Linkage Group 11 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z6337A |
11 |
TGCAGCGCATGACAGAGTAT |
20 |
TGAACATCCCTCATTCCACA |
20 |
94 |
|
96 |
100 |
|
|
Z685 |
11 |
GGTGCTCGCAGGTGTTAATT |
20 |
CCAGGGCGTGATGTACTTTT |
20 |
NA |
NA |
NA |
NA |
|
G41415 |
Z868 |
11 |
GATCTCCCTAATTATAGCACTCGC |
24 |
TCATCGCATCTGCAGTCAG |
19 |
128 |
|
114 |
|
|
G41423 |
Z1266 |
11 |
GGTAAGAGAATCACGCGCTC |
20 |
GAAACACTCGATGACATTCAATG |
23 |
NA |
NA |
NA |
NA |
|
G39992 |
Z1393 |
11 |
AAGCCCATAATCTGAAAACAGC |
22 |
TATACAAACAGGTACTGCTGCTCC |
24 |
NA |
NA |
NA |
NA |
|
G41359 |
Z1445 |
11 |
CCATTTGTTTAAAAGTTTCCTA |
22 |
CGTGAGTCCTCCACATCATGC |
21 |
NA |
NA |
NA |
NA |
|
G41373 |
Z1590 |
11 |
CATGTGGCCACAGCAGAC |
18 |
CAGAGCCAGAGCACTCCTG |
19 |
NA |
NA |
NA |
NA |
|
G40130 |
Z1653 |
11 |
TCGATGACATTCAATGACAGCA |
22 |
CGGGTAAGAGAATAACGCGCT |
21 |
NA |
NA |
NA |
NA |
|
G41400 |
Z3218 |
11 |
TTTCACTTTCGGAGTTTGCATG |
22 |
GCTGGAAGACTGGAAACATCCA |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z3362 |
11 |
AAGAAGCCCTGAGGACAACA |
20 |
GCCATTGACTGTGCCTGAG |
19 |
152 |
166 |
168 |
232 |
|
|
Z3412 |
11 |
AGGCAAACAGAAGCATTTGGC |
21 |
GGAAAGTCCAAGTACCTTGCGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z3527 |
11 |
TTCTGGTGTTTTCCAGCGGA |
20 |
GGCAGTTCGTCACCTCAAAACA |
22 |
286 |
|
220 |
|
|
|
Z3714 |
11 |
TGGCTGTGTTCATATGGTGTCC |
22 |
CACAACGCCATCTGACCCAG |
20 |
NA |
NA |
NA |
NA |
|
G40343 |
Z3952 |
11 |
CAGTTTCACAGCCGCATG |
18 |
AGCAGCAGGTCAAACACTCA |
20 |
NA |
NA |
NA |
NA |
|
G41473 |
Z4190 |
11 |
CCATGGAAAAGGCTGGTTATGG |
22 |
TCCACGTTTCCAGGTGAAAATG |
22 |
NA |
NA |
NA |
NA |
|
G41484 |
Z4207 |
11 |
TGCTCCCATCATGGCAAAGA |
20 |
GGCTGGCTAATAATTCAGGGGA |
22 |
NA |
NA |
NA |
NA |
|
G41488 |
Z4221 |
11 |
GTGTTCCTCTGGGAAACATCA |
21 |
ACAGCAATGGCAAGTTTCTG |
20 |
218 |
|
226 |
|
|
G40355 |
Z4353 |
11 |
CGCATACATTTGTGCATGGTTC |
22 |
TGGGGCCTCCTTCAAAATCA |
20 |
NA |
NA |
NA |
NA |
|
G41509 |
Z6272 |
11 |
GGATGGACAGTGCTAGTGAATG |
22 |
CATTTGAGGACACTGACCAGA |
21 |
115 |
135 |
145 |
|
|
G40412 |
Z6285 |
11 |
TGATAGAATTTCCCATTGACCC |
22 |
GACTGAGTGTGGACACCCCT |
20 |
349 |
|
319 |
|
|
G40414 |
Z6682 |
11 |
TCCAGAAGTCAGATGGAGAAGA |
22 |
CCTGCTCCTCTCACTAACCG |
20 |
166 |
|
122 |
172 |
|
G40460 |
Z6909 |
11 |
ATCAATGCCAACTATGTGGATG |
22 |
TGGGTTTATTATAGCCCTGTGG |
22 |
? |
|
? |
? |
|
G41624 |
Z6971 |
11 |
GACCCTCAACAGCCAATTTG |
20 |
TGGGAGTAAATGTTGCCCTG |
20 |
? |
? |
