Linkage Group 01 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker Number |
Linkage Group |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 Size |
AB_2 Size |
In_1 Size |
In_2 Size |
Comments |
dbSTS Accession |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z164 |
1 |
TTGCTGTGTGTGTTTCTCAGTG |
22 |
TGTTCCATCGCTGAGAAGTG |
20 |
NA |
NA |
NA |
NA |
|
|
Z450 |
1 |
AAGTACAGCATTGTCCACAGTCA |
23 |
CAGGGAAACTGCTGATGTTG |
20 |
148 |
|
132 |
170 |
|
|
Z728 |
1 |
GTGGTCATGTGACACAGGATG |
21 |
GCTCTTACAGTCCTGAGAACAGC |
23 |
204 |
|
202 |
|
|
|
Z1142 |
1 |
CTTCACAGATTATATCCTACAA |
22 |
GTTTAGCGGCTTTTGCATCTG |
21 |
NA |
NA |
NA |
NA |
|
|
Z1154 |
1 |
TCATGATTGTTTGGAATGTAATAGTG |
26 |
TTGAGCGGTAGTCTTCTACGC |
21 |
130 |
|
138 |
202 |
|
|
Z1173 |
1 |
CAACAGTGATCACACCGACC |
20 |
CTGCCCTTCTCTGAATCAGG |
20 |
105 |
|
107 |
115 |
|
|
Z1351 |
1 |
GGTTAGTGATCAGTTAAGCAATTAGTG |
27 |
CTTTCTGAAACAGGGCCAAG |
20 |
138 |
164 |
222 |
|
|
|
Z1368 |
1 |
TTCTGCATGTGCGAGCAT |
18 |
AGCTGCATCTTGTGTCTAGCTG |
22 |
99 |
103 |
97 |
|
|
|
Z1463 |
1 |
GTGAGGTCATCCAAATAAATCTCC |
24 |
GCATTCAACCCCTGCATC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1705 |
1 |
CCACAGCGGACACTTTGAACC |
21 |
CAAGGTTTACCACGGGACTGA |
21 |
NA |
NA |
NA |
NA |
|
|
Z1781 |
1 |
GCTCTGGCAGATTCCAAATTCC |
22 |
AAGGGTCAGCTGCAGGGGT |
19 |
NA |
NA |
NA |
NA |
|
|
Z1986 |
1 |
GCTGCAGCGCTGGTCACCAT |
20 |
GCTGTGGCGACCCTGGATTA |
20 |
NA |
NA |
NA |
NA |
|
|
Z3099 |
1 |
TTCTCCCGGAGTTTACATGCTG |
22 |
TTTGGTTCCTGTCAGATGCCA |
21 |
NA |
NA |
NA |
NA |
|
|
Z3417 |
1 |
TGAAAATAGGGTGCGTCTCCTT |
22 |
GCGCACATCCATTTCTCGTG |
20 |
134 |
|
116 |
132 |
|
|
Z3705 |
1 |
TTGTGATTTTTGGGCTTAGGGG |
22 |
TGTGCACCGTACTGTTTTTGGA |
22 |
NA |
NA |
NA |
NA |
|
|
Z3766 |
1 |
ACGCCTGCATCTGATGGTCA |
20 |
TCCATGCACAAAATCTCTTGCA |
22 |
168 |
|
174 |
|
|
|
Z3837 |
1 |
TGACTGCTGGAGCACAGATGC |
21 |
GCATTTCTGAACAGCCCTCC |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z3953 |
1 |
ATGCACATTACAACCTCGAGG |
21 |
ATGTGTTCGCTATTTCCATGC |
21 |
NA |
NA |
NA |
NA |
|
|
Z4593 |
1 |
GCGGTCAGTTGTTGATCAGTGC |
22 |
CGTGCATGAAGCGGAAGATG |
20 |
