Linkage Group 13 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z28 | 13 | TCTGGTGGACTCGCTGAAG | 19 | AAGTAAGCGCCACCAGAGTG | 20 | 141 |
| 121 |
|
|
|
Z818 | 13 | CATGGCTTTACTGCTCTGAGC | 21 | CTTGTGCTCAAACTGAACACTG | 22 | NA | NA | NA | NA |
| |
Z1412 | 13 | TCAAACTGCGGCTCTGTTTACA | 22 | AAGTGCTTTAGCTGGACGAGGC | 22 | 219 |
| 225 | 235 |
| |
Z1496 | 13 | CCTGAGCTTCATCCAGAGCTCC | 22 | CTTCAGTTTACAGCAGCGCTCG | 22 | NA | NA | NA | NA |
| |
Z1531 | 13 | CATCAGCACTGTGCGTACCT | 20 | CGCTGCTGCCTTCTGTCT | 18 | NA | NA | NA | NA |
| |
Z1627 | 13 | GCACATTTGTGTGGTGCTGTT | 21 | CCACCCGATATATTTGCCAAC | 21 | NA | NA | NA | NA |
| |
Z1774 | 13 | AGACGGAGTTAGCGCTGCTC | 20 | CGTTCCACAAGCTCAGGGCT | 20 | NA | NA | NA | NA |
|
|
Z1826 | 13 | CGCCACTGTAACGCCACTATAA | 22 | TTGAAGACTCCAGAGCCACAAA | 22 | NA | NA | NA | NA |
|
|
Z3424 | 13 | CTGAAATCCCATGCGATAAGGC | 22 | ATACCCTGCTGACCAGCGGA | 20 | 217 |
| 229 |
|
|
|
Z3626 | 13 | GGCAGAACAGCAGGACGGAT | 20 | CAGCGGGAGGTGTATGGAGG | 20 | NA | NA | NA | NA |
| |
Z3664 | 13 | CTCCGCTCCGGTACAGCACT | 20 | GATCTCAGAGCAGCCGACAGC | 21 | NA | NA | NA | NA |
| |
Z3969 | 13 | CCCGCAGCCTTTCAGACACT | 20 | AGTGACAGGCGCGCTCAGAG | 20 | 203 |
| 185 | 329 |
| |
Z4076 | 13 | ACTGACCCACAGCTGGTCTGG | 21 | TCTCAGTCGTCATTCCAGCTGC | 22 | NA | NA | NA | NA |
|
|
Z4252 | 13 | TGTGCGTTTGCAGTGCTCTG | 20 | GGTACTGCTGCCGCTGGACT | 20 | 120 |
| 124 | 154 |
| |
Z4285 | 13 | TGCATGATATCCCACAACCCC | 21 | GACCCTCCCCCTATCTGCGT | 20 | NA | NA | NA | NA |
| |
Z4583 | 13 | TTGCTGCCATGTGATTGGCT | 20 | TTTATTCCTCTGTGGTGACCCC | 22 | NA | NA | NA | NA | Use at your |
|
Z5188 | 13 | GCCCAAAGACATGCGCTATAGG | 22 | GCTGGAAAGTGGTATGGCCG | 20 | 97 |
| 101 |
| Use at your | |
Z5395 | 13 | CAGCCCCCTCAGTCACGACT | 20 | CGCGCCCTCTCTGAGAACAT | 20 | NA | NA | NA | NA |
| |
Z5608 | 13 | TGCCTAATGGAGGACGGCAT | 20 | AGGTGAGCACAGGCTTGAATCT | 22 | NA | NA | NA | NA |
| |
Z5643 | 13 | AGTGGAGTTGACCAGCTGCTTG | 22 | CCCCAGAATTAAAACTTCGCCA | 22 | NA | NA | NA | NA |
| |
Z6007 | 13 | AGCCCTAAACAAACCGGC | 18 | GAGCATGATCTGCTCGTTAGG | 21 | 130 | 134 | 128 | 134 |
| |
Z6104 | 13 | TCAGACTTCTGTTTGCCCG | 19 | CATGTGCCTATTGCCAACTG | 20 | 116 |
| 110 |
|
| |
Z6259 | 13 | CAACTGAGCGAGGTGTTTAGC | 21 | GTGGATGATTGGCTAGTGAAC | 21 | NA | NA | NA | NA |
| |
Z6622 | 13 | CAGTGGAGGCTCTGGCAG | 18 | ATCATGCTGGAGAAACCCTG | 20 | 250 |
| 254 |
|
| |
Z6657 | 13 | TGTGTCCCAGCAATCATTGT | 20 | GGATCACATGTGCGATGAAG | 20 | 129 | 161 | 145 | 159 |
| |
Z6726 | 13 | GATGTGCATCTGCTGCTGAT | 20 | ACTGTTCAGCCAGCAGGTG | 19 | 186 |
