Linkage Group 18 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z3763A |
18 |
CCAATTAACGGAAGTGAACCGC |
22 |
GCACTGGATCAGTCCCGCTT |
20 |
266 |
|
260 |
|
|
|
Z737 |
18 |
AACACTTGATATTGCATGACGG |
22 |
ATGTTGGTTAGCATGCACCA |
20 |
108 |
|
98 |
|
|
|
Z928 |
18 |
CCAGAGTACTCGATCTGTCTTGA |
23 |
ACACCTTCGGCAGTTTTCAC |
20 |
94 |
|
106 |
|
|
|
Z1136 |
18 |
TCATGTGAAGCCTGCAGTTC |
20 |
AGCTTCAGCTGTTTAAAGGTGC |
22 |
105 |
119 |
111 |
115 |
|
|
Z1144 |
18 |
CTCCTCTCCGGGATACACAC |
20 |
ACCACGAGTCTGAGTGCTGA |
20 |
253 |
|
263 |
|
|
|
Z1201 |
18 |
GGAGCTGTGGAGCACAGAAA |
20 |
CGTGTACTACCCCGGCAC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1261 |
18 |
AGCAGGGTGGAGAGTCTGAA |
20 |
CGGTCTCAGAGGAGATCTGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z1417 |
18 |
GCGGAGACACAGCTCTGAACG |
21 |
TCCAGGATGCAGGCGTTGTA |
20 |
NA |
NA |
NA |
NA |
|
|
Z1654 |
18 |
CGTCCAGCACTGCCGACATC |
20 |
CAGCCGACTGAAGGTGTAGAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1795 |
18 |
TGGGGTCCAGCCTTTGCTGA |
20 |
GCTGCACGCCACCGCCTACT |
20 |
NA |
NA |
NA |
NA |
|
|
Z3232 |
18 |
TCACCCTTTGGCCATGTTGT |
20 |
AGGGGCCCTTAAGTGGACTCC |
21 |
221 |
239 |
193 |
|
Use at your |
|
Z3558 |
18 |
GTTATTGGCACCAGCCAGGC |
20 |
TGATAGTCCTGTCGCCGCAA |
20 |
161 |
243 |
157 |
|
|
|
Z3838 |
18 |
CGTAAATGCAGAAAATTGGGCT |
22 |
ATGCTTGAGCCCATGAATGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z3853 |
18 |
TCCCTCACAGCTACTCAGCAAG |
22 |
GAGGCCAAGAAAGAAATCTCGA |
22 |
NA |
NA |
NA |
NA |
|
|
Z3892 |
18 |
CGCGCCAAATCATCTTTCCT |
20 |
TTCACACACGCTCACGTCCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z4263 |
18 |
AAGCTTCACGCCAAAGACTGTG |
22 |
ACAAGCACACCATTGCTGCA |
20 |
324 |
|
318 |
320 |
|
|
Z4378 |
18 |
AACTGTATGATCGCCTTAAC |
20 |
ACTTCCTGTCTAGTGTCTGATTAT |
24 |
NA |
NA |
NA |
NA |
|
|
Z4717 |
18 |
AAGGTGAAGTGTGTGGCCTTCA |
22 |
CGTGAGGTTTGCTGTCACGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z5231 |
18 |
AAAGTTGGGTTCATGTTGTGCG |
22 |
ACGGATCACATCAAACCTGTGC |
22 |
144 |
146 |
148 |
150 |
|
|
Z5321 |
18 |
TCCTCCACTGAGGTCACTTCCA |
22 |
TCATAAATTAAACCCCGCCCTC |