NA |
NA |
NA |
NA |
|
|
Z4764 |
1 |
CCCCTAACTGTTGACCGGTA |
20 |
AAGAGTGAGTCTGGGTCTCCTG |
22 |
NA |
NA |
NA |
NA |
|
|
Z5024 |
1 |
TGCCGTTCAGGGACTTCAAA |
20 |
ATCTGGTGGCTGCCAAATAACA |
22 |
150 |
|
244 |
|
|
|
Z5058 |
1 |
CTGACGAGAACGGTGAACATGC |
22 |
GCTCAGGGTTTGGAGGATGTG |
21 |
18 |
|
177 |
195 |
|
|
Z5370 |
1 |
GCCATCCAGAGCCAGAGATACA |
22 |
ATACTGACCAGCGGGAAACTCC |
22 |
NA |
NA |
NA |
NA |
|
|
Z5500 |
1 |
TTTTGTGGATGTCCTCGGCC |
20 |
ACTCGCCTGCATGAAGCAGA |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5508 |
1 |
TAGCGTGCCATGCGTTTTTG |
20 |
GATGTTCCTGCCTTATCGGCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z6177 |
1 |
ATCACTGCAGGAGGCACAG |
19 |
TATGGCCCACGATAATCAAT |
20 |
163 |
|
157 |
|
|
|
Z6223 |
1 |
TCAGGTGACTGACAGCAAAG |
20 |
TGGTGAACATGGTCCCATC |
19 |
207 |
|
219 |
231 |
|
|
Z6283 |
1 |
TCAACACGCTTTATAGGGGG |
20 |
TTGTGACGCCTCTGACTGTC |
20 |
NA |
NA |
NA |
NA |
|
|
Z6368 |
1 |
TGTCCTATAGCCTCGCACG |
19 |
CCGTGATCAATCATCTGCAC |
20 |
188 |
|
154 |
|
|
|
Z6384 |
1 |
GTGCTTCCTCCTCAGTGTTTG |
21 |
CGGTCGCTGATCTGATGTTA |
20 |
152 |
|
124 |
140 |
|
|
Z6403 |
1 |
TGCTCAAGGACTGATTTTATGG |
22 |
TGGTTGATACAGGTGGCAGA |
20 |
236 |
|
230 |
284 |
|
|
Z6411 |
1 |
TGAGAACACATTGCTACGACG |
21 |
ACCCCCAGAGGCATAACAG |
19 |
274 |
|
258 |
290 |
|
|
Z6415 |
1 |
TTGTTAGATCACCCTGTTGTCG |
22 |
CAGACGGTTAAAAGCCAAGC |
20 |
187 |
|
241 |
339 |
|
|
Z6416 |
1 |
TCCCACTTCCTCCTGCAG |
18 |
TTTGATCTGTTCATCCTGATGC |
22 |
137 |
|
167 |
|
|
|
Z6422 |
1 |
GCATGGTCATGATGGCTTC |
19 |
GGTATCCAGCATGTGACAGTG |
21 |
165 |
|
163 |
175 |
|
|
Z6592 |
1 |
CTGTTTTACACACGTGGCTCA |
21 |
TCTATCTAACACACGGCAGGG |
21 |
173 |
|
143 |
159 |
|
|
Z6643 |
1 |
GCACAGTTGTCAATGTTGTGG |
21 |
CTCAACACAGCGTAAACGTCA |
21 |
221 |
? |
211 |
|
|
|
Z6775 |
1 |
AGCGTATGGAGCGGTGAG |
18 |
CAGTTCACCCATGACCGTC |
19 |
217 |
|
273 |
311 |
|
|
Z6776 |
1 |
GCCAAAGAGAGGCTCATCAC |
20 |
TCTGGCAGATTCCAAATTCC |
20 |
117 |
|
115 |
119 |
|
|
Z6802 |
1 |
AGACTGAAGTGCACTGTTGTCC |
22 |
CTCCGACGCGATCATATTAA |
20 |
233 |
|
241 |
|
|
|
Z6911 |
1 |
TGTGACGGGAACAAGTGAGA |
20 |
GTTTATGGCCATGCACGAG |
19 |
? |
|
? |
n |
|
|