? |
|
|
G40486 |
Z7022 |
11 |
CTAAACATTCCCCTGCGGTA |
20 |
CACGCAACACTGACGACTCT |
20 |
? |
|
? |
|
|
G41643 |
Z7156 |
11 |
GCAGTCAGAAATCCCAACAG |
20 |
CTTAACTGCAGACCAGTGCG |
20 |
284 |
|
292 |
306 |
|
G41141 |
Z7247 |
11 |
TTTTACAGCAATGCCTCGC |
19 |
CAGCGGCCACACCCTTAC |
18 |
110 |
|
150 |
|
|
G40527 |
Z7517 |
11 |
TTTTCCATCGCTTCGCTAGT |
20 |
TGCTCTACAACAGGGCTGTG |
20 |
214 |
|
196 |
|
|
G40565 |
Z7657 |
11 |
CTACAAATCCTGTCATGCACC |
21 |
GATAAAATCTGCAAGGACACCA |
22 |
250 |
|
226 |
|
|
G41629 |
Z7907 |
11 |
AAACGGATCTGCAAGCAACT |
20 |
TGTGTCAATTGTGGAATGTGC |
21 |
197 |
|
199 |
|
|
G40608 |
Z8032 |
11 |
TGTCAAACGTCAGAAACAAAGG |
22 |
TGGCCTCTTTCATCAGCAG |
19 |
127 |
|
145 |
|
|
G41161 |
Z8180 |
11 |
AAGCAGACGGAGCAGGACT |
19 |
TGAAGATTCTGTCAGTGCGC |
20 |
162 |
|
166 |
|
|
G41162 |
Z8214 |
11 |
TGCCGGAGTTGTTGTAAACA |
20 |
AAACTGGCTCTGATGGGATG |
20 |
150 |
|
158 |
258 |
|
G41195 |
Z8449 |
11 |
GCAGATCAGTGCTCATTCACA |
21 |
TCCATGAATCACCTGGACTG |
20 |
304 |
|
262 |
276 |
|
G40648 |
Z8816 |
11 |
AACGTGCACTTACAGCGATG |
20 |
TCACACACCCCTGATCTGAA |
20 |
211 |
|
|
233 |
|
G40695 |
Z9192 |
11 |
GTGTACCTAATAAAGTGGCCGC |
22 |
TGCACGTGTCTAATCATCATC |
21 |
105 |
|
101 |
|
|
G41175 |
Z9239 |
11 |
CATACACCCGAGCAATCATG |
20 |
CAGCTCCGTGACATGACG |
18 |
142 |
|
136 |
|
|
G40754 |
Z9567 |
11 |
CTGACCTTTCCTCTGTTCGTG |
21 |
TTCAGCTAAAGCACACCCAA |
20 |
? |
|
? |
|
|
G41185 |
Z9873 |
11 |
CCGATAACTGATCGATAACGG |
21 |
ATGTATAAGTGTCTTGCTGCCC |
22 |
214 |
|
200 |
|
|
G40856 |
Z9933 |
11 |
AATGTGCTCCGTATGCATTG |
20 |
GGCCTCTGATCAGCTCTTCA |
20 |
? |
|
? |
|
|
G40866 |
Z10142 |
11 |
TCTGTCTAGCACGTCATGGC |
20 |
CCACAGCTGTAAACCGGAAT |
20 |
183 |
185 |
179 |
|
|
G39753 |
Z10215 |
11 |
ATATCCCGTCCTGCTCAGTG |
20 |
TCAGATGTGCACAACTGCAA |
20 |
108 |
|
116 |
128 |
|
G39764 |
Z10464 |
11 |
GGCCTAGTGCACAGAGAGC |
19 |
TGGTTTCCTGAACAACCACA |
20 |
184 |
|
178 |
|
|
G39798 |
Z10590 |
11 |
GATGATAAGCATTAGGGATGGC |
22 |
TGAATTGGATGAACTAAATTGGC |
23 |
296 |
|
312 |
|
|
G39812 |
Z10680 |
11 |
AGTCAGGTGAAGCTGAGCGT |
20 |
GACTCAGTAGGTTTCGGGACA |
21 |
218 |
234 |
238 |
|
|
G39819 |
Z10727 |
11 |
TGCAGGAAACTGCTTTTTCA |
20 |
TAATCCTGCTTGTGTTGGCA |
20 |
218 |
236 |
204 |
|
|
G39821 |
Z10919 |
11 |
CAGGACTCGCGAGAGTTGTT |
20 |
GCAATGAGTCACAGAGCGAA |
20 |
83 |
|
89 |
97 |
|
G39843 |
Z11067 |
11 |
TTGCTGTCTGACTCCAGTGG |
20 |
GGCAACAAGTGACCCTCATT |
20 |
114 |
|
240 |
|
|
G39865 |
Z11129 |
11 |
