Linkage Group 08 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
GOF9 |
8 |
ATGCTGCCATTATGGTAGTGC |
21 |
TTCACTTGGATAAAGTACTGGGTG |
24 |
124* |
NA |
NA |
NA |
"Goff, et al., |
|
Z140 |
8 |
ATTTGGCAGATTCCTTCATCA |
21 |
GGAACACCTGTGCCCGAG |
18 |
NA |
NA |
NA |
NA |
|
|
Z170 |
8 |
CTGAAAGTCTTCACATCTGTGACA |
24 |
GAATAAAGGTGGGGGGTGTT |
20 |
NA |
NA |
NA |
NA |
|
|
Z789 |
8 |
CTCCTGCTGGCCCAGTAAT |
19 |
ACTGAACATTCAGGCTTAAATGC |
23 |
201 |
|
203 |
|
|
|
Z870 |
8 |
TTCCGGCTCTCAGTGTCTTT |
20 |
CCTGACCAGCATAGAGTCATG |
21 |
NA |
NA |
NA |
NA |
|
|
Z987 |
8 |
TCTGGTTTCACATTAACATGTGC |
23 |
ATCTGCTATCGGCTCTGTTAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1052 |
8 |
CCCATTGGAACTGAGACACCTT |
22 |
ACAGGGGGGGCTAATAATTCTG |
22 |
138 |
176 |
142 |
|
|
|
Z1068 |
8 |
GGTGAGAAACACAAGAGCAGC |
21 |
CAGACCCAGATTCTTCAGCC |
20 |
122 |
|
132 |
|
|
|
Z1231 |
8 |
CCCAAATGTACAGGACCGG |
19 |
CGCTTTACCTGTTACAGTGCC |
21 |
NA |
NA |
NA |
NA |
Use at your |
|
Z1402 |
8 |
GATCAGGGTGCATGTACTGAA |
21 |
TCTGCTTTCTGTCAGGGGAT |
20 |
169 |
185 |
179 |
199 |
|
|
Z1569 |
8 |
GAAAGTAACATGGCATATAAGTCCG |
25 |
CCTGGAGCCTGTGTTTTGTT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1634 |
8 |
AGCCACAGCGCTGGAGATTC |
21 |
GTGAGTCCAACACACCGCGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1637 |
8 |
GGCTTTTGGATGAAGGTTGAGC |
22 |
GGAATCACAATGGCAGCAGA |
20 |
105 |
143 |
103 |
109 |
|
|
Z3083 |
8 |
ATGTTCGATGTTCTGCACTTGC |
22 |
GCTGTGAGGCGAACGTGCTA |
20 |
NA |
NA |
NA |
NA |
|
|
Z3526 |
8 |
AGCTGGTGTATTTCGGAGAGCA |
22 |
CACACACTGACGTGCGGATG |
20 |
NA |
NA |
NA |
NA |
|
|
Z3885 |
8 |
TCCTTGCGAGAGCAAACGTG |
20 |
CTGGGATCCACACAATTCCTCC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4077 |
8 |
TTCACAGCTTCAGTCCTGCTGG |
22 |
TCACGTCTCACCAAGAACCAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4318 |
8 |
GACCTAATAAAGTGGCCGGT |
20 |
TGGTGAAAGCGCCCATCTTT |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z4323 |
8 |
TCTGTCCTCTCGTCCCCGAG |
20 |
AAATTAGCACACGTCGCGCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z4637 |
8 |
ATCAATGGATTGGACATGGGTT |
22 |
TCTGTGACTCTACAGCGCCCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z4956 |
8 |
GGGGAACGGAGGTCGAAATC |
20 |
GTTGCGAGCTCCCAGCAAAC |
20 |
263 |
|
239 |
|
|
|
Z5081 |
8 |
GCCCCCCTGAATTATTAGCACC |
22 |
CGGTGAAGTTACGGTACCATGA |
22 |
211 |
|
189 |
|
|
|
Z6058 |
8 |
TAACCGGACTCACCAGAACC |
20 |
AGACGGGGCTGAGATTATTG |
20 |
310 |
|
306 |
|
|
|
Z6763 |
8 |
TGATGACCTCCTGACAGTCG |
20 |
ACCCAGAGGTAAGACGCAGG |
20 |
133 |
|
119 |
121 |
|
|
Z6764 |
8 |
ACTTGAGAGGAATCAAGCAAGC |
22 |
AGGACAGTATGACTGCAGTCTG |
22 |
155 |