22 |
NA |
NA |
NA |
NA |
|
|
Z5442 |
18 |
AACTGACTGTAGCGCATGGGG |
21 |
CAGAGGTCGCCACAGTGGAA |
20 |
NA |
NA |
NA |
NA |
|
|
Z5479 |
18 |
AGCCGTATGACAGCTTTCCAGG |
22 |
CTGTCCACAATGAAGCAGCACC |
22 |
NA |
NA |
NA |
NA |
|
|
Z6098 |
18 |
ACCTGATGGCTTTGTAACCG |
20 |
CAGCACCTCATCAGGCCT |
18 |
118 |
|
104 |
|
|
|
Z6572 |
18 |
AGGGCTCAGTGCTGTTCG |
18 |
CTTGCCGACGCTCTTGAT |
18 |
267 |
|
303 |
325 |
|
|
Z6709 |
18 |
GCTCAGCCGAGGTTAATCTG |
20 |
CCGGATCAAACTTGAGGAAA |
20 |
122 |
124 |
116 |
118 |
|
|
Z6710 |
18 |
CATGTAGGGAAAGGAAGCCA |
20 |
CCTCTGCTCAGACTGCAGTG |
20 |
122 |
? |
100 |
114 |
|
|
Z7142 |
18 |
TGGGAGGAGAGGCACAAATA |
20 |
TAGATGCGTGCAAGAGTTGC |
20 |
281 |
233 |
345 |
n |
|
|
Z7256 |
18 |
CTTCCGAGAGTCCACAAAGG |
20 |
TGCTCTGAAATGGAAATTTTCA |
22 |
367 |
|
411 |
|
|
|
Z7330 |
18 |
GAAACCCGTGAAGGTTTGAA |
20 |
CTTGAACAGAGCAGAGTTCAGA |
22 |
153 |
159 |
157 |
181 |
|
|
Z7417 |
18 |
TCCGTGATTTCCTCCTGATC |
20 |
TCAGATTTAGAGCACGCGC |
19 |
259 |
|
199 |
|
|
|
Z7426 |
18 |
CAATCAGCCTTACACGCTCA |
20 |
TGCTGGAAGTGTGTGATCTTC |
21 |
136 |
178 |
142 |
152 |
|
|
Z7618 |
18 |
AAGCATTTGTGGTTTAAATGCA |
22 |
GCTGCCCATTCTTCAAACAT |
20 |
141 |
|
127 |
129 |
|
|
Z7654 |
18 |
CCAATCACAGAGGCAAACAA |
20 |
TCATGCTGAAAGGTGTTGGA |
20 |
151 |
|
257 |
315 |
|
|
Z7865 |
18 |
TGTCTGTTAGGACTCTGGAGGA |
22 |
CTCACACCATGCTGCACAAT |
20 |
233 |
271 |
229 |
n |
|
|
Z7961 |
18 |
TGCTCTTCTGTATTCTGCCG |
20 |
CGGGGTATCTGCAGACTGAT |
20 |
177 |
|
171 |
181 |
|
|
Z8343 |
18 |
TGCAAATCAGATTCTAGAACCA |
22 |
ATCATTAGGACACGCAAGGG |
20 |
194 |
216 |
200 |
|
|
|
Z8468 |
18 |
TCGTTATGAACCCCTAAAGCA |
21 |
CACACAGGAGACCGGGTTAT |
20 |
225 |
|
209 |
211 |
|
|
Z8475 |
18 |
CATCTGTTAGTGTGTGCGTGC |
21 |
TTGATTTGGCTAGAGATCCTCTG |
23 |
|
|
|
|
|
|
Z8488 |
18 |
TCACTCATGCGTTTACCCAA |
20 |
CCCCCACGGTGTATTGATTA |
20 |
130 |
|
118 |
120 |
|
|
Z8525 |
18 |
AAAGCAGAGCAAACCTGAGTG |
21 |
CTGAAAATGGGAAACGAGGA |
20 |
196 |
|
204 |
208 |
|
|
Z8788 |
18 |
GTTCTTGTCCCGGCTGAAC |
19 |
TGCAACCCATCACTTGAAAA |
20 |
206 |
210 |
216 |
220 |
|
|
Z8823 |
18 |
CTGCAGGGAGAGGCATTG |
18 |