CTTACAAAAGGCCCTTTCCC |
20 |
AGCAGGAGAGCGATCCTTC |
19 |
NA |
NA |
NA |
NA |
|
G39007 |
Z11160 |
11 |
TGTTTTCCTGACCTGAATACTTGA |
24 |
TAGCTCCTCAGAACCGCAG |
19 |
321 |
|
391 |
|
|
G39877 |
Z11504 |
11 |
GGCCTAGCAGGGTTTCCTAC |
20 |
TGCAGAGTGATCTGGTGGAG |
20 |
253 |
|
235 |
? |
|
G41719 |
Z11620 |
11 |
GCATTCAGCAAATCCAACTG |
20 |
TTCCCATCATCAGTTGGACA |
20 |
175 |
|
187 |
|
|
G39937 |
Z11809 |
11 |
AGCTGTGATATGCATCAGCG |
20 |
AACAGCCCTGATCTGGTTTG |
20 |
136 |
|
194 |
|
|
G39960 |
Z11865 |
11 |
CTGATTCTCACGCCTGAACA |
20 |
TCAATGCTCCAGCTCTCATG |
20 |
109 |
|
77 |
87 |
|
G39967 |
Z13244 |
11 |
CCTGTAACATGTCTCCAAAACA |
22 |
GCGTCACCAAAGAGTCCTATG |
21 |
197 |
|
201 |
|
|
G39997 |
Z13320 |
11 |
TAAGAGCGTAACGTGGAGCA |
20 |
CACTCTGCTGACTCTGCTAGAAA |
23 |
114 |
|
111 |
|
|
G40008 |
Z13395 |
11 |
ACCAACCCTGAGGGAGTTTT |
20 |
CCTTGCTACCGCTATGAATG |
20 |
149 |
|
119 |
|
|
G41760 |
Z13411 |
11 |
CCATCCGTCTTTCTGCTCTC |
20 |
CCAGCTCTGTGTGTTTGGAA |
20 |
205 |
|
225 |
235 |
|
G41761 |
Z13666 |
11 |
TGTATCGCAACATTACCCGA |
20 |
CTGTGGGGCAATCCATAAAT |
20 |
275 |
|
303 |
|
|
G40055 |
Z13935 |
11 |
CAGGCACAGGCTTTCATACA |
20 |
GTCCTGCATGGAGGATCAAT |
20 |
? |
? |
? |
|
|
G40090 |
Z20004 |
11 |
GATGCTCCGTGCCTAGAAAG |
20 |
TATGCTTGTTTTGCTGTCGG |
20 |
286 |
|
290 |
|
|
G40146 |
Z20709 |
11 |
TTTGTGCTGCATTTAACCCA |
20 |
AAACAGAAGTCAGGAGACTTGCTT |
24 |
162 |
|
138 |
|
|
G40196 |
Z21025 |
11 |
TCTCCACCAAAATAGCCAGC |
20 |
GTTCTTGCCCCGTTATCCTT |
20 |
147 |
|
129 |
|
|
G40217 |
Z21385 |
11 |
GGGTCAGCAGGACACCTG |
18 |
CCAAACCCAAAGTGAGAGGA |
20 |
186 |
|
178 |
|
|
G40245 |
Z21428 |
11 |
AGTGTCACCCAAACGTGACA |
20 |
CAGTGTCCAGCGCTACAAAC |
20 |
93 |
|
95 |
|
|
G40249 |
Z21618 |
11 |
AGAGGAGGAGCGTGACCTTC |
20 |
TGAGCTCAGCGTTTCTCTGA |
20 |
190 |
|
192 |
|
|
G40263 |
Z22038 |
11 |
AGCAAGTGTTTTGTGCCATT |
20 |
CTGCGATATGGAACATCCCT |
20 |
|
|
|
|
|
G40284 |
Z22084 |
11 |
ATGAAGTCCTGGCGTGTTTC |
20 |
TTTCCTGAGCTCTCCCAAAA |
20 |
280 |
|
262 |
296 |
|
G41767 |
Z22206 |
11 |
ATCAAGCGTCTGAGGGTGAC |
20 |
TCTGCTTTATTCGGTAGCCC |
20 |
154 |
|
176 |
|
|
G40299 |
Z22355 |
11 |
ATGCTCTTCAGATTTGCCGT |
20 |
CCCCAGCACAAACACAGATA |
20 |
154 |
|
168 |
|
|
G40314 |
Z22552 |
11 |
CTCCGGCTGAACTTTCACTC |
20 |
AGTGTGTCCATCAGCATCCA |
20 |
NA |
NA |
NA |
NA |
|
G39490 |
Z22766 |
11 |
ATTTATTTATCGAGGCCGGG |
20 |
TCCTATTTTAATCCACTGGCC |
21 |
NA |
NA |
NA |
NA |
|
G39517 |
Legend
Table generated Wed Oct 7 16:28:07 1998
