Linkage Group 24 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z241 |
24 |
CAATTAAAGGTGCAGTGGAGC |
21 |
TTGGCCTCTGCTGTTTCTCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z249 |
24 |
TCTTCCCCTACAGGCACAGT |
20 |
ATGATACGCAGTCAACGTATCG |
22 |
147 |
149 |
141 |
151 |
|
|
Z911 |
24 |
GCTGCTTGTGGTGTGAAAAA |
20 |
TAATTTCATTCCACCTGCTGG |
21 |
NA |
NA |
NA |
NA |
|
|
Z1061 |
24 |
CATCGCTGGTTACTGCTGG |
19 |
TCTCTATTATAAGCCTCCTCACCG |
24 |
102 |
|
106 |
108 |
|
|
Z1233 |
24 |
ATTTCTAGTGCATTTCTCAGTTTGG |
25 |
CCCATACTGACACTGATGCG |
20 |
NA |
NA |
NA |
NA |
|
|
Z1243 |
24 |
CGTCAAGAGAGGACGACTAACC |
22 |
AAACAGATTTATACCAAGTTTACCTGG |
27 |
191 |
|
201 |
|
|
|
Z1584 |
24 |
ATAATGAACGTTTGGCGAGG |
20 |
AAGGAAGTCTTTGTGAATTGACG |
23 |
NA |
NA |
NA |
NA |
|
|
Z3310 |
24 |
GCCCCCTTTGTTGATTCATTC |
21 |
CAGCCCACTGAAACTCGCAA |
20 |
104 |
|
144 |
150 |
|
|
Z3314 |
24 |
ACACGCTCATTTCCCCCAAA |
20 |
ACACCCGAACCCTCCCAAAG |
20 |
NA |
NA |
NA |
NA |
|
|
Z3399 |
24 |
CTCCTAGGGTGCTCCGCCTT |
20 |
ACAGCAGATGCCCTTCCAGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z3901 |
24 |
GTCCAATCCCTCAAATCCCTCC |
22 |
TTGAACCTGCAGTGTGAAGCG |
21 |
NA |
NA |
NA |
NA |
|
|
Z4437 |
24 |
CGCCCACAACGCCATAGAAA |
20 |
TGTCCCGGTAAAAGTGAAGGTG |
22 |
NA |
NA |
NA |
NA |
|
|
Z5075 |
24 |
TGTGTTGTCTGATATGCCCACA |
22 |
TGCAAAAAGCCTCTAAGTGCCG |
22 |
216 |
234 |
198 |
222 |
|
|
Z5413 |
24 |
TTGATGATCCCACAATGCGG |
20 |
GGGATGTTTGCCAGCTGCTT |
20 |
NA |
NA |
NA |
NA |
|
|
Z5478 |
24 |
GGTTTATTCGGCTGTGGTGACC |
22 |
GATTGGTTCACAGACGCAGACG |
22 |
NA |
NA |
NA |
NA |
|
|
Z5624 |
24 |
GACAGCAGCTCCAGATCCAGTG |
22 |
GCGCTGTCAGGACTGTGAGC |
20 |
n |
|
172 |
|
|
|
Z5657 |
24 |
GCCATCATGGAGTCCAACCC |
20 |
TCCTCGTAAACCACCAAAACCA |
22 |
NA |
NA |
NA |
NA |
|
|
Z6020 |
24 |
ACTGCAGATCTTTGAACTCGG |
21 |
AAACAAAAATTGCTGAAGGGG |
21 |
190 |
|
186 |
202 |
|
|
Z6188 |
24 |
AACCCATTACTGGGAAACACC |
21 |
GAAACATCTGAACGCTGCAA |
20 |
170 |
|
188 |
204 |
|
|
Z6239 |
24 |
CCCTCTGATTATGTTACCACCC |
22 |
GAATCAACCAAAAGGAAAGAGC |
22 |
291 |
|
185 |
233 |
|
|
Z6296 |
24 |
ACCCTGCAGCTGTGATCTG |
19 |
GCAACACCGTAGCAACACC |
19 |
298 |
|
258 |
|
|
|
Z6438 |
24 |
ACGGAACCCAGATCAACAAG |
20 |
TCTGATGTTTGGCGTAGCAG |
20 |
146 |
152 |
142 |
144 |
|
|
Z6451 |
24 |
CTCAGGGACTAGATGAGGCG |
20 |
TACTCGTTTGCTTGGGCAG |
19 |
232 |
|
212 |
210 |
|
|
Z6923 |
24 |
TACCCACTGAGCCACCGT |
18 |
CTGCATTGGCCCTGAAAC |
18 |
? |
|
? |
? |
|
|
Z7132 |
24 |
TGTGTTTTCCCTCTGCTCTTC |
21 |
GTTTTGCATTTTTGCCCTGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z7234 |
24 |
TCCCAGAACAGAAGTCTGCA |
20 |
TATCTCGGTGTTCCTCAGGC |
20 |
162 |
182 |
144 |
186 |
|
|
Z7273 |
24 |
GTCGTCTGTTCTGCAGTGGA |
20 |
GCAGCCTCTTCAGGTCAGAG |
20 |
163 |
195 |
181 |
|
|
|
Z7292 |
24 |
GGAGTGTGTGGCATTAGCAG |
20 |
TGAATGAATGAATGTTCATGTTTG |
24 |
113 |
|
103 |
121 |
|
|
Z7324 |
24 |
AGTTTGAAATGGTGCAAGGC |
20 |
GACGGACACGTGTTTCCTCT |
20 |
142 |
146 |
132 |
148 |
|
|
Z7349 |
24 |
GGTTCGCTCTGCAGCAAC |
18 |
CGCACACTGGAGGCTGAT |
18 |
166 |
184 |
156 |
180 |
|
|
Z7627 |
24 |
TCCTGTTTCTCACTCGGGTT |
20 |
GCAGGAACACCAGAGTCACA |
20 |
238 |
? |
242 |
274 |
|
|
Z7823 |
24 |
AAGAGGCAAATGTTTGTCGA |
20 |
CGGTTATCGGTATCGGCTAA |
20 |
170 |
|
168 |
182 |
|
|
Z7895 |
24 |
GCAGTCTGTGGTTCCTGTGA |
20 |
TCAGAATGTTTGATCTGCGC |
20 |
256 |
264 |
320 |
n |
|
|
Z7967 |
24 |
AAAGCAAACTGTGACAGCGA |
20 |
TAGGTGTGTCCCAAACTGCA |
20 |
260 |
|
238 |
276 |
|
|
Z8130 |
24 |
TTCAAAGGTTCTGAATCCGG |
20 |
TCAGAAGCATGGTTCATGGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z8209 |
24 |
ATGCTGCGCCTTCCTGAG |
18 |
AATCAGTGTTTCCCAAAGCG |
20 |
208 |
|
204 |
210 |
|
|
Z8221 |
24 |
GGACACAGAGGTGGGACATT |
20 |
GGCGTTAGTTTGATCAGTTGC |
21 |
108 |
|
104 |
106 |
|
|
Z8259 |
24 |
AGCCTTCAGAATATGCCATAGC |
22 |
CAAGAAAGAGGGGGATACACA |
21 |
NA |
NA |
NA |
NA |
|
|
Z8314 |
24 |
GGGTTTGGGACACCTCTTTT |
20 |
GTTACCCTCCCGTATCAGCA |
20 |
180 |
|
184 |
190 |
|
|
Z8327 |
24 |
AAGTGCAGACGTCAGTGCTG |
20 |
TCTGCACGACAGTTACACACTG |
22 |
NA |
NA |
NA |
NA |
|
|
Z8382 |
24 |
ATGATGACAGTACTGCCTGTGG |
22 |
GATCTTACAGGTGGACCTCTGG |
22 |
190 |
206 |
222 |
242 |
|
|
Z8456 |
24 |
GGGCACCTGATGCTTCTTAC |
20 |
TTGGATGAACTGATTGATGGA |
21 |
189 |
|
179 |
|
|
|
Z8602 |
24 |
CTGTTTTCTGCTCCACTTTCG |
21 |
ATGATGAGCGGAGGAAAATG |
20 |
176 |
|
154 |
192 |
|
|
Z8969 |
24 |
GTTTGAACCCTCGTCCAAGA |
20 |
GAGCTTAGCAGTGTCTCGGG |
20 |
237 |
|
269 |
281 |
|
|
Z9127 |
24 |
TGCTCCGATCACTTGCACT |
19 |
GCGTTTCCTGTGATGGTTG |
19 |
267 |
|
251 |
|
|
|
Z9321 |
24 |
GCAATTGTGGCTCAAGTTGA |
20 |
CACGCTGATCTGCTGAAGTC |
20 |
208 |
|
216 |
224 |
|
|
Z9325 |
24 |
TCCAGAACCAGAGCTTTAGTCC |
22 |
GCAAGGTGAGAAGATGCACA |
20 |
217 |
|
219 |
229 |
|
|
Z9380 |
24 |
TTTGCATGTCTGTGAGAGGC |
20 |
AGCGAGAGCATGTGCGTG |
18 |
260 |
|
248 |
252 |
|
|
Z9387 |
24 |
TCAGGAGCTCAAGGGCAC |
18 |
GATCCTTCAGTGTCCCCTCA |
20 |
167 |
201 |
195 |
201 |
|
|
Z9603 |
24 |
AGCAGACCAGCATTTCTGTG |
20 |
GCTGGTTTATGGTGGTTCGT |
20 |
294 |
340 |
290 |
360 |
|
|
Z9673 |
