Linkage Group 06 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z6523A |
6 |
AGGACGTCACCAATGTTCTC |
20 |
CTTGATAAAGGTGACCCGTACC |
22 |
357 |
|
341 |
379 |
|
|
Z265 |
6 |
CCTTCCCTCAAAGAGCGAG |
19 |
TGGAGTCGCTCATTAGCAAA |
20 |
NA |
NA |
NA |
NA |
|
|
Z740 |
6 |
AAACTTTGCTGCTCTTCCTCC |
21 |
CTCTGTCAGGTCCTGTGATCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z793 |
6 |
TGGTGAAATTTTGGACAGCA |
20 |
CAAGGACCAAATGGAAGGAA |
20 |
207 |
209 |
199 |
|
|
|
Z880 |
6 |
TGATCTGAGACGTCTGCCG |
19 |
GCGCTCTGACAGTGCTTACA |
20 |
150 |
160 |
170 |
|
|
|
Z1050 |
6 |
ACTCTGAGTCTGCAGTCCCG |
20 |
AACTGCTGCAGTTAATTATTGC |
22 |
119 |
145 |
129 |
167 |
|
|
Z1138 |
6 |
GAACGACGGCACTCTATCCG |
20 |
TTGCAGCCTTAGTGTAAACGAA |
22 |
NA |
NA |
NA |
NA |
|
|
Z1265 |
6 |
ATATGTGCTGCTCATGATGAGT |
22 |
AACAGACGAAGGGTGAAGGA |
20 |
102 |
140 |
114 |
|
|
|
Z1461 |
6 |
CAGTACAGTGTCTGGAACACTGC |
23 |
TGTCACGTCAGGTTTATATGGG |
22 |
NA |
NA |
NA |
NA |
|
|
Z1680 |
6 |
AACGCATTTCCTGCCTCGTC |
20 |
CAGCTCTGGAGATCTGAGGGTT |
22 |
NA |
NA |
NA |
NA |
|
|
Z1701 |
6 |
AAGGATCAGCTGTTCTAACCCA |
22 |
AGGCAGGTGTGAAAGCACCC |
20 |
NA |
NA |
NA |
NA |
|
|
Z3011 |
6 |
GCTGTGAGTGACTGCTGGGC |
20 |
CCCTTACACCGAAAGTCAATGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z3368 |
6 |
ACCCGCCTCCTGATGAACTG |
20 |
CAGCTGTGGAACAGCGCATT |
20 |
NA |
NA |
NA |
NA |
|
|
Z3581 |
6 |
TTCTGCTGTGGCAACCCCTT |
20 |
AGCTCATCCCTTTGGCAGATT |
21 |
212 |
|
208 |
|
|
|
Z4297 |
6 |
AGACTCACCATGGCTTGCTCG |
21 |
TGTGCAGAGGAACAGCCCTG |
20 |
NA |
NA |
NA |
NA |
|
|
Z4339 |
6 |
TCTCTCCGTGAGTTTCCGCC |
20 |
CATCTCCATTGTTTCTGCTGGG |
22 |
NA |
NA |
NA |
NA |
|
|
Z4761 |
6 |
GGTGAATAGGGCTAAATTGTCA |
22 |
GCCAAAAATACATTTTGGATTT |
22 |
NA |
NA |
NA |
NA |
|
|
Z4950 |
6 |
AAACGGATTCACAGACGAGCG |
21 |
TTCATGAATGAGGCCCACTTTG |
22 |
178 |
186 |
190 |
208 |
|
|
Z5294 |
6 |
AGGGCGGCGAAATTGAAATT |
20 |
AGCTCTAACCCCCTCCAAGCA |
21 |
343 |
363 |
351 |
369 |
|
|
Z6182 |
6 |
CATCAGCCAAACTTTAGACGG |
21 |
ACAGCAGAGACGCCACATC |
19 |
157 |
187 |
207 |
|
|
|
Z6330 |
6 |
ATCACACGCCTGCAGAGTC |
19 |
CAGCATTCAGCATGTGGC |
18 |
97 |
107 |
93 |
|
|
|
Z6446 |
6 |
GCTTCACTTCACTCGCACC |
19 |
CATCACTGCTGAGACCGGTA |
20 |
171 |
185 |
175 |
|
|
|
Z6601 |
6 |
TGGGGAGAGAAATCCCTCTT |
20 |
AAGTTTCAGGACATCAAATGGG |
22 |
152 |
|
144 |
146 |
|
|
