Linkage Group 12

Linkage Group 12 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number	Linkage Group	Forward Primer Sequence	Length	Reverse Primer Sequence	Length	AB_1 Size	AB_2 Size	In_1 Size	In_2 Size	Comments	dbSTS Accession
Z10457B	12	ATATTTCTCCGGTGGTGACG	20	GCCAAACACACACAGATTCG	20	NA	NA	NA	NA		G41852
Z247	12	GATTTACCTGTTTCACAGCATCC	23	CATCCTGAGATGTCATCTGATAGA	24	NA	NA	NA	NA
Z937	12	AGAGCTAGCGCTGAGCTAACA	21	TCTCTCTGTTCATCAGCAGCA	21	NA	NA	NA	NA		G41429
Z1141	12	TCTGTCCTGTGCGCAGAG	18	AGTTCCAGTGCAGACGGTG	19	138		130	140		G41326
Z1146	12	ATGCCACCCCTCTCCTTC	18	TGCCAACATGCTAACAATATCC	22	144		138	142		G39915
Z1176	12	GAGGATTTAATCATCATTTGCTCC	24	AAACACCACGATCAGCAGC	19	NA	NA	NA	NA		G41333
Z1179	12	CAGGGAACCGTCACATTCAGC	21	TCTGCAGACTCCCACTGACCC	21	NA	NA	NA	NA		G41334
Z1225	12	CGAGCCGATAATGAATATACAGC	23	CCACCGTGACACCCTTAATT	20	NA	NA	NA	NA		G41343
Z1312	12	AGGACAACACCTGCAGCC	18	TGGGATGAGCTGAAGTTCCT	20	139	181	139			G39996
Z1358	12	TAATGACAGGCTGCACATCTG	21	GGAGCAGGGTCTGAGGGT	18	NA	NA	NA	NA		G41357
Z1365	12	GCAACCGTTGTGGTGTCC	18	CTTCCAGAGCGCTGTCCC	18	NA	NA	NA	NA
Z1400	12	CCGCTGTACGCCTTACATG	19	AACCTGTAGAGTCCTCAGCCC	21	89		93			G41361
Z1473	12	CAACTGGAAGGGCACGAG	18	ACTAAACTGGACTAGTTTGCC	21	196	210	192			G41849
Z1778	12	AAGCTGGCGTGAAGAATATTGG	22	CAGGAGTTGATGCCAGCGGG	20	NA	NA	NA	NA
Z1804	12	TGCATGGCCGTGTTCGTAAC	20	TGCTCGACCTCTGAGCCTTT	20	NA	NA	NA	NA		G40143
Z3321	12	AATACGCAAACCGTGAGGAC	20	TGATCAGTGTCGTAAACCTTGA	22	NA	NA	NA	NA		G40334
Z3467	12	ACTGCGTCACCTGTATGCCTG	21	TCTGGGGACTGATTCACAGGTG	22	143		159	167		G41447
Z3690	12	AAGCCATTCCTTCCATTCTTCA	22	CCCCACAATTAAAGCTGACAGG	22	156		182			G41460
Z3801	12	GGTGCTTGTCACATTCCTGCA	21	AGGATGGATGTGAGCCTCTTGC	22	183		179	209		G41466
Z4147	12	TCAGTTTGGACTGAGGAGCGC	21	TCAGCACTACAGGGACAGCAGG	22	NA	NA	NA	NA	Use at your own risk	G40353
Z4188	12	GTAGTTGAATGCCGAATTGGCC	22	GAACACCTGCGCATCCACAG	20	207		203			G41483
Z4259	12	ACCACGCTTTTTGTGGACTCTG	22	AGGGGGGAGAGCATGCTAGG	20	NA	NA	NA	NA	Use at your own risk	G41491
Z4325	12	GAATCACGACTGGCCATCTGG	21	GGAGCCGTGGAGCCTACAGA	20	129		135	NA		G41505
Z4373	12	AGCTTTGAAATTAGAGCG	18	ATGAGTCAATGTTCTGCTC	19	NA	NA	NA	NA		G41511
Z4397	12	TTGAGGGGAAACAGAAGCAACC	22	TCACCCGATTTCCCTAACATCC	22	298		234			G41515
Z4499	12	AAAAGGAGCCATGTGGCAGC	20	ACGGCTTGACATGGCACTCA	20	NA	NA	NA	NA		G41519
Z4568	12	TCTCATTCAGACACTCCGGCC	21	CCCTTCAGCCGGCATAGAAA	20	NA	NA	NA	NA		G41523
Z4634	12	CGCAATACTGAAACACAGCAGC	22	AACGGGTCAGTTTCAGAGAGGC	22	NA	NA	NA	NA
Z4830	12	TGTTTCCTTTTGCCTGTATGG	21	TTTGGGGCAATAGGTGAAAG	20	162		176	288		G41540
