Linkage Group 10

Linkage Group 10 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number	Linkage Group	Forward Primer Sequence	Length	Reverse Primer Sequence	Length	AB_1 Size	AB_2 Size	In_1 Size	In_2 Size	Comments	dbSTS Accession
Z355	10	CAGCCTGAGCACACAGAGAC	20	GCACAGGCCTAATAAGACGC	20	NA	NA	NA	NA
Z531	10	GCAGGTTGCTCTGGTTTCTC	20	TTTCCGATGACAGATCGTGA	20	118		126			G41407
Z744	10	TATACTGCTTATTGGTGAAATCCG	24	CTGTACAGCCCAGACAAGAGC	21	115	145	93	159		G40556
Z1145	10	GGGAACGACCCTTTTCAATT	20	TCCAAGTTGGCATAGATGTATCT	23	199		147	211		G39911
Z1296	10	GCCTCATTTCTCTCGTACGC	20	TGGGTGGGCTGTTTCAGT	18	258		250			G41353
Z1450	10	AACGTGTGTTCAGGACAGTGGC	22	AGAGGGAAGGTCAGCAGGAAA	21	238	250	206	220		G41374
Z3054	10	GCTCAGTGGAAAAACAATGAAAG	23	CGCGCTTAAATCGATCAATGC	21	NA	NA	NA	NA
Z3260	10	GCTGGTCTTCATCCCAGAATGG	22	TGGTCGGTGAGTTTTTACAGCC	22	NA	NA	NA	NA
Z3455	10	GGGTGGGGTGAGGGCAATAT	20	AACGAGGCCAGTCAGTAATGGC	22	NA	NA	NA	NA	Use at your own risk	G41446
Z3835	10	TCACCATTTTCACAAATTGGCA	22	AAATGGAGATTCCGCTAAAGCA	22	122	132	230
Z4738	10	CACAGCGGATGCTCTTCC	18	GTATAGGGGAACTAAATCGGCC	22	150		172		Use at your own risk	G41535
Z6183	10	TTCACATGTCTGGAATGGACA	21	CGCATTAATCTGGAGAGAACTG	22	152		102	116		G41800
Z6195	10	CACTGTCATCAACCCATTTCC	21	ACCTTTAGAGACAGAGGAGCAA	22	NA	NA	NA	NA
Z6346	10	CTTCAGGAGTCGTCAGGATTG	21	TTATGAGCCACAATCTGGACC	21	189		153	165		G40425
Z6390	10	GGCCTTCGATCCAAAGATCT	20	GTGCCTATCGAGGAGTCGAC	20	132	148	128	132		G40430
Z6410	10	TCTGATTATTCTCACCTGCCG	21	ATCAAACACATCTGCTCCCC	20	156		142	162		G40431
Z6427	10	CATGCATGCACAAATGCAC	19	GTGCGCATTTTCAACTCTGA	20	132	n	144	180		G40437
Z6648	10	ATGTCCTCCAGGGAAATGTG	20	ACAGCCTGCAGAAAACACAT	20	252	288	202	?		G41801
Z6754	10	TTGAATGCTTCGTTTAGGAATG	22	CAGATCCCATGTGCAGAGC	19	138		124	128		G41124
Z6992	10	GTCCATGTAACCTTTGCATGC	21	ATTCATGTTTTGCTTTCCGC	20	?		?			G41136
Z7028	10	CAACACCAGCATAGCCATGT	20	TGTGACAAGGTCAGTGGAGC	20	151	237	147	207		G40495
Z7088	10	TCAATTAAAGAGCCTGACGAG	21	AGTGTGTTTGTGTGCATTTGTG	22	261		257			G41138
Z7123	10	TGTCAGTCCAGATGTGTAACGA	22	TCATGTTCTCCGGATCATCA	20	277	283	269	275		G40505
Z7262	10	CATGTGCCTGCGAGACAC	18	TTTTTCATTTGCAGGCAGC	19	413		355			G41628
Z7316	10	GTGGACATTTGGGGTGAAAG	20	GAGGTTTTGCGCTGATGAAT	20	NA	NA	NA	NA		G39653
Z7388	10	TCAAGGCAAAACATTAAGGTGA	22	CACCCCTGATCCACACTCTT	20	264		228	234		G40554
Z7504	10	AATTGGGCTGCGTTTCATAC	20	TTCCACCTCCTGTAACCTGC	20	160	176	168	196		G41150
Z7558	10	TGGCTCATCTGATATTGCCA	20	AGAAACAAACCGACCATTGC	20	180		188			G40571
Z7810	10	GTTCTTCCTCTTTCCCCAGC	20	ATGAACACGCGTTCACTCAG	20	161	171	161	163		G41667
Z8146	10	AGCGGAGATGATGACTTGGT	20	TCCGCCTCTAGAGAGACTGC	20	142	160	146			G40626
Z8220	10	CAGCATCAAATATTTGTGTGGG	22	CTTTTGCATACAATGCACATCA	22	220		214			G41164
Z8249	10	CCAGTGTGTTACCGTGCATC	20	ACCGTGTCAGAGAGTCAGAACA	22	197		183	227