Z6974 |
1 |
AGAACTGGTTCAAGTCAGAGCC |
22 |
TTTAGGGGCCCAGTAGTGTG |
20 |
? |
|
? |
? |
|
|
Z7141 |
1 |
TGGAGTCTAATGACTGCTTGTG |
22 |
TGGCCATCTTTGTTTTGACA |
20 |
235 |
|
183 |
219 |
|
|
Z7287 |
1 |
TAATTGAGCCTCACCCGC |
18 |
TGTGACAATACACTCGCTGATG |
22 |
227 |
|
235 |
243 |
|
|
Z7353 |
1 |
GGTGGAGCGGTGATTTATGT |
20 |
TTCTGTGGAAGAGTGTTGACTGA |
23 |
193 |
|
235 |
|
|
|
Z7476 |
1 |
TGGAGAACAAGGCAAGCC |
18 |
ATTCCAATGTCTTTTTAAGCGA |
22 |
139 |
|
137 |
141 |
|
|
Z7573 |
1 |
TGTTGCACCATATTGTGGCT |
20 |
TCCTGGCGATGAAAGAGC |
18 |
204 |
|
198 |
210 |
|
|
Z7928 |
1 |
TTGTTCCTCCAGACATTCCC |
20 |
ATACACGCTGACCAAATGCA |
20 |
269 |
|
201 |
n |
|
|
Z8613 |
1 |
CATGTGAACCACTCGTAACCA |
21 |
AAGACATGATTACCCGCTGG |
20 |
120 |
|
136 |
|
|
|
Z8678 |
1 |
TGAACAAATGGTCGCATGTT |
20 |
ACTTTTCCATCTGCTGCTCC |
20 |
205 |
|
201 |
203 |
|
|
Z8718 |
1 |
ACATGAGCAGTTGGAGTGCA |
20 |
CTGAAGGACAAAGCCCAGAC |
20 |
164 |
|
156 |
158 |
|
|
Z8874 |
1 |
TGTGTCATCTGCTTTTGTCTGA |
22 |
ACTGCTGTGAAGTCCACACG |
20 |
97 |
|
99 |
|
|
|
Z9042 |
1 |
TGGAGCAGGAATTTAATGCC |
20 |
TCTCCTGATACAGGGCTGCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z9125 |
1 |
CCCCACATCCTAACAGGAGA |
20 |
GTCGTTCAGATGAGAGCTTTTG |
22 |
168 |
|
186 |
206 |
|
|
Z9158 |
1 |
TAGATCTCTCGCTCCACCGT |
20 |
TGCCGCATGACTGTACTGTA |
20 |
238 |
256 |
228 |
244 |
|
|
Z9217 |
1 |
GCCCAGCCCTCTGTACATTA |
20 |
AGGAGAATCGCCATTTCTTG |
20 |
143 |
165 |
157 |
163 |
|
|
Z9250 |
1 |
TTCTTTCCAAACTGCAACCC |
20 |
GCGAGAGACCCAGATCTATCC |
21 |
211 |
|
209 |
215 |
|
|
Z9294 |
1 |
TAGTGCACACCAAAAGGCTG |
20 |
ATCCATGTTTACAGCCTTGAGA |
22 |
123 |
|
127 |
133 |
|
|
Z9367 |
1 |
CTGAGGTCGGTTATTTAGGCC |
21 |
CATTGCTTTGCCCTCAGAAT |
20 |
150 |
|
144 |
146 |
|
|
Z9382 |
1 |
GTAAGTGTGTGTGCGCACCT |
20 |
TCTGACTACTGAACCATCAGCG |
22 |
138 |
146 |
154 |
|
|
|
Z9394 |
1 |
GGCCTCACACAATTTCAAAT |
20 |
GAGACGAGCAGAAGTCCCTG |
20 |
237 |
277 |
245 |
273 |
|
|
Z9395 |
1 |
ACGATGGTGTAGAACCACTGC |
21 |
TCACCCTCCTACCTGTCCAC |
20 |
258 |
|
262 |
264 |
|
|
Z9409 |
1 |
CACAGACACTGAGGACGTTCA |
21 |
CGTATTAACACGGATGTGCG |
20 |
184 |
|
180 |
202 |
|
|
Z9704 |
1 |
CACGATGGCACAAAAATCTG |