TCTAATCAGCGCCCTTCTTG |
20 |
275 |
|
265 |
|
|
|
Z8840 |
18 |
TGGATCCTCATCACAGGACA |
20 |
GTGTGCATGCTTGGAAAAGA |
20 |
259 |
299 |
277 |
n |
|
|
Z9024 |
18 |
CCACTGCAGGGTACTGGTG |
19 |
AAAAGCCACACACTTTTGGG |
20 |
221 |
|
237 |
239 |
|
|
Z9094 |
18 |
CAACCCTTGACCCTCGTG |
18 |
TGACCAGAGTTTCTTGGCG |
19 |
267 |
|
261 |
|
|
|
Z9154 |
18 |
CACGGGCTCTCTAATTGGAA |
20 |
CCATTAGCAAGTCGTGACGA |
20 |
157 |
179 |
161 |
163 |
|
|
Z9194 |
18 |
GAGTGCTGTCCACCCACC |
18 |
AAATAAGCCGTGTGTCTGCC |
20 |
117 |
|
113 |
|
|
|
Z9231 |
18 |
GAAATTACAGCTCCATAACGGC |
22 |
TCTGCTTCATTCCCTGCTG |
19 |
228 |
|
226 |
252 |
|
|
Z9404 |
18 |
CCACTGATGGACAGGGTAAC |
20 |
GTGATCTTTGGCGTCTTCG |
19 |
267 |
|
179 |
|
|
|
Z9484 |
18 |
GCCTCGGGTGAAAGACATAA |
20 |
TACTTGTGGAGACATTTGGCC |
21 |
123 |
125 |
157 |
161 |
|
|
Z9801 |
18 |
ATCAGTGTGTCCCGCTTCAT |
20 |
CGCCGGAAACTCTTATCATC |
20 |
? |
|
? |
? |
|
|
Z9941 |
18 |
GCACACTCGCACATTAACCA |
20 |
TTGCACAGAGCACATTCCTC |
20 |
? |
|
? |
|
|
|
Z10008 |
18 |
AAGCCAAACTGATGGGTACG |
20 |
GGCTCCTTTGATGTCCCATA |
20 |
149 |
259 |
183 |
|
|
|
Z10264 |
18 |
GTTCAGACACCGACCGTTCT |
20 |
ATGTTGCCATTTTCACACCA |
20 |
176 |
|
174 |
|
|
|
Z10312 |
18 |
CGCGTGTGACTGATGGAGT |
19 |
ATGTGTAGGGCGTTACCGAC |
20 |
102 |
|
98 |
170 |
|
|
Z10691 |
18 |
GTGAGGGGTTCAAACCTCAA |
20 |
TCAATGGCTCAGACCCCTAC |
20 |
118 |
120 |
130 |
|
|
|
Z10729 |
18 |
AGCGTGTAGGAAGCTTTCGA |
20 |
TGTGCTGACACTGCAACAAA |
20 |
273 |
295 |
305 |
319 |
|
|
Z11257 |
18 |
AGAACAGGCTTGGCCAACTA |
20 |
CTTTGTGTACACGTGGCCTG |
20 |
108 |
|
102 |
|
|
|
Z11270 |
18 |
GGTCTGCAATCAGAGAGAAAAA |
22 |
TTAGCCAGATGCTGAGCTGA |
20 |
166 |
|
196 |
204 |
|
|
Z11608 |
18 |
ATCAGAAGAGTATTGTCAACGCA |
23 |
CACAAACTGAACTGCAGACTCC |
22 |
NA |
NA |
NA |
NA |
|
|
Z11685 |
18 |
TACGTCAACAGCTTCATCGC |
20 |
ATGCACTCCTGTCCCTCTGT |
20 |
198 |
282 |
236 |
|
|
|
Z11709 |
18 |
GCCTCCCTCATGCATACACT |
20 |
CTTTCTTCCATCTCCCCCTC |
20 |
123 |
|
115 |
121 |
|
|
Z11854 |
18 |
GCTGAAAGGCTGGAACATTC |
20 |
TTCAGTTCCCCGTGAAGTTC |
20 |
? |
|
? |
|
|
|
Z11944 |
18 |
GGGGGCAGTAAAGTCCTTGT |
20 |
TGTCTCTTTCAGCGCTCAGA |
