Linkage Group 17 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z266 |
17 |
TCCGGCTGACATGAGGAAT |
19 |
ACGCTCTGCTTCATGGTCTT |
20 |
202 |
212 |
192 |
|
|
|
Z381 |
17 |
AAACGTTGTGATGTGATATTCCC |
23 |
TCTCCAGAAGCCTCGTGTG |
19 |
NA |
NA |
NA |
NA |
|
|
Z652 |
17 |
AGAGAGTGAGCTCTGGAACCC |
21 |
CACTCTTGAAGATGGCAGAGG |
21 |
128 |
|
140 |
|
|
|
Z852 |
17 |
CCAGACTAACCAGACCTGAACC |
22 |
GAACATACCTGAACAGAAAACACG |
24 |
NA |
NA |
NA |
NA |
Use at your |
|
Z1278 |
17 |
TCTCCAACGACAACAAACTG |
20 |
ACGTGGAACAGGCTATAAAACA |
22 |
NA |
NA |
NA |
NA |
|
|
Z1408 |
17 |
AATTCTGAAATTAAGATGTTGACCG |
25 |
GAAAACGCACATCACGTGAC |
20 |
101 |
|
280 |
|
|
|
Z1411 |
17 |
GCAGCTGAAACATCCAAACA |
20 |
CTAAAGACATGCAGTAAATTGAGTAGA |
27 |
144 |
|
112 |
|
|
|
Z1440 |
17 |
GTTCCCCTTCCCCACCAGTC |
20 |
TCCTCACTGCTGTGATGGCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1490 |
17 |
TGGTGTCCATGTAAACGTGCTC |
22 |
GCCAGCGCAACATCTCTGAA |
20 |
137 |
|
147 |
NA |
|
|
Z1928 |
17 |
GATGACGACATGAACCTGGGC |
21 |
CCACAACACCCTCCAGACCC |
20 |
NA |
NA |
NA |
NA |
|
|
Z1985 |
17 |
ACAGCAGATGCCCTTCCAGC |
20 |
AGTTAAGGTGCTGCGGTGGC |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z1990 |
17 |
GGGGCTAATCTCAGGCTAAACC |
22 |
TGCACCATCAGAGGCTGCGA |
20 |
NA |
NA |
NA |
NA |
|
|
Z3123 |
17 |
CCTATGGGGAGTCCTGTGAACC |
22 |
CTTCTGGCCTGTGCGGATTC |
20 |
NA |
NA |
NA |
NA |
|
|
Z3165 |
17 |
TCAGATAATGCAATCCTTGGC |
21 |
TTGGTCATTGGATGCAGAAA |
20 |
222 |
|
176 |
|
|
|
Z3894 |
17 |
CGTGAGGTGGCTCATATCAGG |
21 |
CTGACCCACACCTAATGATCCC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4053 |
17 |
TGGCGACATCTGCGATGTTT |
20 |
GGAAAGCGTCTGCCTCACGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z4268 |
17 |
GCTGCGTTACTCACCGAGAGG |
21 |
AGCCAGCTGAATTCCTGAAAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4314 |
17 |
GCACAAAACCTCACATGCGG |
20 |
GCTTCACCGTACCCACAGGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z4332 |
17 |
TAGGGTTGGGGTAGGGCCAT |
20 |
TGGAATTGGAGAACATACCCCA |
22 |
175 |
|
165 |
|
|
|
Z4640 |
17 |
ATTGTGACATTTTTGCATCGCA |
22 |
GCAACCCATCTCTGGGAAACA |
21 |
147 |
|
141 |
|
|
|
Z4853 |
17 |
AATGAATTTTGGCGTGGCGC |
20 |
CCTGCTGTTGCAACCACTGA |
20 |
399 |
|
n |
|
Use at your |
|
Z4862 |
17 |
ATGACCCTTCTGTCGGAGCG |
20 |
AGCCTGTCACCATTCACTGCC |
21 |
177 |
|
173 |
|
|
|
Z5504 |
17 |
AAAGCCGAATTGCTCAAATCAT |
22 |