Z6624 |
6 |
TTCCCAGAAAACAGCCTCAG |
20 |
CTGATCAACATCAAACGCAC |
20 |
NA |
NA |
NA |
NA |
|
|
Z6645 |
6 |
AATTGTCCAGTGAGACCGCA |
20 |
AAGGGAGCCACAATTACGG |
19 |
238 |
240 |
250 |
|
|
|
Z6767 |
6 |
AGGCCGGTAGCAATAATCAA |
20 |
GAATGCCCTTCCGTATTGG |
19 |
NA |
NA |
NA |
NA |
|
|
Z6837 |
6 |
TGAGCACATACCACAGCCTG |
20 |
GGCTGGGTGTGTCTTCCTAA |
20 |
146 |
164 |
144 |
|
|
|
Z6907 |
6 |
TTTCCCAGAAGAGTGTGATGC |
21 |
AAGGCCGACAGACAGAGAAA |
20 |
? |
|
? |
? |
|
|
Z7024 |
6 |
ATGGAGATGCTTCAACAGGG |
20 |
CACACACATAAGGTGTTTGCA |
21 |
198 |
240 |
164 |
172 |
|
|
Z7248 |
6 |
GGTGACATGCCACTGATGTC |
20 |
GGAATTTGTAACGTGTGGTGG |
21 |
227 |
357 |
233 |
247 |
|
|
Z7303 |
6 |
GAACAGCGAGAGTTTGCTCC |
20 |
TACAAGGACCCGTTTGCTCT |
20 |
249 |
299 |
305 |
|
|
|
Z7622 |
6 |
AGCACAAACACATCCAGCAC |
20 |
CTGGTCTGAGCATTTGGTGA |
20 |
209 |
211 |
203 |
|
|
|
Z7624 |
6 |
GGTAGCGTGAAACTATCCTCC |
21 |
GAGGACTGGCTTTATGAGCG |
20 |
223 |
|
195 |
199 |
|
|
Z7647 |
6 |
GACAACATCCCAAACCGAAC |
20 |
TCCTTCAGCGGTCTGTTTCT |
20 |
251 |
|
291 |
241 |
|
|
Z7666 |
6 |
ACAACGCAGCATCATCTCTG |
20 |
CAGTCATCCTGGACTGCTGA |
20 |
193 |
|
169 |
|
|
|
Z8229 |
6 |
GGTTGTGGGCAGTAGGTGAT |
20 |
ACTAACGGCCATTGCAAAAC |
20 |
111 |
113 |
121 |
|
|
|
Z8245 |
6 |
TGCAAACTGCAGCAGTGAG |
19 |
CTGGAACTAATGTGCTCCTCG |
21 |
134 |
|
136 |
|
|
|
Z8342 |
6 |
TGGAGAGAAACGCCCCTT |
18 |
TAACTTGCTGGCAACAGTGC |
20 |
167 |
183 |
201 |
215 |
|
|
Z8367 |
6 |
TCCTGAGAGAGTCTGGAGTTCC |
22 |
GCTCGTGGCCTTCTCTACAC |
20 |
130 |
138 |
124 |
|
|
|
Z8447 |
6 |
GTGGATTCACAACAAACCCC |
20 |
TCATTCACATCAGCACTGCA |
20 |
133 |
173 |
149 |
|
|
|
Z8532 |
6 |
CGGCAGTTTATATGCAGCCT |
20 |
CCTGAGACACAAGACAGCCA |
20 |
104 |
|
108 |
110 |
|
|
Z8709 |
6 |
GGTTCTCTGTGAGGAGGCTG |
20 |
GTTGTGCTGTTTGACGTGCT |
20 |
230 |
|
228 |
232 |
|
|
Z9142 |
6 |
TACAATGTGTCCTGCATTCTCA |
22 |
TTTCCTGACTGACACACTCCC |
21 |
132 |
|
96 |
98 |
|
|
Z9230 |
6 |
AGCTTTCAAGAAGAATGGATGC |
22 |
GTCCTCTTCATCATGCTAGCG |
21 |
220 |
|
208 |
|
|
|
Z9254 |
6 |
TGATGTCAGCGCACCTTTAA |
20 |
CTCTTTATGACGGCTGAATGC |
21 |
301 |
|
341 |
|
|
|
Z9417 |
6 |
TCCCCCTCAGATGTGATTTC |
20 |
CCCTACCTTGACCACCTCTG |
20 |
339 |
|
299 |
|
|
|
Z9652 |
6 |
TTGTGTCAAGCTGGTGAAGTG |
21 |
TGTTTGCAGCACTATCAGCC |
20 |
244 |
256 |
226 |
|
|
|
Z9679 |
6 |
TGTGTTTTACAGACGGAGCG |
20 |
ACGAGGGCGAGTGAATAATG |