Z4847	12	GTTGGCGGTTTATTCCGCTG	20	TGGTTCCCGCACATGACAGT	20	NA	NA	NA	NA		G41541
Z5179	12	CTGAGCTGATGCTGGAGCCG	20	CGTCCATTCGCAGAGCGGCT	20	NA	NA	NA	NA		G41559
Z6264	12	AACCACTCCATAAGCGTCTCA	21	ATTTAGAGGCACATCTTCAGCC	22	209		263	305		G40410
Z6442	12	CTCGTCGTCACGTAGCATGT	20	GTGAGAACATGGTCTGAGATGG	22	127		123	145		G41615
Z6691	12	AAGGTCAAAATTCTAAATTGACTGG	25	TGTGTAAGTGTTTGGCAGGG	20	145	157	143	159		G40461
Z6762	12	TCACAATCATTATCCGTGTGTG	22	GGAGTGGAGTTGCTGTCACA	20	148		206	?		G39603
Z6920	12	ATCAAGGTGAGTATGCAAAGGT	22	CAGCCCCGAATGTAATGC	18	224		200	228		G41133
Z7042	12	CTGCCCTCTAGAGGTGATGC	20	GCCGACAGCAATATCTGAATG	21	178		114	200		G40496
Z7135	12	ATGCCAGAACCCTCAACAAG	20	ATGCTGCTGTTTGTGTCAGG	20	231		197	259		G40508
Z7136	12	TGCTGAACTGTATACCTGATGCT	23	AACGTCACGCTGTTCATCTG	20	170		194			G40509
Z7328	12	AAAGACTCCTGTGTGTGTTCAGTT	24	TTTCCAGAGGTCAGGAAACG	20	195		141	351		G40541
Z7409	12	TGTATTCTGGACACTCGTCTGG	22	TCCTTAGCACATCTGCATGC	20	?	?	?
Z7576	12	AATGATGAAGGTCACCGCTC	20	TCCCTTTCCCACAGTCTGAC	20	188		124	176		G40575
Z7834	12	CAAACACTCTCTAGAGGAAGAACG	24	GCCCTGCACTCCCAATAAAT	20	281		217	245		G40598
Z8254	12	TGTTTGGTTTCATTCGTCGA	20	TGGTGTATTACAAACAGGAGCG	22	246		240	252		G40639
Z8344	12	GTCCCCAAACGGGATATAGG	20	TGTTTCTCCACTCCTCCTTCA	21	144	152	148	174
Z8377	12	TGTTGTCAGGTATGAATCTGCC	22	TGACAGGTTCTCTGTGGTGC	20	106		130			G41803
Z8450	12	GGCTGAATGATATCGCGAAT	20	ATTTTGTCAGCCAAACCCAG	20	197		231	281		G40649
Z8460	12	TGGTGGTGTGGAAAATTTCA	20	ATGACCAACCGTGAGGAAAG	20	224		188	254		G40652
Z8464	12	CCGCTGCATATATGAGGGTT	20	GTGCCAAAGGCAAATATTCG	20	NA	NA	NA	NA		G40653
Z8755	12	GCATTTCTGGTCCTTTGAGC	20	TGCTGTTTCACACTGTTGCA	20	83		117	123		G40684
Z8886	12	CTGCAGCCCTTGTCTAGACC	20	GGGTCTTTACACACTGGCAGA	21	94		106	116		G40703
Z8947	12	AAAGTGTCTCTCAGGATGCCA	21	GGCCTAATCACTCCTGTACTCAA	23	NA	NA	NA	NA		G40708
Z9021	12	TAAAGCAGGGATCCCATTTG	20	CCAGCTGGGACTTGAACCT	19	242		256	268		G41804
Z9061	12	GTCCCCAAAATGCTTCTTGA	20	TCATGCATGTTTAGGACGGA	20	370		300			G41171
Z9114	12	ACAACTCAGCGTATTTTAGCCC	22	GCCATGAGAACAGAGGAGGT	20	150		164			G40731
Z9172	12	TCCTCCGAGTGCTCTGATTT	20	GAAACACCCATACATCCTCACA	22	134		136	142		G41174
Z9251	12	CAAAGGGACTGAGCTGAAGG	20	GCCTCATTGATGAATATTCCTG	22	154		160	172		G40757
Z9416	12	GCTGATCCGATCATGTCCAT	20	AATTTGTGAAGCGGAAGGTG	20	NA	NA	NA	NA		G40969
Z9557	12	AGCTGTTCCAGAGCAGCATT	20	CCCCATGATTGACAGAAACC	20	?		?			G40809
Z9596	12	CAGCTGCTGATGTCCTCCTT	20	AGAAGCGCTGAAGCATGACT	20	?		?	?		G40816
Z9891	12	GCATGGTTGAATGCATTTGA	20	ATGCTGTTGTGCTCTGCATC	20	?		?			G40859
Z10122	12	AATTGTGGCACAACTGGACA	20	GCAGAGAATTAGCGGGTTTG	20	254		314			G39749
