Linkage Group 01 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker Number |
Linkage Group |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 Size |
AB_2 Size |
In_1 Size |
In_2 Size |
Comments |
dbSTS Accession |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z164 |
1 |
TTGCTGTGTGTGTTTCTCAGTG |
22 |
TGTTCCATCGCTGAGAAGTG |
20 |
NA |
NA |
NA |
NA |
|
|
Z450 |
1 |
AAGTACAGCATTGTCCACAGTCA |
23 |
CAGGGAAACTGCTGATGTTG |
20 |
148 |
|
132 |
170 |
|
|
Z728 |
1 |
GTGGTCATGTGACACAGGATG |
21 |
GCTCTTACAGTCCTGAGAACAGC |
23 |
204 |
|
202 |
|
|
|
Z1142 |
1 |
CTTCACAGATTATATCCTACAA |
22 |
GTTTAGCGGCTTTTGCATCTG |
21 |
NA |
NA |
NA |
NA |
|
|
Z1154 |
1 |
TCATGATTGTTTGGAATGTAATAGTG |
26 |
TTGAGCGGTAGTCTTCTACGC |
21 |
130 |
|
138 |
202 |
|
|
Z1173 |
1 |
CAACAGTGATCACACCGACC |
20 |
CTGCCCTTCTCTGAATCAGG |
20 |
105 |
|
107 |
115 |
|
|
Z1351 |
1 |
GGTTAGTGATCAGTTAAGCAATTAGTG |
27 |
CTTTCTGAAACAGGGCCAAG |
20 |
138 |
164 |
222 |
|
|
|
Z1368 |
1 |
TTCTGCATGTGCGAGCAT |
18 |
AGCTGCATCTTGTGTCTAGCTG |
22 |
99 |
103 |
97 |
|
|
|
Z1463 |
1 |
GTGAGGTCATCCAAATAAATCTCC |
24 |
GCATTCAACCCCTGCATC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1705 |
1 |
CCACAGCGGACACTTTGAACC |
21 |
CAAGGTTTACCACGGGACTGA |
21 |
NA |
NA |
NA |
NA |
|
|
Z1781 |
1 |
GCTCTGGCAGATTCCAAATTCC |
22 |
AAGGGTCAGCTGCAGGGGT |
19 |
NA |
NA |
NA |
NA |
|
|
Z1986 |
1 |
GCTGCAGCGCTGGTCACCAT |
20 |
GCTGTGGCGACCCTGGATTA |
20 |
NA |
NA |
NA |
NA |
|
|
Z3099 |
1 |
TTCTCCCGGAGTTTACATGCTG |
22 |
TTTGGTTCCTGTCAGATGCCA |
21 |
NA |
NA |
NA |
NA |
|
|
Z3417 |
1 |
TGAAAATAGGGTGCGTCTCCTT |
22 |
GCGCACATCCATTTCTCGTG |
20 |
134 |
|
116 |
132 |
|
|
Z3705 |
1 |
TTGTGATTTTTGGGCTTAGGGG |
22 |
TGTGCACCGTACTGTTTTTGGA |
22 |
NA |
NA |
NA |
NA |
|
|
Z3766 |
1 |
ACGCCTGCATCTGATGGTCA |
20 |
TCCATGCACAAAATCTCTTGCA |
22 |
168 |
|
174 |
|
|
|
Z3837 |
1 |
TGACTGCTGGAGCACAGATGC |
21 |
GCATTTCTGAACAGCCCTCC |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z3953 |
1 |
ATGCACATTACAACCTCGAGG |
21 |
ATGTGTTCGCTATTTCCATGC |
21 |
NA |
NA |
NA |
NA |
|
|
Z4593 |
1 |
GCGGTCAGTTGTTGATCAGTGC |
22 |
CGTGCATGAAGCGGAAGATG |
20 |
NA |
NA |
NA |
NA |
|
|
Z4764 |
1 |
CCCCTAACTGTTGACCGGTA |
20 |
AAGAGTGAGTCTGGGTCTCCTG |
22 |
NA |
NA |
NA |
NA |
|
|
Z5024 |
1 |
TGCCGTTCAGGGACTTCAAA |
20 |
ATCTGGTGGCTGCCAAATAACA |
22 |
150 |
|
244 |
|
|
|
Z5058 |
1 |
CTGACGAGAACGGTGAACATGC |
22 |
GCTCAGGGTTTGGAGGATGTG |
21 |
18 |
|
177 |
195 |
|
|
Z5370 |
1 |
GCCATCCAGAGCCAGAGATACA |
22 |
ATACTGACCAGCGGGAAACTCC |
22 |
NA |
NA |
NA |
NA |
|
|
Z5500 |
1 |
TTTTGTGGATGTCCTCGGCC |
20 |
ACTCGCCTGCATGAAGCAGA |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5508 |
1 |
TAGCGTGCCATGCGTTTTTG |
20 |
GATGTTCCTGCCTTATCGGCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z6177 |
1 |
ATCACTGCAGGAGGCACAG |
19 |
TATGGCCCACGATAATCAAT |
20 |
163 |
|
157 |
|
|
|
Z6223 |
1 |
TCAGGTGACTGACAGCAAAG |
20 |
TGGTGAACATGGTCCCATC |
19 |
207 |
|
219 |
231 |
|
|
Z6283 |
1 |
TCAACACGCTTTATAGGGGG |
20 |
TTGTGACGCCTCTGACTGTC |
20 |
NA |
NA |
NA |
NA |
|
|
Z6368 |
1 |
TGTCCTATAGCCTCGCACG |
19 |
CCGTGATCAATCATCTGCAC |
20 |
188 |
|
154 |
|
|
|
Z6384 |
1 |
GTGCTTCCTCCTCAGTGTTTG |
21 |
CGGTCGCTGATCTGATGTTA |
20 |
152 |
|
124 |
140 |
|
|
Z6403 |
1 |
TGCTCAAGGACTGATTTTATGG |
22 |
TGGTTGATACAGGTGGCAGA |
20 |
236 |
|
230 |
284 |
|
|
Z6411 |
1 |
TGAGAACACATTGCTACGACG |
21 |
ACCCCCAGAGGCATAACAG |
19 |
274 |
|
258 |
290 |
|
|
Z6415 |
1 |
TTGTTAGATCACCCTGTTGTCG |
22 |
CAGACGGTTAAAAGCCAAGC |
20 |
187 |
|
241 |
339 |
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Legend