24 |
TCTTCTTTAAAGTGCTGCTCCA |
22 |
ACCAGCGCTGTCTCAACC |
18 |
83 |
95 |
81 |
93 |
|
|
Z9851 |
24 |
ATCAGCAGCGGGTTACTCAT |
20 |
GCAGAGCTTCCAGGTCAGAT |
20 |
287 |
381 |
279 |
361 |
|
|
Z9852 |
24 |
ACAGCTCTTCTCCAGCAGGA |
20 |
GTGCCTTCCAATAAAGCCAA |
20 |
231 |
267 |
217 |
219 |
|
|
Z10257 |
24 |
GCAAACCCCTATGACAGAGC |
20 |
GAGTGAGTTTGGGGGTGAAA |
20 |
229 |
|
189 |
203 |
|
|
Z10372 |
24 |
TGCCTCACCATTACACTCTCTC |
22 |
AGGGTTCAGGTTAACCAGGG |
20 |
131 |
139 |
137 |
147 |
|
|
Z10440 |
24 |
GCGCTGTGTACATCAGCAGT |
20 |
GAGCAGAATGAGCGGATCTC |
20 |
184 |
|
198 |
224 |
|
|
Z10458 |
24 |
GAGATGCATTCCAGCACTGA |
20 |
AAGAGCAGCCCAGATGTCAT |
20 |
211 |
213 |
209 |
237 |
|
|
Z10529 |
24 |
GGGAAATGACACGTAAAATGC |
21 |
TGGTTATTGTGCTCTCAGGTG |
21 |
175 |
|
207 |
211 |
|
|
Z10961 |
24 |
AACCCCATCCAGACCTCTCT |
20 |
GTGACACGGGTCAGAAGGTT |
20 |
128 |
140 |
134 |
136 |
|
|
Z11862 |
24 |
TCAGACATAAGCATGAGCGG |
20 |
GAGGTGTGTGTTCAGCTCGA |
20 |
174 |
|
182 |
188 |
|
|
Z13229 |
24 |
GAATAAAAGTGGCATGCTTGC |
21 |
CAGCCCGTCTCAAACATACA |
20 |
|
|
|
|
|
|
Z13695 |
24 |
TGTCGTAGGACATGGGGATT |
20 |
TCGCTGCTTCGTTCTCACTA |
20 |
133 |
|
123 |
131 |
|
|
Z14086 |
24 |
AACACATCAGCACCTCCCTC |
20 |
AAATTTCTGCCCCACAACAG |
20 |
? |
|
? |
? |
|
|
Z17203 |
24 |
ACAGAAGACTCCTGTTTTTGGC |
22 |
TTGGGTAGCTAAATTGTGTGTG |
22 |
260 |
274 |
248 |
258 |
|
|
Z20051 |
24 |
GCCCACTGCATATGTGTGTC |
20 |
AAAAATCAGCGAAAATTCTCATT |
23 |
171 |
? |
135 |
143 |
|
|
Z20415 |
24 |
TGACAAAAACAACTGAACCCTC |
22 |
TCAAGCCATTCCATACTCCC |
20 |
175 |
|
137 |
167 |
|
|
Z20775 |
24 |
CGAGAGGCATGTCAGATCAG |
20 |
AGCCGGTCTGTGCTTTTAAA |
20 |
133 |
|
117 |
165 |
|
|
Z21011 |
24 |
CGGAGGATGGGGTAAATTTT |
20 |
CCCCACAGATCCAAGCTTTA |
20 |
202 |
|
190 |
206 |
|
|
Z21906 |
24 |
ACACCAGACATGAAGGCCTC |
20 |
AGAGCCATAACCGGATGATG |
20 |
138 |
142 |
82 |
122 |
|
|
Z21908 |
24 |
ATTGATTAGGTCATTGCCCG |
20 |
AGGAGTCATCGCTGGTGAGT |
20 |
149 |
|
145 |
|
|
|
Z22252 |
24 |
TCTGGTCCTGCCTCTCTCAT |
20 |
GCGGGAGGCATTTATTACAA |
20 |
232 |
|
236 |
|
|
|
Z22375 |
24 |
ATGTGGAAGCGATTAGCACC |
20 |
AAGCTGCCTTCACTTCCTCA |
20 |
296 |
300 |
216 |
270 |
|
|
Z22927 |
24 |
CGATCTGTTGACTTCCTGCA |
20 |
AAGGCATCTTTGACAGGTGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z23011 |
24 |
TTGGGGAAAAAGTCTGCTTG |
20 |
TCCAACATGTAAAAACCTGACAA |
23 |
NA |
NA |
NA |
NA |
|
|
Z23038 |
24 |
TTCAGCTGGTGTTTGAGGTG |
20 |
TTTTCAAAGCAAATGCAGGA |
20 |
NA |
NA |
NA |
NA |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
