Linkage Group 12 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z10457B |
12 |
ATATTTCTCCGGTGGTGACG |
20 |
GCCAAACACACACAGATTCG |
20 |
NA |
NA |
NA |
NA |
|
G41852 |
Z247 |
12 |
GATTTACCTGTTTCACAGCATCC |
23 |
CATCCTGAGATGTCATCTGATAGA |
24 |
NA |
NA |
NA |
NA |
|
|
Z937 |
12 |
AGAGCTAGCGCTGAGCTAACA |
21 |
TCTCTCTGTTCATCAGCAGCA |
21 |
NA |
NA |
NA |
NA |
|
G41429 |
Z1141 |
12 |
TCTGTCCTGTGCGCAGAG |
18 |
AGTTCCAGTGCAGACGGTG |
19 |
138 |
|
130 |
140 |
|
G41326 |
Z1146 |
12 |
ATGCCACCCCTCTCCTTC |
18 |
TGCCAACATGCTAACAATATCC |
22 |
144 |
|
138 |
142 |
|
G39915 |
Z1176 |
12 |
GAGGATTTAATCATCATTTGCTCC |
24 |
AAACACCACGATCAGCAGC |
19 |
NA |
NA |
NA |
NA |
|
G41333 |
Z1179 |
12 |
CAGGGAACCGTCACATTCAGC |
21 |
TCTGCAGACTCCCACTGACCC |
21 |
NA |
NA |
NA |
NA |
|
G41334 |
Z1225 |
12 |
CGAGCCGATAATGAATATACAGC |
23 |
CCACCGTGACACCCTTAATT |
20 |
NA |
NA |
NA |
NA |
|
G41343 |
Z1312 |
12 |
AGGACAACACCTGCAGCC |
18 |
TGGGATGAGCTGAAGTTCCT |
20 |
139 |
181 |
139 |
|
|
G39996 |
Z1358 |
12 |
TAATGACAGGCTGCACATCTG |
21 |
GGAGCAGGGTCTGAGGGT |
18 |
NA |
NA |
NA |
NA |
|
G41357 |
Z1365 |
12 |
GCAACCGTTGTGGTGTCC |
18 |
CTTCCAGAGCGCTGTCCC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1400 |
12 |
CCGCTGTACGCCTTACATG |
19 |
AACCTGTAGAGTCCTCAGCCC |
21 |
89 |
|
93 |
|
|
G41361 |
Z1473 |
12 |
CAACTGGAAGGGCACGAG |
18 |
ACTAAACTGGACTAGTTTGCC |
21 |
196 |
210 |
192 |
|
|
G41849 |
Z1778 |
12 |
AAGCTGGCGTGAAGAATATTGG |
22 |
CAGGAGTTGATGCCAGCGGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z1804 |
12 |
TGCATGGCCGTGTTCGTAAC |
20 |
TGCTCGACCTCTGAGCCTTT |
20 |
NA |
NA |
NA |
NA |
|
G40143 |
Z3321 |
12 |
AATACGCAAACCGTGAGGAC |
20 |
TGATCAGTGTCGTAAACCTTGA |
22 |
NA |
NA |
NA |
NA |
|
G40334 |
Z3467 |
12 |
ACTGCGTCACCTGTATGCCTG |
21 |
TCTGGGGACTGATTCACAGGTG |
22 |
143 |
|
159 |
167 |
|
G41447 |
Z3690 |
12 |
AAGCCATTCCTTCCATTCTTCA |
22 |
CCCCACAATTAAAGCTGACAGG |
22 |
156 |
|
182 |
|
|
G41460 |
Z3801 |
12 |
GGTGCTTGTCACATTCCTGCA |
21 |
AGGATGGATGTGAGCCTCTTGC |
22 |
183 |
|
179 |
209 |
|
G41466 |
Z4147 |
12 |
TCAGTTTGGACTGAGGAGCGC |
21 |
TCAGCACTACAGGGACAGCAGG |
22 |
NA |
NA |
NA |
NA |
Use at your |
G40353 |
Z4188 |
12 |
GTAGTTGAATGCCGAATTGGCC |
22 |
GAACACCTGCGCATCCACAG |
20 |
207 |
|
203 |
|
|
G41483 |
Z4259 |
12 |
ACCACGCTTTTTGTGGACTCTG |
22 |
AGGGGGGAGAGCATGCTAGG |
20 |
NA |
NA |
NA |
NA |
Use at your |
G41491 |
Z4325 |
12 |
GAATCACGACTGGCCATCTGG |
21 |