| 236 | 260 |
|
|
Z6745 | 13 | GAGGTGCATTATAGCCTGTTCC | 22 | AGATGTGAAAGTCCATGCTGG | 21 | 238 |
| n |
| Use at your |
|
Z7102 | 13 | AAGCACCAAGCAAGCAACA | 19 | GAGGATGGATGCGATAAGGA | 20 | 236 | n | 248 | 270 |
| |
Z7825 | 13 | CACCAGCAAAAATCATCGC | 19 | GGATGCGGGAAAACACTG | 18 | 245 |
| 167 |
|
| |
Z8051 | 13 | TGGACAGAAAAGATCAGGGG | 20 | GCCCCCTTGAAACTCCTG | 18 | ? |
| ? |
|
| |
Z8317 | 13 | ATCATTCTGCTGTGGTTACCG | 21 | ATCTCTGGACGCTGCACAC | 19 | 227 |
| 233 | 255 |
| |
Z8356 | 13 | AACAGGGGGGCAAATAATTC | 20 | GTTCCACACAATCGACATGTG | 21 | 208 |
| 162 |
|
|
|
Z8617 | 13 | GAGCCTGCGGTCATCTACAG | 20 | CCGCTTCTGTTTTATTCCCA | 20 | 229 |
| 203 | 215 |
| |
Z9049 | 13 | TTAATCCCCCTCAAGTGCC | 19 | CTCTCTTGTCGACGAGGGTC | 20 | 217 |
| 219 |
|
| |
Z9110 | 13 | GCTGAGAGCCCCTATGACTG | 20 | ATGAGAGCTGTCACCGCAC | 19 | NA | NA | NA | NA |
| |
Z9289 | 13 | TGCACTGAAGCAATCTAATTTG | 22 | CAATTGTAAGCTCCAGTCAGG | 21 | 185 |
| 175 |
|
| |
Z9357 | 13 | ATGGTTACGGTGCAGGAGAG | 20 | CTCCCTGAGCCAGTTCTGTC | 20 | 277 | 303 | 247 | 265 |
| |
Z9365 | 13 | TTCATCTGAAGCACAGGTGC | 20 | GCCAAACCTGCAATGAGC | 18 | 260 |
| 290 |
|
| |
Z9379 | 13 | AGGAAGCTCGTTCACAGGAA | 20 | GGAGCGGATGAGGAGATCAG | 20 | 175 |
| 173 | 179 |
| |
Z9423 | 13 | GGGACAGAACCAAAGGAACA | 20 | GTTGCAGTTGCTGTGCAAAT | 20 | 265 |
| 259 | 313 |
| |
Z9564 | 13 | TTCACCCAAACAGAAAAGGC | 20 | GCTGGGCTGGGCTAATATTT | 20 | ? |
| ? |
|
| |
Z9639 | 13 | CACAGCGCAGAGTCTGTCTC | 20 | TGTCACATGATCCTGCAGAAA | 21 | 158 | 258 | 218 | 226 |
| |
Z9868 | 13 | CGTGTGTGAGAGTTTTGGGA | 20 | TCAAAGCCTGTTCACAGTGC | 20 | 184 | ? | 178 | 186 |
| |
Z9878 | 13 | ACATCCACACCGTCTGTCAA | 20 | CACGTCATCAAGCAGAGGAA | 20 | ? |
| ? |
|
| |
Z9911 | 13 | GTGTCAGTTCCCATCCTCGT | 20 | GTCAGAGCCCACAGGTTGTT | 20 |
|
|
|
|
| |
Z9951 | 13 | GGATGCCAAACCTTTCCATA | 20 | GCTAACAGCCCTGGAGGAG | 19 | 198 | 200 | 234 |
|
| |
Z9963 | 13 | CAGGACACTCGGAGGAGTTC | 20 | ATCTGCTCCAGCGCTGTTAT | 20 |
|
|
|
|
| |
Z9995 | 13 | CATTATCCGGGTCTTATCTTCG | 22 | ATGGGTTGTAGATGTGATTTGC | 22 | 252 |
| 224 |
|
| |
Z10070 | 13 | CGTCAACTGTTTGGCCTTTT | 20 | TGTGATGAGGCGAGAAGATG | 20 | 179 |
| 103 |
|
| |
Z10362 | 13 | GGTGACCTCATGGAAGCATT | 20 | AGCTACTGAAACCCTTTGGC | 20 | 142 | 166 | 148 | 158 |
| |
Z10488 | 13 | CAGCACAGTATGTCGTTCCC | 20 | CGACAGGAGACAGCTGAACA | 20 | 116 |
| 118 | 170 |
| |
Z10513 | 13 | TTCCAGAACAATCGTTTGCA | 20 | GCCGAGTGTGAAAACAGCTC | 20 | 239 | 279 | 249 |
|
| |
Z10582 | 13 | CCTGTTTGCTGACACTCGAA | 20 | CACCCCGGTCTCTTAACAAA | 20 | 245 |
| 233 |
|
| |