Z8318	10	ATGCCACAACAATTGTTCGC	20	AAGAAAGCACGCGCACAC	18	190		194			G40642
Z8463	10	TCTCTCCATCTGGGTTCCAC	20	CTTCGGAGGACGAGACAGAC	20	206		214	285
Z8705	10	CACTGCAAATGCCAATCATC	20	TCAGATGGTGAGAGCACAGC	20	231	249	227	285		G40678
Z8988	10	TCTGAGGAAAGAGGAGCCTG	20	CAGAACACACTCCGTCTCTCTC	22	241	299	271	n		G40714
Z9096	10	GCTGATCCCATCATGCTTTT	20	AATAAGGGACTAAGCCGAAAGG	22	234	n	270			G40904
Z9199	10	GAGCCGCTTACATCTGAAGC	20	CTGCACGTCCACTCAGCTT	19	186	232	184	191		G40746
Z9208	10	GTGCCGTGCTCTCACTCAT	19	CTGCAGACTGTCACCTGTGC	20	159	201	171	178		G41632
Z9328	10	CTTTCACAACATTTTCATTCGC	22	CCAATCAGGAACTGAGGGAA	20	176	232	174	219		G41179
Z9413	10	ACTTCCGTCTGCTGGAGAGA	20	TAAGCTACGGCCACTGCA	18	219	221	217	284		G40788
Z9436	10	AGACACACTCTGGACACCCC	20	GGAGGAACTCGCCATTTACA	20	162		150			G40795
Z9473	10	TGCTGTCTTCTGTCAGGAGG	20	GGAGCAGCTGGATACGACTC	20	249	259	261			G40798
Z9574	10	CTGCTTCAACTGTGTCATGTCA	22	GGCCTCTGTTACATAGACATGG	22	?	?	?			G41186
Z9701	10	CACTGATGCTCTCACCTCCA	20	ATGCTTGTGTGGGTGTCTCA	20	125		103			G40827
Z10143	10	ACATGCATGCTGAGAGCATC	20	CATCGCCGAGTCTGTCAGT	19	137		159			G39754
Z10251	10	GCTCAAGGACAACTCCGAAG	20	CAGTAACACGGGGAAACGTT	20	328		252	256		G39768
Z10279	10	CTGATGTCACAGCGGAGTGT	20	AACATCCAGGTGAGCCAATC	20	250		268	274		G39773
Z10384	10	CCAATCAGGAACTGAGGGAA	20	CGGGACAGACTTGAGTGTGA	20	208	262	206	210		G39789
Z10647	10	TGCTGCAAAATAAAACAGTGTG	22	TGTGTTTGTGTTCAGCGTCA	20	174		200	266		G41702
Z10765	10	ATCCAGGTTGACAGACGTCC	20	GCGGGTAGAGCTGTATTTGG	20	273	299	259	273		G39827
Z11229	10	GCAGGAAAGCCAGAATGAAG	20	CACAAGACAGCGAACAGGAA	20	114		136			G39879
Z11602	10	ACGCTTGAGCCTGAGACAAT	20	AGGATCCATTTGCGTGTCTC	20	200		204			G39934
Z11911	10	AATCAGCCAGCTGCATCTTT	20	TATAAACGGCTCCCTTCCCT	20	258		224			G41755
Z13219	10	CAAAAACAGCAGTATCCGCA	20	GGTCCCCATACAGCTGACAC	20	200	214	178	184		G41802
Z13314	10	CTCCAGCCAAAGAAAACGAG	20	GGAGGCTCAGACAGGTGAAG	20	153	155	151	161		G40007
Z13632	10	AGGATGATGAAGACGGATCG	20	TCGCCTGAGGTGAGTTTTTC	20	262	264	306			G40049
Z13685	10	TCCAATGCACAGGTAAACCA	20	AATGAGTTTCAGTCCACCGC	20	285		293			G40060
Z13875	10	CTCCCAAGAGCCGTACACTC	20	CAGCCTTTAATGGACACCGT	20	?	?	?	?		G40082
Z14193	10	GCTGCTCATGCAATGGTAGA	20	GTGAACCTGACCGACCTGAT	20	?		?			G40114
Z15444	10	GTCCCGCTGCTGATCTAAAG	20	TCCCCCGTCCTCTAAAGTTT	20	NA	NA	NA	NA		G41096
Z17219	10	CCACAGTCCACCAAGACATG	20	GCTACAACACAGCTCGTGGA	20	179		157
Z21976	10	GCGCTCTTGTTTGACCTTTC	20	CCGCAGTGTCAGCAGAAAT	19	101		105			G40279
Z22422	10	CCCTTGAGCAAGGCATTTAA	20	TCGGTATTGGCAAGTAAGGG	20	218		174	202		G40319
Z22661	10	CCTATGCACTTTGCCCCC	18	CATCAGGCATGATTCTGTGG	20	NA	NA	NA	NA		G41722
Z22928	10	GGTGCAGAGTCATGCTTTGA	20	TTGTTCTGGTTGTGCTGGAG	20	NA	NA	NA	NA		G39528

Legend

Table generated Wed Oct 7 16:28:07 1998