GGAGCCGTGGAGCCTACAGA |
20 |
129 |
|
135 |
NA |
|
G41505 |
Z4373 |
12 |
AGCTTTGAAATTAGAGCG |
18 |
ATGAGTCAATGTTCTGCTC |
19 |
NA |
NA |
NA |
NA |
|
G41511 |
Z4397 |
12 |
TTGAGGGGAAACAGAAGCAACC |
22 |
TCACCCGATTTCCCTAACATCC |
22 |
298 |
|
234 |
|
|
G41515 |
Z4499 |
12 |
AAAAGGAGCCATGTGGCAGC |
20 |
ACGGCTTGACATGGCACTCA |
20 |
NA |
NA |
NA |
NA |
|
G41519 |
Z4568 |
12 |
TCTCATTCAGACACTCCGGCC |
21 |
CCCTTCAGCCGGCATAGAAA |
20 |
NA |
NA |
NA |
NA |
|
G41523 |
Z4634 |
12 |
CGCAATACTGAAACACAGCAGC |
22 |
AACGGGTCAGTTTCAGAGAGGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4830 |
12 |
TGTTTCCTTTTGCCTGTATGG |
21 |
TTTGGGGCAATAGGTGAAAG |
20 |
162 |
|
176 |
288 |
|
G41540 |
Z4847 |
12 |
GTTGGCGGTTTATTCCGCTG |
20 |
TGGTTCCCGCACATGACAGT |
20 |
NA |
NA |
NA |
NA |
|
G41541 |
Z5179 |
12 |
CTGAGCTGATGCTGGAGCCG |
20 |
CGTCCATTCGCAGAGCGGCT |
20 |
NA |
NA |
NA |
NA |
|
G41559 |
Z6264 |
12 |
AACCACTCCATAAGCGTCTCA |
21 |
ATTTAGAGGCACATCTTCAGCC |
22 |
209 |
|
263 |
305 |
|
G40410 |
Z6442 |
12 |
CTCGTCGTCACGTAGCATGT |
20 |
GTGAGAACATGGTCTGAGATGG |
22 |
127 |
|
123 |
145 |
|
G41615 |
Z6691 |
12 |
AAGGTCAAAATTCTAAATTGACTGG |
25 |
TGTGTAAGTGTTTGGCAGGG |
20 |
145 |
157 |
143 |
159 |
|
G40461 |
Z6762 |
12 |
TCACAATCATTATCCGTGTGTG |
22 |
GGAGTGGAGTTGCTGTCACA |
20 |
148 |
|
206 |
? |
|
G39603 |
Z6920 |
12 |
ATCAAGGTGAGTATGCAAAGGT |
22 |
CAGCCCCGAATGTAATGC |
18 |
224 |
|
200 |
228 |
|
G41133 |
Z7042 |
12 |
CTGCCCTCTAGAGGTGATGC |
20 |
GCCGACAGCAATATCTGAATG |
21 |
178 |
|
114 |
200 |
|
G40496 |
Z7135 |
12 |
ATGCCAGAACCCTCAACAAG |
20 |
ATGCTGCTGTTTGTGTCAGG |
20 |
231 |
|
197 |
259 |
|
G40508 |
Z7136 |
12 |
TGCTGAACTGTATACCTGATGCT |
23 |
AACGTCACGCTGTTCATCTG |
20 |
170 |
|
194 |
|
|
G40509 |
Z7328 |
12 |
AAAGACTCCTGTGTGTGTTCAGTT |
24 |
TTTCCAGAGGTCAGGAAACG |
20 |
195 |
|
141 |
351 |
|
G40541 |
Z7409 |
12 |
TGTATTCTGGACACTCGTCTGG |
22 |
TCCTTAGCACATCTGCATGC |
20 |
? |
? |
? |
|
|
|
Z7576 |
12 |
AATGATGAAGGTCACCGCTC |
20 |
TCCCTTTCCCACAGTCTGAC |
20 |
188 |
|
124 |
176 |
|
G40575 |
Z7834 |
12 |
CAAACACTCTCTAGAGGAAGAACG |
24 |
GCCCTGCACTCCCAATAAAT |
20 |
281 |
|
217 |
245 |
|
G40598 |
Z8254 |
12 |
TGTTTGGTTTCATTCGTCGA |
20 |
TGGTGTATTACAAACAGGAGCG |
22 |
246 |
|
240 |
252 |
|
G40639 |
Z8344 |
12 |
GTCCCCAAACGGGATATAGG |
20 |
TGTTTCTCCACTCCTCCTTCA |
21 |
144 |
152 |
148 |
174 |
|
|
Z8377 |
12 |
TGTTGTCAGGTATGAATCTGCC |
22 |
TGACAGGTTCTCTGTGGTGC |
20 |
106 |
|
130 |
|
|