GGTAATGGCCCAGCCCTGAT |
20 |
NA |
NA |
NA |
NA |
|
|
Z5679 |
17 |
TGGGTTTTCCATCCTCACGG |
20 |
TGGCTGTGCTTCAGCAGGTG |
20 |
NA |
NA |
NA |
NA |
|
|
Z6010 |
17 |
CTGCGACCGTGAGTGAAGT |
19 |
CCAACAGCACTCTGAGGACA |
20 |
119 |
133 |
158 |
|
|
|
Z6287 |
17 |
TGAAATTATGGCACAGTCAAGG |
22 |
TCGGTCAGTGGTGTGAACAT |
20 |
170 |
|
150 |
|
|
|
Z6290 |
17 |
TGCAAGCTTTCCTCTGGTTT |
20 |
GAAACACAACTGCATGCCC |
19 |
176 |
|
170 |
|
|
|
Z6359 |
17 |
CCATGGTGAAATGCATGCT |
19 |
TGGCATGCCCAAATGTTAC |
19 |
326 |
|
366 |
|
|
|
Z6454 |
17 |
TCCCTCATTATCATCCGAGTG |
21 |
GTTGCTGCTTTAGGTCAGGC |
20 |
182 |
|
190 |
|
|
|
Z6561 |
17 |
TGACTGAATGAATGGAGCAG |
20 |
GCACTGTTGGGGCATAAATA |
20 |
95 |
? |
121 |
|
|
|
Z6603 |
17 |
TCTGTTGAACATCATTTGGGA |
21 |
GACGTCTGTTATGTGGATTGAC |
22 |
236 |
|
184 |
|
|
|
Z6884 |
17 |
TCAAACTGTTTGAGGAAACCG |
21 |
GTTGCTCTTGAAACATGACATG |
22 |
365 |
|
359 |
|
|
|
Z7170 |
17 |
GGCGAATAGGATTCGACAAA |
20 |
TCATGGAGATGAGTGAGTTGCT |
22 |
184 |
|
152 |
|
|
|
Z7266 |
17 |
ACACAGATGAAGACCACAGGG |
21 |
TTTACTGCATCAGTGAGCGG |
20 |
131 |
133 |
137 |
|
|
|
Z7295 |
17 |
CTCTGCTTCTGACTGTATTGTCA |
23 |
AGTGCAGATGCAGACGTGTC |
20 |
169 |
191 |
231 |
|
|
|
Z7625 |
17 |
CAAAACTTCTGGCTTCCTGC |
20 |
CATTAACTCTCCTCCGCTGC |
20 |
258 |
280 |
234 |
|
|
|
Z7659 |
17 |
ACAATAATGGCAGGACAGGC |
20 |
ACGTTATTGTGGAACCAGCA |
20 |
243 |
|
215 |
|
|
|
Z8228 |
17 |
TGTCTGAATGCTGCATATGTTG |
22 |
TGTCTGTGAAGCCGAAGATG |
20 |
146 |
156 |
164 |
|
|
|
Z8771 |
17 |
CTTTGTTCTGATGGCGGATT |
20 |
CAACATCACGTGTTTTCCCA |
20 |
177 |
|
175 |
|
|
|
Z8774 |
17 |
GATGCCAGCAGTGATGCTAA |
20 |
GGCCAGCATTGCTACATTTT |
20 |
283 |
|
229 |
|
|
|
Z8845 |
17 |
TAAATGCAACAAACGGACCA |
20 |
GCCAAGTCATGCAACATCAC |
20 |
250 |
|
? |
|
|
|
Z8862 |
17 |
TCGCTCCACACCATTAATGA |
20 |
ACTTCTCCACCAAAATCCCC |
20 |
220 |
|
196 |
|
|
|
Z8884 |
17 |
CCTCCTTTACCCTTTCCGAG |
20 |
CTCACAGACACATGTGCACG |
20 |
142 |
|
172 |
|
|
|
Z8980 |
17 |
GCCCCAGGGTAACATTTAAC |
20 |
GTTGGGTGCTGGTTTTGACT |
20 |
194 |
|
164 |
|
|
|
Z9123 |
17 |
CTGTCAAGTATCATCGGGAGTG |
22 |
GCACTTTTCACCATATCAGGG |
21 |
154 |
|
146 |
|
|
|
Z9179 |
17 |
AGCTCCTCTGAGTGCACAGA |
20 |
AGATTAAAGGTCAACCGCAGA |
21 |
251 |
289 |
241 |
|
|
|
Z9287 |
17 |
TGCTTGTGTGTGGTAAATCTCA |
22 |
CATCACCGATACCTCCGC |
18 |
202 |
224 |
196 |
|
|
|
Z9337 |
17 |
AATCAGCACACTACCCAGGG |
20 |
TCCCAAAACTGGGACTAACG |
20 |
118 |
|
102 |