Z10908 | 13 | CTCTGATCATGGATGTGGGA | 20 | TTCACACACTGGTAACCCCA | 20 | 263 |
| 237 | 267 |
| |
Z10963 | 13 | TTCGCAGTAAATAAACCGCC | 20 | CGCGTGGGACAAGAATATTT | 20 | 165 |
| 151 |
|
| |
Z11423 | 13 | TGCCAGGCAACATATTCAAA | 20 | ATCCCATGGTCATTGCAATT | 20 | 202 | 278 | 156 | 196 |
| |
Z11459 | 13 | GAGTGCGAATGCATGAAGAA | 20 | TGAACTTCTGCTTCCACACG | 20 | 188 | 196 | 208 | 210 |
| |
Z11536 | 13 | CTCCGCATTACCCATCATCT | 20 | ACACAGCACAGCAGAGGTTG | 20 | 297 |
| 353 |
|
| |
Z11695 | 13 | TTTACACTGCGCTATTGTCCC | 21 | TGATGACAGACCCATCAGGA | 20 | ? |
| ? |
|
| |
Z11696 | 13 | TCACACATTGTCAATTAAAAAGCA | 24 | GGTGAAGAGCGGAGTCTTTG | 20 | ? |
| ? | ? |
| |
Z11918 | 13 | TGCTCCTCAACTCTAAAGAGAGA | 23 | TTTGATTGGTCAGCGTACCA | 20 | 203 | 227 | 225 |
|
| |
Z13250 | 13 | GCTGACAGCGGACTTAAAGG | 20 | CCAAGATCTCTGGAATCCCA | 20 | 217 |
| 227 |
|
| |
Z13571 | 13 | TAGCCCACATTCTCTGCAAA | 20 | CAGCTGCCAGCTTAACACAG | 20 | 226 | 274 | 258 |
|
| |
Z13611 | 13 | GAAACCAAACGAGATCGGAA | 20 | TGCATCTAAGATCTATAGCCTTTG | 24 | 255 |
| 197 |
|
| |
Z13682 | 13 | ATGCTGGATTAGGATGCCAG | 20 | TCGAACTCACTTTCACACATCA | 22 | 141 |
| 147 |
|
| |
Z15438 | 13 | CACCGTGTTTTGTCATTTGC | 20 | GAGAGCAGAAGACTCATTTGCA | 22 | 187 |
| 189 |
|
| |
Z15455 | 13 | TTCAGGAGGCACACGTCTC | 19 | TATAAACCTTGTGCCAGTGGG | 21 | 254 |
| 350 |
|
| |
Z17223 | 13 | ACAAACGGTTTTGTTCGGTC | 20 | ACTCATGATTCAACTGTGCCC | 21 | 139 | 145 | 151 | 201 |
| |
Z17233 | 13 | AATCGACAGCATTAATCACACG | 22 | AAAACAAAGTCAAATTGGCAGA | 22 | 169 |
| 193 | 205 |
| |
Z20088 | 13 | CCATCACAGCTGCTCATTCA | 20 | CCAGTCATGGTTTTTGTCCC | 20 | ? | ? | ? | ? |
| |
Z20208 | 13 | GGCATTCATAAACATGTCGG | 20 | TTTAAGGCTGTCTCGCCAGT | 20 | 194 |
| 258 |
|
| |
Z20379 | 13 | CCTGTTGTAACTTGCCCGTT | 20 | GGGAACCACACTTGGGTATG | 20 | 173 |
| 169 | 171 |
| |
Z20429 | 13 | TTGGCAAAAACAGTGGTTGA | 20 | GTGATGGAGAGGTGGGACAT | 20 | 255 |
| 243 |
|
| |
Z21403 | 13 | TTGCAATGTTGCATCAGGAT | 20 | TTTGGGGAGAAATGGAGATG | 20 | 252 |
| 244 |
|
| |
Z21436 | 13 | AGGGCCTACGAGGAGTACGT | 20 | GCCTTCAGGAGATTGCTGAC | 20 | 226 | 238 | 228 |
|
| |
Z21657 | 13 | GATAAGCCTGCCCATTTTGA | 20 | CTGAGCACGAGGCTACACAC | 20 | 278 |
| 274 |
|
| |
Z22022 | 13 | TGCATCACTTCCTGTTGAGC | 20 | ACTGCCATTACTGCCACACA | 20 | 246 |
| 244 |
|
| |
Z22194 | 13 | TGTGAGAGATGCATGCAACA | 20 | AGTGCATGCTGTTCAAGACG | 20 | 180 | 182 | 178 |
|
| |
Z22396 | 13 | TTGGACCGAATGAAAAGAGG | 20 | GCCGTGCTGCTTCATATTTT | 20 | 191 |
| 187 |
|
|
Legend
Table generated Wed Oct 7 16:28:07 1998
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