197 |
161 |
|
|
|
Z6867 |
8 |
CATCTTACACTGAGTACAGCGG |
22 |
ATCCACTGCAGTGTTTATCCG |
21 |
? |
|
? |
|
|
|
Z7130 |
8 |
GGAGTGTATTTGGGGCTTGA |
20 |
CAATACTCCCTCCCACAGGA |
20 |
329 |
|
185 |
|
|
|
Z7370 |
8 |
GCAACAACCAATATTTGCCA |
20 |
AAGTCCTGACTCGAACTTCCC |
21 |
157 |
|
131 |
|
|
|
Z7535 |
8 |
TAGGCATGATGTTCAGAGCG |
20 |
TCACTGCAGTGTTGGAGGAG |
20 |
95 |
137 |
93 |
103 |
|
|
Z7642 |
8 |
CTGAGGGTGAACTGTAGAAAGTG |
23 |
GATTGCACAAAGGAGGGTGT |
20 |
191 |
199 |
113 |
121 |
|
|
Z7671 |
8 |
ATCATTGGAGCAGATGAGTGG |
21 |
GCCATGTGAAAGGGCATC |
18 |
231 |
|
239 |
255 |
|
|
Z7819 |
8 |
TTTTCATCTGCTCCCCAGTT |
20 |
TTCACATGGACAACAGTGCA |
20 |
146 |
134 |
156 |
|
|
|
Z7856 |
8 |
CAGCAAACCCTCTGAACACA |
20 |
CTGGCACACAGACAAGAACA |
20 |
128 |
|
184 |
196 |
|
|
Z7962 |
8 |
AATCAATAACTCAGGCAGGCA |
21 |
ATACGCGCACGTCTCTCTTT |
20 |
197 |
223 |
177 |
255 |
|
|
Z8474 |
8 |
CCCACATCAGGTCAGGAACT |
20 |
TCCTGCTTCACATGCTGAAC |
20 |
271 |
? |
283 |
317 |
|
|
Z8703 |
8 |
GGCTGAGGATCATGTTTCGT |
20 |
GGGTGAATGTATGACATTTTGG |
22 |
284 |
|
240 |
258 |
|
|
Z8770 |
8 |
GCACAGCATGGCTCTTTGTA |
20 |
TCCAAAATTCCACTTCTGGC |
20 |
264 |
|
190 |
|
|
|
Z9006 |
8 |
AAAGTGAAATCAATCCCACCC |
21 |
TTTCTCGTTTTCTCCCTCACA |
21 |
218 |
222 |
178 |
198 |
|
|
Z9279 |
8 |
TGCATAAAGTCAGGAGGTTCA |
21 |
TCTGCGCTTAACAATGCACT |
20 |
150 |
154 |
144 |
166 |
|
|
Z9420 |
8 |
CGCCATACAGCAGAAACTCA |
20 |
TGGCCAGTGCTGATTTATTC |
20 |
140 |
|
138 |
n |
|
|
Z9637 |
8 |
AGTGACAGCACCATGTTATTGG |
22 |
ACCACTAGGGACGTCAATGC |
20 |
160 |
|
184 |
|
|
|
Z10048 |
8 |
GCAGCTTTTACTCCCAGTGC |
20 |
CTTCATTGGTCATGTGTCTGG |
21 |
235 |
|
223 |
|
|
|
Z10121 |
8 |
GCATTCACTGGAGAAGCACA |
20 |
CTGAGCAGAAAAGCAGCCTT |
20 |
100 |
|
106 |
|
|
|
Z10337 |
8 |
CTCCACTCACTGAAGGAGGC |
20 |
GCGCTACATGAGAGTCCTCC |
20 |
297 |
|
299 |
303 |
|
|
Z10546 |
8 |
GCAACCAATGGGATTATGCT |
20 |
GGTTGATGGAGAGGACAGGA |
20 |
188 |
222 |
176 |
200 |
|
|
Z10731 |
8 |
TTGAGTCAGTGAATCTGAGCTG |
22 |
GCGGACGCAGGTACAACAT |
19 |
183 |
189 |
179 |
181 |
|
|
Z10868 |
8 |
TGGTGGAAAATGACACTCGA |
20 |
TGTCTCCTGGTTTAGCCACC |
20 |
213 |
281 |
209 |
229 |
|
|
Z10929 |
8 |
GCACACCATCATGATTGAGG |
20 |
TGTGTTTCATCACGGTTTGC |
20 |
141 |
161 |
113 |
123 |
|
|
Z11001 |
8 |
GGATCTGACAGGGGAGATCA |
20 |
CGAGGTGTTTTTCTCTCATGC |
21 |
149 |
167 |
175 |
|
|
|
Z11148 |
8 |
TGCTGTCTTACCTATTTCAGCC |
22 |
GATAACATGCAGACTCGCCA |
20 |
83 |
113 |
91 |
95 |
|
|
Z11237 |
8 |
CCACAGGCACCCTCATCAT |
19 |
TTGAATAGCTGGGGTTACGG |
20 |
163 |
? |
219 |
|
|
|
Z11383 |
8 |
GAGGACTGGCTTCTGTACGC |
20 |
CACTGGAGGGCAACACCTAT |
20 |
? |
? |
? |
? |
|
|
Z11492 |
8 |
CTGCTGAAGGAGCTGAGCTT |
20 |
