
20 |
TCCAAGTTGGCATAGATGTATCT |
23 |
199 |
Z1146 |
12 |
ATGCCACCCCTCTCCTTC |
18 |
TGCCAACATGCTAACAATATCC |
22 |
144 |
Z1148 |
22 |
GGCTACACCTCAAACGCTTC |
20 |
CAACACCTGATCAAACGCC |
19 |
200 |
Z1154 |
1 |
TCATGATTGTTTGGAATGTAATAGTG |
26 |
TTGAGCGGTAGTCTTCTACGC |
21 |
130 |
Z1159 |
2 |
CGCTAATGACTAGCGTGACG |
20 |
ATAACCACAGTGATAAACGCA |
21 |
140 |
Z1162 |
21 |
TTTATTAATATTCTGTGCTGGGC |
23 |
GCCGGAAAGACACCTTCATA |
20 |
131 |
Z1167 |
5 |
TCCCTTTGTAACATCGGCTC |
20 |
AAGCCCCGACTACTGTCTGA |
20 |
189 |
Z1173 |
1 |
CAACAGTGATCACACCGACC |
20 |
CTGCCCTTCTCTGAATCAGG |
20 |
123 |
Z1176 |
12 |
GAGGATTTAATCATCATTTGCTCC |
24 |
AAACACCACGATCAGCAGC |
19 |
125 |
Z1179 |
12 |
CAGGGAACCGTCACATTCAGC |
21 |
TCTGCAGACTCCCACTGACCC |
21 |
198 |
Z1182 |
7 |
GAGCAGACACTTTACATTTTGTGG |
24 |
GACACTTACAAAGAGTCTTTCATTTCC |
27 |
147 |
Z1183 |
3 |
CCGCGGAAGATTAATCAGAC |
20 |
AGATTCACTCCGTGCTCCAT |
20 |
139 |
Z1185 |
3 |
CAGCAGGAACGAGGACGTCA |
20 |
GGGTGGGGTTAGGGCAATAG |
20 |
248 |
Z1191 |
3 |
TCAGAACTCCAGCCACCAG |
19 |
TGGATATACTTTATCCCTAACTGAACG |
27 |
146 |
Z1195 |
15 |
AACCCACACCGTCACATCGT |
20 |
ATACGCCACTGACGAGAAGTGG |
22 |
173 |
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