20 |
AAATCTTGGATGCGTATCGG |
20 |
? |
|
? |
? |
|
|
Z9791 |
1 |
TCAGAAAGGTCAGGGGTCAG |
20 |
AGAAGAGCGTCTGTCGGTGT |
20 |
279 |
|
215 |
221 |
|
|
Z9886 |
1 |
GCTCCAGATACGCGCAAC |
18 |
CCATTGTTGCAGAACCAGG |
19 |
? |
|
? |
? |
|
|
Z9958 |
1 |
ACTGGGCTGCCAGGTACA |
18 |
GCAGTACACTCTGTCTGTCCG |
21 |
237 |
|
191 |
259 |
|
|
Z9977 |
1 |
AGTGTATGGCTATGCCCCAG |
20 |
TTGTCAGAGGACTCTGGGCT |
20 |
197 |
|
189 |
199 |
|
|
Z10124 |
1 |
GCCAGGAAACTTGCTCTCAA |
20 |
GTGGCAGTCATCAACTGCAG |
20 |
181 |
|
183 |
209 |
|
|
Z10155 |
1 |
TGACCCACTACCCTTTCTGG |
20 |
CCCTGGCTGTCACCTTAGAG |
20 |
155 |
|
141 |
149 |
|
|
Z10175 |
1 |
GCATTTCGTCAAGGTCATGA |
20 |
CACAGCCAGTGAATGCTGAC |
20 |
221 |
|
205 |
211 |
|
|
Z10194 |
1 |
TTGCAGAAATTTCCACTCCC |
20 |
GCAAGAGAGCAGCTCAGGTAA |
21 |
206 |
|
146 |
160 |
|
|
Z10246 |
1 |
ACCCTCAGCACCTCAGAGAA |
20 |
AATGTTGAATTCCGGCTGAC |
20 |
132 |
|
150 |
|
|
|
Z10258 |
1 |
CACACTGTAACCTGAGCCCA |
20 |
GAACTCTGGTTCAAGGCAGC |
20 |
251 |
|
259 |
265 |
|
|
Z10315 |
1 |
TGTGCACTAACACACGCAGA |
20 |
TGATCAACTCTCACTTGAGTTTG |
23 |
255 |
|
179 |
|
|
|
Z10340 |
1 |
CTGCACACGGTGTGTAAACC |
20 |
GTAATTGATTGGCGCGATTT |
20 |
218 |
|
284 |
|
|
|
Z10551 |
1 |
ACACCAGAGAGCGTGTGATG |
20 |
AGCAGGAACCGTCAGCTTTA |
20 |
223 |
257 |
219 |
237 |
|
|
Z10888 |
1 |
CAAAGGCTTTGGATTTGGAA |
20 |
TGTTATCCCAGGAGCCAGTC |
20 |
242 |
270 |
212 |
230 |
|
|
Z10978 |
1 |
AAGAGTGAAAGCAGCGGAAA |
20 |
AAGTCCCTCTCAGCAGTGGA |
20 |
196 |
|
166 |
176 |
|
|
Z11154 |
1 |
GATCGGGATTTCAAAGCAGA |
20 |
GAGCGAAACGAAAGAAGTGC |
20 |
258 |
|
262 |
|
|
|
Z11266 |
1 |
CAGAGCGGGAGTCTATCCTG |
20 |
CTTGGTGTGTCCTGACCCTT |
20 |
134 |
|
102 |
106 |
|
|
Z11369 |
1 |
GGGTAATATTGCACTTAGCCAGA |
23 |
AACAAAAACCGTCTTGCCAC |
20 |
261 |
|
229 |
271 |
|
|
Z11464 |
1 |
CGAGCATGAGGACAAAAGTG |
20 |
TCCATGTGCTGTGACCAAGT |
20 |
198 |
210 |
192 |
216 |
|
|
Z11618 |
1 |
TGAGTGGGTGTAGAGGGACA |
20 |
GATAAGGGGCCTCTTGGTTC |
20 |
111 |
|
95 |
109 |
|
|
Z11748 |
1 |
GGCTTTTTGGGTTTTAATCCA |
21 |
GGGAAATCCTGGAGGGTCTA |
20 |
? |
|
? |
? |
|
|
Z11859 |
1 |
TTTCATCTGTTTGCAGGTGC |
20 |
GACCCCAGCAATGTTGAGAT |
20 |
194 |
|
198 |