G41803 |
Z8450 |
12 |
GGCTGAATGATATCGCGAAT |
20 |
ATTTTGTCAGCCAAACCCAG |
20 |
197 |
|
231 |
281 |
|
G40649 |
Z8460 |
12 |
TGGTGGTGTGGAAAATTTCA |
20 |
ATGACCAACCGTGAGGAAAG |
20 |
224 |
|
188 |
254 |
|
G40652 |
Z8464 |
12 |
CCGCTGCATATATGAGGGTT |
20 |
GTGCCAAAGGCAAATATTCG |
20 |
NA |
NA |
NA |
NA |
|
G40653 |
Z8755 |
12 |
GCATTTCTGGTCCTTTGAGC |
20 |
TGCTGTTTCACACTGTTGCA |
20 |
83 |
|
117 |
123 |
|
G40684 |
Z8886 |
12 |
CTGCAGCCCTTGTCTAGACC |
20 |
GGGTCTTTACACACTGGCAGA |
21 |
94 |
|
106 |
116 |
|
G40703 |
Z8947 |
12 |
AAAGTGTCTCTCAGGATGCCA |
21 |
GGCCTAATCACTCCTGTACTCAA |
23 |
NA |
NA |
NA |
NA |
|
G40708 |
Z9021 |
12 |
TAAAGCAGGGATCCCATTTG |
20 |
CCAGCTGGGACTTGAACCT |
19 |
242 |
|
256 |
268 |
|
G41804 |
Z9061 |
12 |
GTCCCCAAAATGCTTCTTGA |
20 |
TCATGCATGTTTAGGACGGA |
20 |
370 |
|
300 |
|
|
G41171 |
Z9114 |
12 |
ACAACTCAGCGTATTTTAGCCC |
22 |
GCCATGAGAACAGAGGAGGT |
20 |
150 |
|
164 |
|
|
G40731 |
Z9172 |
12 |
TCCTCCGAGTGCTCTGATTT |
20 |
GAAACACCCATACATCCTCACA |
22 |
134 |
|
136 |
142 |
|
G41174 |
Z9251 |
12 |
CAAAGGGACTGAGCTGAAGG |
20 |
GCCTCATTGATGAATATTCCTG |
22 |
154 |
|
160 |
172 |
|
G40757 |
Z9416 |
12 |
GCTGATCCGATCATGTCCAT |
20 |
AATTTGTGAAGCGGAAGGTG |
20 |
NA |
NA |
NA |
NA |
|
G40969 |
Z9557 |
12 |
AGCTGTTCCAGAGCAGCATT |
20 |
CCCCATGATTGACAGAAACC |
20 |
? |
|
? |
|
|
G40809 |
Z9596 |
12 |
CAGCTGCTGATGTCCTCCTT |
20 |
AGAAGCGCTGAAGCATGACT |
20 |
? |
|
? |
? |
|
G40816 |
Z9891 |
12 |
GCATGGTTGAATGCATTTGA |
20 |
ATGCTGTTGTGCTCTGCATC |
20 |
? |
|
? |
|
|
G40859 |
Z10122 |
12 |
AATTGTGGCACAACTGGACA |
20 |
GCAGAGAATTAGCGGGTTTG |
20 |
254 |
|
314 |
|
|
G39749 |
Z10225 |
12 |
CAATAGGAAGAGGAAGCCCC |
20 |
CGCGATTATCATCAAGCATG |
20 |
117 |
|
99 |
|
|
G41708 |
Z10352 |
12 |
TGGCTGACAGGAAACACAGA |
20 |
TACCATCGCTGACAATCGAG |
20 |
176 |
|
174 |
|
|
G39783 |
Z10364 |
12 |
TACGTGGGCGATGATGTAAA |
20 |
GGCAGACCCCTCACTGTG |
18 |
169 |
|
175 |
189 |
|
G39786 |
Z10445 |
12 |
TTCCGGACCCTGTCAGTG |
18 |
CACCTGACCGGGAGAGATAA |
20 |
182 |
|
142 |
158 |
|
G41696 |
Z10601 |
12 |
CCAGAATTCATCGTTCACTGTT |
22 |
TGCACTGATCAGATGAACTGG |
21 |
144 |
|
136 |
158 |
|
G39813 |
Z10684 |
12 |
AGATTTGCTTTGGCAGTGCT |
20 |
ACAGCACTTCACAGCAGGTG |
20 |
260 |
|
266 |
360 |
|
G39820 |
Z10806 |
12 |
GACGAGCCTCTGAGGAGGAT |
20 |
ATTTACCCTCAGGCGCTTTT |
20 |
239 |
|
205 |
213 |
|
G39832 |
Z11079 |
12 |
GTGGTCAGCATGGAGAGACC |
20 |
TACTGCAGGGGTTGAGCTCT |
20 |
232 |
|
210 |
|
|