112 |
|
|
Z9426 |
17 |
TCTTGCTGTGAGGTGACAGTG |
21 |
GTCAAACTGGAAATCCAGACA |
21 |
217 |
|
201 |
|
|
|
Z9586 |
17 |
GCATTGTACTGCTGAAGAGGC |
21 |
GAGTTTCAGTCGACTGTGGAG |
21 |
? |
|
? |
|
|
|
Z9591 |
17 |
AGAGGCGTCAAACTGTCCC |
19 |
GCTTGAGAGTTTGACAGGGC |
20 |
? |
|
? |
|
|
|
Z9633 |
17 |
AGGAATCTCACAGACACCGG |
20 |
CGTGGGTGAGAGGTGAGGTA |
20 |
259 |
|
269 |
|
|
|
Z9692 |
17 |
CCAGGCGAGTTCTCTCTTTG |
20 |
AGAGCAGACGAGCTTTCCAG |
20 |
236 |
|
244 |
|
|
|
Z9818 |
17 |
ATACACAGCAAACAGGGTGC |
20 |
CAGCGTGCAACTAGACAGGA |
20 |
138 |
|
136 |
|
|
|
Z9830 |
17 |
GCTGCACTGTTCCTGTTTCA |
20 |
TGTGACTGGCTGGATGAGTAA |
21 |
? |
|
? |
|
|
|
Z9831 |
17 |
GAATCCCTGTGCCAGTTGTT |
20 |
TCAGGTGTCTTAGGAAAATTGTT |
23 |
175 |
|
187 |
|
|
|
Z9847 |
17 |
GGGCCAGACCAATTAGAACA |
20 |
GTGTTGGCTGCTCAGTTCAA |
20 |
173 |
|
225 |
|
|
|
Z9890 |
17 |
TGCTGCTGTTTTCAAGGTCA |
20 |
CTGGGGAGAGGAATCAATGA |
20 |
260 |
262 |
268 |
|
|
|
Z10247 |
17 |
CTCCTCCAGCAAACTGCTTC |
20 |
ACCACAGACACACCCGTACA |
20 |
163 |
171 |
157 |
|
|
|
Z10387 |
17 |
ATTGCACAGACATCAGCCAG |
20 |
ACGCAGGACGAGATCTTCAC |
20 |
284 |
|
290 |
|
|
|
Z10742 |
17 |
AGTTGCAACTGGCTTACGCT |
20 |
AATTTAGACAATGCCGCACC |
20 |
146 |
|
144 |
|
|
|
Z10824 |
17 |
TCCATCAGTTCGCAGATGAG |
20 |
CTGCACGAGCTCCTGTAGTG |
20 |
153 |
165 |
183 |
|
|
|
Z10941 |
17 |
CACAATGCAACACCATCACA |
20 |
GACTTCTGCTGCCGAGAAAC |
20 |
239 |
|
215 |
|
|
|
Z10985 |
17 |
AAGGAGGAAGTCACCAAGGG |
20 |
TCACACACTTCAAGGATCCG |
20 |
111 |
|
109 |
|
|
|
Z11202 |
17 |
GCGGTGATAGGTTTTGCATT |
20 |
CGTGTGAAATCCCCTCTGTT |
20 |
210 |
|
216 |
|
|
|
Z11340 |
17 |
ATCCAGCAGAACACCAAACC |
20 |
TGAAACACTCCTGTGGGACA |
20 |
239 |
|
253 |
|
|
|
Z11341 |
17 |
TCTCCAGAAATGCTGCTCCT |
20 |
GCTGGATCTCATGGGAGGTA |
20 |
259 |
|
277 |
|
|
|
Z11456 |
17 |
AAATCTTCAGGTCCACACGC |
20 |
TGCCACCCTTCTGTTGAAAT |
20 |
165 |
|
171 |
|
|
|
Z11774 |
17 |
GTGTTGGCTGCTCAGTTCAA |
20 |
AATAGATGCCCACCGACAAG |
20 |
136 |
|
188 |
|
|
|
Z11807 |
17 |
TGACCAGATCTTCCCCAAAC |
20 |
TCTGTGTTAGCAGATGATGAACG |
23 |
? |
|
? |
|
|
|
Z13336 |
17 |
AGAAGAGGAGGCGGAGTCTT |
20 |
TGCTAGTGTGAGCAGATGGG |
20 |
183 |
237 |
199 |
? |
|
|
Z13385 |
17 |
AGCTCGGTTTACAAGTGCGT |
20 |
TTTGTATTCCTACCCTGCGC |
20 |
119 |
|
117 |
|
|
|
Z13557 |
17 |
AGCACTGCCTGATACCGTCT |
20 |
TTGATGTGCTCTGCTTGGAC |
20 |
240 |
|
244 |
|
|
|
Z13631 |
17 |
TCTGCTCCCTGTTGACTGTG |
20 |