CAAGAGCTCAGACGAGAGGG |
20 |
127 |
189 |
113 |
117 |
|
|
Z11623 |
8 |
GCTAAGAAAGACGCATTACGC |
21 |
TTATGCGTGTTGAATTTGAAGG |
22 |
|
|
|
|
|
|
Z11641 |
8 |
GCTCTGCAGGGGTTAAACTG |
20 |
ACCGAACATCCACACAGACA |
20 |
222 |
252 |
188 |
198 |
|
|
Z11922 |
8 |
GTGATGATGAAGGTGGGCTT |
20 |
GGGCTACAGCTTCCACTGAG |
20 |
238 |
266 |
250 |
300 |
|
|
Z11946 |
8 |
TCGGCTAATGACACCTACCC |
20 |
TCTGGAGCCCTAAAGGGATT |
20 |
294 |
|
258 |
318 |
|
|
Z11948 |
8 |
CAGTTCAGTGATGGTCACTCG |
21 |
TTCAGTCTGTAATTGCAGGTCG |
22 |
251 |
277 |
221 |
|
|
|
Z13288 |
8 |
AGTCTCACGGTGAGTCTGACA |
21 |
GGCAGCTTTCCCATCATG |
18 |
156 |
162 |
154 |
170 |
|
|
Z13360 |
8 |
GCATTCACTCATCATCAGCG |
20 |
CATACAAAAGATACAGGCATGCA |
23 |
126 |
142 |
132 |
148 |
|
|
Z13412 |
8 |
TGGTAAGGGAAGGAATGACG |
20 |
GCCTGTCATACCGCTCTGAT |
20 |
252 |
|
258 |
|
|
|
Z13418 |
8 |
TCTCAGCAGCTGTTGATTGG |
20 |
TGCAGAGGGGTTTAATCCAG |
20 |
217 |
|
205 |
207 |
|
|
Z13565 |
8 |
ACTCACCCACAGGGACTCAC |
20 |
GATCAAACCGGCATTGTGAT |
20 |
124 |
|
132 |
200 |
|
|
Z13984 |
8 |
GCTTCAAATCTCATGGAGCC |
20 |
GTGAAACAGCCTGGCAAAAT |
20 |
? |
|
? |
|
|
|
Z14025 |
8 |
TCTCATATCCTCCAGCCCAC |
20 |
CCTATTGACTCTGTAGACCCCG |
22 |
161 |
|
167 |
|
|
|
Z20106 |
8 |
GAAGCAGGCTCTGTTCATCC |
20 |
AACGCATGAGGAGTGTGTTG |
20 |
? |
? |
? |
? |
|
|
Z20113 |
8 |
TGACGTCACACATAGACCCC |
20 |
CATGCCTTGCGTTTATTGTG |
20 |
? |
|
? |
|
|
|
Z20180 |
8 |
CCTGCTCTGACCCATCTCTC |
20 |
GAGAAAGCAGCCAAACGAAC |
20 |
205 |
243 |
203 |
231 |
|
|
Z21115 |
8 |
AAGGTTTCTCAATGCCAGAA |
20 |
CATCCTTGCTTTGGTCACAA |
20 |
300 |
336 |
296 |
|
|
|
Z21315 |
8 |
CACAACACATTTCTGTTGTGGTC |
23 |
GCGCAAGTTTGTTTAGAGGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z21390 |
8 |
CAAAAACACAGAACTGGGATTG |
22 |
GTGGGAATTGGACTCAGGAA |
20 |
165 |
|
137 |
145 |
|
|
Z21465 |
8 |
AGGCAACCATAGCAACCATC |
20 |
GCTCCCCATCTCTGAGTCTG |
20 |
164 |
|
170 |
188 |
|
|
Z21483 |
8 |
TTTGCATGTGCCTCAAAAAG |
20 |
TCCACGAAATCATCCTCACA |
20 |
112 |
|
120 |
206 |
|
|
Z22270 |
8 |
CCCCTTTCGAAAAGACATCA |
20 |
TGCTGAACATCAGAGCTGCT |
20 |
194 |
246 |
198 |
238 |
|
|
Z22307 |
8 |
CCATGCAGTCCAAATGCATA |
20 |
ATTCATCTTGCTCCCCACAG |
20 |
223 |
|
205 |
215 |
|
|
Z22483 |
8 |
ATGCCCATCTGACAACCAAT |
20 |
CTGTCTCTCCCAGAAGGACG |
20 |
143 |
|
137 |
|
|
|
Z23009 |
8 |
TGCATGACCTGCTTCTCAAC |
20 |
GCTTTCACAACTGCCGCTAT |
20 |
NA |
NA |
NA |
NA |
|
|
Z23039 |
8 |
CCCTACTGTGAGCATGAGCA |
20 |
GAACTGAGAGAATAGCAGGACGA |
23 |
NA |
NA |
NA |
NA |
|
|
GOF13 |
8 |
CTGGCCTTTGGTTTATCATACATT |
24 |
CATGGATTACTTTCACTAAGCATG |
24 |
208* |
NA |
NA |
NA |
"Goff, et al., |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