250 |
|
|
Z11913 |
1 |
TGGAGTAACTGCAGCAGTCG |
20 |
TCGAATCAGAGTGTGAAGCG |
20 |
? |
|
? |
|
|
|
Z13296 |
1 |
TCTGAGTGCACCAAATGAGTG |
21 |
AGTTGGGTCAAACCCATGTC |
20 |
88 |
90 |
76 |
|
|
|
Z13333 |
1 |
CTGCTGTCTGTCACAGAGCC |
20 |
ATGACCAAACACAGGTTCCC |
20 |
248 |
|
258 |
|
|
|
Z13452 |
1 |
CTCTGCCAGGTGCTTTTCTC |
20 |
GTGTTGTCAGCTGACCCTCA |
20 |
220 |
|
224 |
n |
|
|
Z13615 |
1 |
TCCGTCTCCACCTCTATTTCA |
21 |
CCACAGGTGGTGTCACACTC |
20 |
153 |
|
139 |
151 |
|
|
Z13724 |
1 |
AGCGCATGGTGAAATAGGTC |
20 |
TGACACCTCCATACCAGCTG |
20 |
152 |
|
176 |
238 |
|
|
Z14078 |
1 |
AAATGGCTCCATCACTGCTC |
20 |
CCAAGACTTGGAGACCTTGA |
20 |
? |
|
? |
? |
|
|
Z20062 |
1 |
GCTTTAGAGAGCTCAGCGGA |
20 |
CACACACATTTTCACGACCC |
20 |
208 |
|
222 |
238 |
|
|
Z20950 |
1 |
GGGTATTGGAAGTTGCGAAA |
20 |
TTTCCAAACACACTTGTGCG |
20 |
107 |
159 |
105 |
|
|
|
Z21260 |
1 |
GCCAGATGACCATCTCAGCT |
20 |
TGCAGTGCTCATAGGACCTG |
20 |
244 |
|
224 |
|
|
|
Z21375 |
1 |
GAGTCTCCACCTCACGCTTC |
20 |
ACCACAGGTGAATGCCACA |
19 |
200 |
|
198 |
208 |
|
|
Z21408 |
1 |
AGAGGAAGTCAACAGTACATGCA |
23 |
AGTCCACGGATGTCCTGTTT |
20 |
299 |
399 |
269 |
319 |
|
|
Z21548 |
1 |
CCACTCTACCCTCCTCTTGAA |
21 |
ACCCTAGCAAGGCTGGAGAT |
20 |
244 |
|
246 |
|
|
|
Z21576 |
1 |
GCTGCTCTAAACAGACGTGCT |
21 |
GCCGCTTACCTCGTTTATTG |
20 |
NA |
NA |
NA |
NA |
|
|
Z21746 |
1 |
ATCAGAGTTACCATTGGCCC |
20 |
GCTGCTCATCTGCTGCTGTA |
20 |
121 |
|
123 |
125 |
|
|
Z22168 |
1 |
GGACCTGAAAGAGAACAGCG |
20 |
GTGTGCGGATTACCGAGTTT |
20 |
299 |
|
277 |
|
|
|
Z22319 |
1 |
CGGACTAATAAGCGCTTTCG |
20 |
CACCTGCCTCTCTCACACAA |
20 |
244 |
|
232 |
264 |
|
|
Z22347 |
1 |
GAGCAGCAGAGAGCAGGAGT |
20 |
TTGGTGTTTGCTGTCCTCTG |
20 |
148 |
|
128 |
130 |
|
|
Z22526 |
1 |
TCTCCCTCAGGGTTCTGATG |
20 |
GCTTACCTGCTGTCCTGGAG |
20 |
225 |
|
213 |
|
|
|
Z22709 |
1 |
ATTTCAGACCTGTGGGAAGC |
20 |
AACCACCAGCCTCTGAGAGA |
20 |
NA |
NA |
NA |
NA |
|
|
Z22986 |
1 |
TAAGGGCGGATGGTAGTTTG |
20 |
CATAACAGCAGCCCAACAGA |
20 |
NA |
NA |
NA |
NA |
|
|
Z23059 |
1 |
AAGGCAGGTAAAAATGCCCT |
20 |
CAGTGGGTGGAAAAAGGAAA |
20 |
NA |
NA |
NA |
NA |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