CCATCATCCTAGCCATTGCT |
20 |
294 |
|
220 |
|
|
|
Z13643 |
17 |
CCATTTGTGCTGAAGTGTGG |
20 |
AGGACAATGGCTGAGGTCAC |
20 |
204 |
|
200 |
|
|
|
Z13823 |
17 |
TCACTCCCACATACAGGCAA |
20 |
AACGGCTTAGCAGGAAGTGA |
20 |
? |
|
? |
|
|
|
Z14082 |
17 |
GTTTCATGAGCATGTGCTGC |
20 |
TCAATCACACAGCTAAGCCG |
20 |
? |
|
? |
|
|
|
Z14083 |
17 |
CCTCTTCCCACAAGTCCATT |
20 |
TTCCCAATTAAAGCAAACGC |
20 |
? |
|
? |
|
|
|
Z20006 |
17 |
GAAAGCATCAAACACTGCCA |
20 |
GGTTAAATGTCAGGGGCAAA |
20 |
224 |
|
192 |
|
|
|
Z20132 |
17 |
CATGAGAAGCTTTGGCAACA |
20 |
GTCAATTTGGTGGAGCAGGT |
20 |
? |
|
? |
|
|
|
Z20803 |
17 |
TTTCTTGACATACGGCCTCC |
20 |
CAGCATGGCTTTTGAAATGA |
20 |
200 |
|
148 |
|
|
|
Z20842 |
17 |
TACACACAATGGCAACTGCA |
20 |
TGACAGACACTGAAATGGCC |
20 |
202 |
|
174 |
|
|
|
Z21122 |
17 |
TTTTTACTAATGGCCGGTCG |
20 |
ACCTGGGTGTCAGAAGCACT |
20 |
210 |
|
178 |
|
|
|
Z21144 |
17 |
CCTGTGAATGTGGACACTGG |
20 |
TGTCAGCATTGGTCCTTAGC |
20 |
170 |
|
194 |
|
|
|
Z21151 |
17 |
TTGTCCACCTTTAACCCTCA |
20 |
CCCAGGAACTGCATGTCTTC |
20 |
NA |
NA |
NA |
NA |
|
|
Z21194 |
17 |
AGTTCACCTTGAGGCCCTTT |
20 |
ATGCTTTTCTCTCTGCGCTC |
20 |
208 |
|
166 |
|
|
|
Z21265 |
17 |
ACGTGCATTGTAACCCCTTC |
20 |
CAGGTAAACCTTGGGCCTTT |
20 |
138 |
|
136 |
|
|
|
Z21435 |
17 |
GGGCATGCAGAAAGAATGTT |
20 |
TCTCCCTCTTTTGCTGGCTA |
20 |
? |
|
? |
|
|
|
Z21703 |
17 |
CACAATCAGATTAAAATCCGCA |
22 |
ATCGCTGGAATTACCACCAC |
20 |
123 |
|
109 |
|
|
|
Z22016 |
17 |
GCCTCCAGGTCTGTTCTTATATTT |
24 |
ATTGCCCTATGGACACAAGC |
20 |
258 |
|
276 |
|
|
|
Z22083 |
17 |
GCACATTGTAGCTCGCTCTG |
20 |
CTCAGACCACCACCTGTCCT |
20 |
193 |
|
195 |
|
|
|
Z22279 |
17 |
AGCACCTCAGACCAGATGCT |
20 |
CCATAACAGATGGGGTGAGG |
20 |
215 |
|
207 |
|
|
|
Z22667 |
17 |
AGCTGTGGCTGGACAAAAAG |
20 |
AGGAGTGAGTCTGGGGGTTT |
20 |
NA |
NA |
NA |
NA |
|
|
Z22674 |
17 |
AAAGTCTTTAGGCCTTTTACAATGA |
25 |
CGTTCCCAGATGCTTTCAAT |
20 |
NA |
NA |
NA |
NA |
|
|
Z22901 |
17 |
AGAAACCCATTTCTGCATGG |
20 |
GGTCCATTTGTTGAGCGATT |
20 |
NA |
NA |
NA |
NA |
|
|
bmp4 |
17 |
CTGTGAGGAGCTTCCATCACGAA |
23 |
GGAATCGGCAGAGGCTGTCTCC |
22 |
NA |
NA |
NA |
NA |
|
|
GOF12 |
17 |
TCACTCACTGGGAATGTAGGG |
21 |
ACAAGCAGAGACATAATCAACTGC |
24 |
157* |
NA |
NA |
NA |
"Goff, et al., |
|
gsc |
17 |
AGACAGAAAAGGTCGTCGTCA |
21 |
ACAGCCCATTCCAGAACATC |
20 |
401# |
NA |
NA |
NA |
"Postlethwait, |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