G39866 |
Z11124 |
12 |
GACACTCGGGTGGGCTTATA |
20 |
TGTTGGAGAGAGTGTGGCTG |
20 |
149 |
|
147 |
157 |
|
G39873 |
Z11136 |
12 |
TGTTGATGCTTTCTCAACGG |
20 |
GCCTGTGTTCTTGTTTTGAAAG |
22 |
196 |
240 |
200 |
236 |
|
G41713 |
Z11518 |
12 |
GCACCGACAGACAGCTCAT |
19 |
GAAAACACCAACACACGCTG |
20 |
140 |
|
160 |
168 |
|
G39924 |
Z11521 |
12 |
TGCAGTTCATATGAGCAGGG |
20 |
TTTGGCCCTTCAGAGTTGAG |
20 |
253 |
|
207 |
237 |
|
G39925 |
Z11549 |
12 |
TCTTACCGGAGCAACTGCTT |
20 |
TCGAAGTGACACAAAAGAGAGC |
22 |
145 |
|
167 |
183 |
|
G39939 |
Z11611.1 |
12 |
AAAAACACAATGGCTCCGTC |
20 |
CCTGAGAGGAGTCTGATGGC |
20 |
197 |
|
149 |
299 |
|
G41749 |
Z11782 |
12 |
GAGAATCAGAGCCGCATTGT |
20 |
AGACGCAAACCAAGAGCAGT |
20 |
178 |
|
146 |
|
|
G39956 |
Z11903 |
12 |
TGATGGGTTGAGCACTGATT |
20 |
GCTCTGGTCTGGTTCAGGAG |
20 |
227 |
|
205 |
215 |
|
G39972 |
Z13218 |
12 |
TTGATGACGCTCTGATCCTG |
20 |
TCTGCTGACCTTGTGGTCTG |
20 |
237 |
|
215 |
247 |
|
|
Z13252 |
12 |
GTTGGGTGTAGGGGTAGGGT |
20 |
TCCTCAAACACCAACAGAAGG |
21 |
224 |
|
218 |
228 |
|
G41092 |
Z13276 |
12 |
GGGTGTTTTCCAGTGATGCA |
20 |
GCACTGTTTGCTTGCAAAGA |
20 |
159 |
|
169 |
|
|
G39999 |
Z13675 |
12 |
GGATCCTCCAGCTCTGCTAA |
20 |
AGCGCTGATGCTGCATATAC |
20 |
173 |
|
173 |
181 |
|
G40057 |
Z13938 |
12 |
GCACAGGAGACGCACAGTAA |
20 |
GAGATCAGTGACATCGCCAG |
20 |
? |
|
? |
? |
|
G40092 |
Z20142 |
12 |
TTGGTGCACAGGAACTTCTG |
20 |
ACTCCTCCAGCACCCACCTA |
20 |
199 |
235 |
217 |
339 |
|
G40160 |
Z20406 |
12 |
CAATTAACACCGAGGCCTGT |
20 |
TGTGCTGAAGCAGCAGAGAT |
20 |
167 |
|
163 |
175 |
|
G40171 |
Z21271 |
12 |
TCCACAGGGCAATATGAAGA |
20 |
CAGACAGAGGAGCAGCAGTG |
20 |
216 |
|
194 |
202 |
|
G41741 |
Z21677 |
12 |
AACGTAAAGCCTGTTTTCGC |
20 |
ACCTGCCACTTCAGCAGTTC |
20 |
134 |
|
126 |
128 |
|
G40266 |
Z21911 |
12 |
ACCGAGACAGGGAGGATTTT |
20 |
CTCCTCAGTTTTGTCCCAGC |
20 |
207 |
|
219 |
287 |
|
G40278 |
Z22103 |
12 |
AGCTTTCAGAGGAGGATGCA |
20 |
TGTTGCCATGAGAGGAATCA |
20 |
186 |
|
176 |
262 |
|
G40291 |
Z22333 |
12 |
TGTTATTCTGCTGTCGCCTG |
20 |
CTGCAGGTAGCCAGAGTTCC |
20 |
193 |
|
181 |
187 |
|
G40312 |
Z22369 |
12 |
CTCTGCCATGAGATCATCCA |
20 |
TTCAAAACCCTCTCCATTGC |
20 |
170 |
|
164 |
178 |
|
G40315 |
Z22518 |
12 |
AGCAAACACCAATCGTTTCC |
20 |
TGGAAGTGATCAATTGGCTG |
20 |
206 |
|
204 |
216 |
|
G40325 |
Z22666 |
12 |
CATGGGGAGCAGAGAGAGAC |
20 |
GAACCAGAATCCTCTGCTGC |
20 |
NA |
NA |
NA |
NA |
|
G39507 |
Legend
Table generated Wed Oct 7 16:28:07 1998