20 |
261 |
|
235 |
259 |
|
|
Z13220 |
18 |
CGGCTTTAAAGATTCACTGACA |
22 |
TTGAGCAATAATGTGAAGCTGC |
22 |
128 |
|
124 |
126 |
|
|
Z13231 |
18 |
CCTGGAGCCAGGTACAGCTA |
20 |
CTCTGCTGAGCGAGAGGTTT |
20 |
251 |
299 |
255 |
275 |
|
|
Z13260 |
18 |
TCCTGACAGACTGCTTTTTGC |
21 |
AACTTCTCCCCAGTTCACATG |
21 |
NA |
NA |
NA |
NA |
|
|
Z13329 |
18 |
CCATATGACCTGGCTGGAAT |
20 |
CCAATGACATGATCACATCGA |
21 |
242 |
|
218 |
238 |
|
|
Z13380 |
18 |
AAACCGGAGACAGCAGGTTA |
20 |
CTGTGTTCTGCTCTGCTGCT |
20 |
209 |
|
203 |
205 |
|
|
Z13426 |
18 |
CCGTTCCTGGAGTCCTGATA |
20 |
GGATCCCAGACTTCAGGTGA |
20 |
122 |
|
112 |
|
|
|
Z13692 |
18 |
CCTAAATTGCGCATGCAC |
18 |
TGTGGATTCAGACAGCCTTG |
20 |
233 |
241 |
227 |
|
|
|
Z13768 |
18 |
CGAGCTGAAACATTCGACTG |
20 |
ACCTGTAGCCCCAGTTGATG |
20 |
269 |
|
331 |
399 |
|
|
Z13836 |
18 |
CCTGGAGCCAGGTACAGCTA |
20 |
CTCTGCTGAGCGAGAGGTTT |
20 |
? |
? |
? |
? |
|
|
Z14011 |
18 |
CACAGCTCACTCCAGCAGAA |
20 |
GACGGCTCTCTAGCGCTCTA |
20 |
? |
|
? |
? |
|
|
Z14048 |
18 |
AAAACCAATTAGCAGCGAGG |
20 |
GTTTGGGTCCCCAGTCTTTT |
20 |
NA |
NA |
NA |
NA |
|
|
Z14136 |
18 |
ATGATGCAGATCCCCTGTTC |
20 |
TCCTCTGAGAACTTCCTGCTG |
21 |
103 |
107 |
93 |
129 |
|
|
Z14176 |
18 |
GCAAACGCATAAACAACCCT |
20 |
TTTGATGGTAAATGGCGTGA |
20 |
? |
|
? |
? |
|
|
Z15417 |
18 |
CTGCAGTCTAGCCAGCAGC |
19 |
GACGGCAGCTCATTCTTCTC |
20 |
120 |
|
118 |
|
|
|
Z20015 |
18 |
ACACCACCTGTGCTTCATGA |
20 |
ACCTGTTTGTTTCCTGGCAC |
20 |
173 |
|
169 |
|
|
|
Z20602 |
18 |
ACAGACCAGAGAGCTGTTTTCC |
22 |
TGTTTATGGAGATGTGGCCA |
20 |
141 |
143 |
137 |
|
|
|
Z20605 |
18 |
TCCCCTATGAGCATGAATCA |
20 |
ACTAAATTCAGTGACAACCCGG |
22 |
136 |
|
154 |
|
|
|
Z20981 |
18 |
GGACGCTGGATTGACAGTTT |
20 |
GATCATGATGATTGACACTTTCG |
23 |
183 |
197 |
183 |
|
|
|
Z21330 |
18 |
TCCATCCAAAATCATATCTGTAACA |
25 |
GGCATTAAGCTTGACGTGGT |
20 |
309 |
|
273 |
|
|
|
Z21505 |
18 |
ACACCGCAACTCTTACCTGG |
20 |
CCGTGCAGGAACTCATACCT |
20 |
169 |
177 |
173 |
177 |
|
|
Z22032 |
18 |
GCATGTCTCTGCGTATGCAT |
20 |
CCTCATGCTCTCCCACTAGC |
20 |
137 |
141 |
141 |
143 |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