Z10225	12	CAATAGGAAGAGGAAGCCCC	20	CGCGATTATCATCAAGCATG	20	117		99			G41708
Z10352	12	TGGCTGACAGGAAACACAGA	20	TACCATCGCTGACAATCGAG	20	176		174			G39783
Z10364	12	TACGTGGGCGATGATGTAAA	20	GGCAGACCCCTCACTGTG	18	169		175	189		G39786
Z10445	12	TTCCGGACCCTGTCAGTG	18	CACCTGACCGGGAGAGATAA	20	182		142	158		G41696
Z10601	12	CCAGAATTCATCGTTCACTGTT	22	TGCACTGATCAGATGAACTGG	21	144		136	158		G39813
Z10684	12	AGATTTGCTTTGGCAGTGCT	20	ACAGCACTTCACAGCAGGTG	20	260		266	360		G39820
Z10806	12	GACGAGCCTCTGAGGAGGAT	20	ATTTACCCTCAGGCGCTTTT	20	239		205	213		G39832
Z11079	12	GTGGTCAGCATGGAGAGACC	20	TACTGCAGGGGTTGAGCTCT	20	232		210			G39866
Z11124	12	GACACTCGGGTGGGCTTATA	20	TGTTGGAGAGAGTGTGGCTG	20	149		147	157		G39873
Z11136	12	TGTTGATGCTTTCTCAACGG	20	GCCTGTGTTCTTGTTTTGAAAG	22	196	240	200	236		G41713
Z11518	12	GCACCGACAGACAGCTCAT	19	GAAAACACCAACACACGCTG	20	140		160	168		G39924
Z11521	12	TGCAGTTCATATGAGCAGGG	20	TTTGGCCCTTCAGAGTTGAG	20	253		207	237		G39925
Z11549	12	TCTTACCGGAGCAACTGCTT	20	TCGAAGTGACACAAAAGAGAGC	22	145		167	183		G39939
Z11611.1	12	AAAAACACAATGGCTCCGTC	20	CCTGAGAGGAGTCTGATGGC	20	197		149	299		G41749
Z11782	12	GAGAATCAGAGCCGCATTGT	20	AGACGCAAACCAAGAGCAGT	20	178		146			G39956
Z11903	12	TGATGGGTTGAGCACTGATT	20	GCTCTGGTCTGGTTCAGGAG	20	227		205	215		G39972
Z13218	12	TTGATGACGCTCTGATCCTG	20	TCTGCTGACCTTGTGGTCTG	20	237		215	247
Z13252	12	GTTGGGTGTAGGGGTAGGGT	20	TCCTCAAACACCAACAGAAGG	21	224		218	228		G41092
Z13276	12	GGGTGTTTTCCAGTGATGCA	20	GCACTGTTTGCTTGCAAAGA	20	159		169			G39999
Z13675	12	GGATCCTCCAGCTCTGCTAA	20	AGCGCTGATGCTGCATATAC	20	173		173	181		G40057
Z13938	12	GCACAGGAGACGCACAGTAA	20	GAGATCAGTGACATCGCCAG	20	?		?	?		G40092
Z20142	12	TTGGTGCACAGGAACTTCTG	20	ACTCCTCCAGCACCCACCTA	20	199	235	217	339		G40160
Z20406	12	CAATTAACACCGAGGCCTGT	20	TGTGCTGAAGCAGCAGAGAT	20	167		163	175		G40171
Z21271	12	TCCACAGGGCAATATGAAGA	20	CAGACAGAGGAGCAGCAGTG	20	216		194	202		G41741
Z21677	12	AACGTAAAGCCTGTTTTCGC	20	ACCTGCCACTTCAGCAGTTC	20	134		126	128		G40266
Z21911	12	ACCGAGACAGGGAGGATTTT	20	CTCCTCAGTTTTGTCCCAGC	20	207		219	287		G40278
Z22103	12	AGCTTTCAGAGGAGGATGCA	20	TGTTGCCATGAGAGGAATCA	20	186		176	262		G40291
Z22333	12	TGTTATTCTGCTGTCGCCTG	20	CTGCAGGTAGCCAGAGTTCC	20	193		181	187		G40312
Z22369	12	CTCTGCCATGAGATCATCCA	20	TTCAAAACCCTCTCCATTGC	20	170		164	178		G40315
Z22518	12	AGCAAACACCAATCGTTTCC	20	TGGAAGTGATCAATTGGCTG	20	206		204	216		G40325
Z22666	12	CATGGGGAGCAGAGAGAGAC	20	GAACCAGAATCCTCTGCTGC	20	NA	NA	NA	NA		G39507

Legend

Table generated Wed Oct 7 16:28:07 1998