20 |
279 |
329 |
329 |
|
|
|
Z9738 |
6 |
CAGATCCGGAGCTTCAACTC |
20 |
CAGCCAGCAGTGTAAGCTGA |
20 |
188 |
|
182 |
184 |
|
|
Z9870 |
6 |
CTCCATAGCAACAGGGCATT |
20 |
AGCTCTCACTTCTCAGCTCATT |
22 |
144 |
|
154 |
180 |
|
|
Z10141 |
6 |
TCATGACTTTGCTGGTTTGC |
20 |
TCTCTCCCACCTCCCCTAAT |
20 |
158 |
|
124 |
150 |
|
|
Z10183 |
6 |
CCGACATGGACAGACAATTG |
20 |
TGTGTCCTGTTGGGGATACA |
20 |
209 |
223 |
215 |
229 |
|
|
Z10339 |
6 |
GCTCGAAAGTGCTCATCTCC |
20 |
GAGGTCTGCCATCTCACACA |
20 |
186 |
|
216 |
|
|
|
Z10396 |
6 |
GCAGAGGAGGCGTCTCATTA |
20 |
GTCACGAGGGTCTCGATGAT |
20 |
? |
? |
? |
|
|
|
Z10479 |
6 |
CTGTGGCTGTAATTGCTGGA |
20 |
TCTAATCCGCTGTCAAACCC |
20 |
100 |
|
96 |
|
|
|
Z10581 |
6 |
TCCACATCAGATGAGGAGTAACA |
23 |
ATGATCTCCTCGTCCTCGTG |
20 |
182 |
184 |
188 |
|
|
|
Z10615 |
6 |
TGCACAGAAAAATATAACATGAACA |
25 |
TGCTGTATTTCCATCAGTCTGAC |
23 |
92 |
94 |
98 |
|
|
|
Z10657 |
6 |
CCAGAACAGTGATGAAGCGA |
20 |
GTCCCTGAGCTTCAGCAGTC |
20 |
234 |
254 |
262 |
|
|
|
Z10914 |
6 |
GCTGTTTACTTCGGCAGCTT |
20 |
AGAGACGGCGTCTGTGTTCT |
20 |
267 |
|
241 |
243 |
|
|
Z11276 |
6 |
CAGCTCATTGTTCATCCGAA |
20 |
ATTGCAAATGTGCCATCTGA |
20 |
207 |
269 |
213 |
|
|
|
Z11310 |
6 |
CTGCACAACACGGACGATAC |
20 |
ATAATGGCCTGTTTGCTTGC |
20 |
? |
|
? |
? |
|
|
Z11466 |
6 |
TCTTCCGGCTGAGTTTGAGT |
20 |
GCATGGGGTGAATTAAATGG |
20 |
176 |
|
173 |
183 |
|
|
Z11478 |
6 |
CCCAGATCACCATTCATGTG |
20 |
GCCTTTGGAAAATCCAGACA |
20 |
116 |
184 |
132 |
|
|
|
Z11919 |
6 |
CAAATATGAACCCACCCCAC |
20 |
GCTTCACACACCTGGAACAA |
20 |
209 |
|
223 |
257 |
|
|
Z11988 |
6 |
AATGTGTGAGGATGCCTTCC |
20 |
GCAGATCAAAGCATGAAGCA |
20 |
149 |
|
217 |
|
|
|
Z13275 |
6 |
CATGCTGTCCCAACACAAAC |
20 |
CACCTGTGGATGTTCAGGTG |
20 |
140 |
142 |
134 |
|
|
|
Z13328 |
6 |
AAGGCAAGACCTCATTGTGC |
20 |
GCAGGTACGTCTCCTTCAGG |
20 |
238 |
242 |
312 |
|
|
|
Z13538 |
6 |
TGCTGGAAATGGATGAATGA |
20 |
GTACCTTCTGCAGAGCTCCG |
20 |
196 |
198 |
200 |
206 |
|
|
Z13556 |
6 |
CCTGAAATCATCAGCGACCT |
20 |
CGCATAGAGGACCTACGAGC |
20 |
210 |
|
200 |
224 |
|
|
Z13614 |
6 |
ACCTCGACATGGAGACAACC |
20 |
ACAGACGAGGCACACATCAG |
20 |
289 |
317 |
245 |
269 |
|
|
Z13952 |
6 |
CTAAACACTCCCTGAGCGCT |
20 |
ACCTTCATCTCTGCTCCCAA |
20 |
? |
? |
? |
|
|
|
Z14038 |
6 |
CTACTGCATACCCGACTGCA |
20 |
GAATGTGATTGGGATTTCCC |
20 |
108 |
130 |
220 |
|
|
|
Z14050 |
6 |
AGGACCAGCTGTCCTTCTCA |
20 |
TCAGCCGGAGGAGTTACATC |
20 |
? |
|
? |
? |
|
|
Z14074 |
6 |
GTTTTGCCTCTCGCTGACTC |
20 |
ATATGCTGCCCCTGTTTGTC |
20 |
? |
|
? |
|
|
|
Z14110 |
6 |
TTCATAGAGTGCTGGCATCG |
20 |
CAACTCTGCTTTCTGCCACA |
20 |
? |
? |
? |
|
|
|
Z14158 |
6 |
GCTTTCTCAGGCTGTATCGG |
20 |
CACAATCCCACCAGACCTCT |
20 |
168 |
|
192 |
|
|
|
Z15448 |
6 |
ATGTTAGAAAACAGGCGCGT |
20 |
GCCATGCATAACTTTAGCACA |
21 |
144 |
|
184 |
|
|
|
Z15493 |
6 |
TGCTCTGGTGTGATGTTTTACC |
22 |
CCAACACACTTTCGTCCAGA |
20 |
184 |
186 |
180 |
|
|
|
Z17212 |
6 |
TTTGAAAAGTCTGTCCATCACG |
22 |
GGACAAGCAACAGGTCAGGT |
20 |
118 |
|
140 |
154 |
|
|
Z17248 |
6 |
CAGAACCTCAGGCTTTACCG |
20 |
TGGATAGAGTCCATAAGCTGGA |
22 |
125 |
|
113 |
257 |
|
|
Z20207 |
6 |
CGCACATACATGCATCCAAT |
20 |
GAAACAGCCTTGGAGGAGTG |
20 |
280 |
|
178 |
|
|
|
Z20381 |
6 |
TGAAGAATGCACAAAGCCTG |
20 |
TCCAACATCGACATACCAGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z20411 |
6 |
CAATGCCCTAGCAACCATTT |
20 |
CCCCTGATTCTGGAGTGGTA |
20 |
138 |
|
98 |
118 |
|
|
Z20932 |
6 |
TGTGGAAATGAGGAAAAGGC |
20 |
CTGGTGTCAGACAGAGCCTG |
20 |
240 |
|
272 |
262 |
|
|
Z21489 |
6 |
TGCAGATGTGAAAGGAGACG |
20 |
TGCCTACTGGTTAACAGTCTGCT |
23 |
160 |
172 |
156 |
|
|
|
Z21901 |
6 |
TGGAGTCTGAGACGGCTCTT |
20 |
GGGAAAGACAGTGAAGCTGG |
20 |
158 |
160 |
164 |
|
|
|
Z22253 |
6 |
GCCACCACTCGGTCAAAC |
18 |
AGCTGTTTTTCCAGGGGTTT |
20 |
290 |
294 |
276 |
|
|
|
Z22345 |
6 |
CCTCTGACTGACCACTGCTG |
20 |
GCAGCTCACTGTTTCCATGA |
20 |
235 |
247 |
237 |
241 |
|
|
Z22444 |
6 |
CGAGCAATAACTGCACTGGA |
20 |
CTCTGGTGTGTCCATCCATG |
20 |
150 |
158 |
148 |
|
|
|
Z22467 |
6 |
ATTGATGGACCGTTTGGTTG |
20 |
TTCAATTGTGCTCACTGCAG |
20 |
151 |
|
87 |
105 |
|
|
Z22712 |
6 |
TCAAACGCATCAGACTGGTC |
20 |
ACAGACGATCAGATCAGGGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z22745 |
6 |
TGCTCAAACCAGCAACAGAC |
20 |
CCCTCTGTTGACTAGTCCCC |
20 |
NA |
NA |
NA |
NA |
|
|
GOF2 |
6 |
GACAGCTCCATTAACTAAACCTTT |
24 |
GTCAGCAAGCTTTCTGTCACA |
21 |
187* |
NA |
NA |
NA |
"Goff, et al., |
|
GOF20 |
6 |
TGCTGACCGCTGAAACTG |
18 |
TGAACGGCCACATAAATAAGC |
21 |
133* |
NA |
NA |
NA |
"Goff, et al., |
|
GOF26 |
6 |
CTGTGTGAGATTGTGTGTTTGTC |
23 |
ACAACACGTTGCATTTGTCG |
20 |
241* |
NA |
NA |
NA |
"Goff, et al., |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
