Linkage Group 13
Linkage Group 13 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z28 |
13 |
TCTGGTGGACTCGCTGAAG |
19 |
AAGTAAGCGCCACCAGAGTG |
20 |
141 |
|
121 |
|
|
|
Z818 |
13 |
CATGGCTTTACTGCTCTGAGC |
21 |
CTTGTGCTCAAACTGAACACTG |
22 |
NA |
NA |
NA |
NA |
|
|
Z1412 |
13 |
TCAAACTGCGGCTCTGTTTACA |
22 |
AAGTGCTTTAGCTGGACGAGGC |
22 |
219 |
|
225 |
235 |
|
|
Z1496 |
13 |
CCTGAGCTTCATCCAGAGCTCC |
22 |
CTTCAGTTTACAGCAGCGCTCG |
22 |
NA |
NA |
NA |
NA |
|
|
Z1531 |
13 |
CATCAGCACTGTGCGTACCT |
20 |
CGCTGCTGCCTTCTGTCT |
18 |
NA |
NA |
NA |
NA |
|
|
Z1627 |
13 |
GCACATTTGTGTGGTGCTGTT |
21 |
CCACCCGATATATTTGCCAAC |
21 |
NA |
NA |
NA |
NA |
|
|
Z1774 |
13 |
AGACGGAGTTAGCGCTGCTC |
20 |
CGTTCCACAAGCTCAGGGCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1826 |
13 |
CGCCACTGTAACGCCACTATAA |
22 |
TTGAAGACTCCAGAGCCACAAA |
22 |
NA |
NA |
NA |
NA |
|
|
Z3424 |
13 |
CTGAAATCCCATGCGATAAGGC |
22 |
ATACCCTGCTGACCAGCGGA |
20 |
217 |
|
229 |
|
|
|
Z3626 |
13 |
GGCAGAACAGCAGGACGGAT |
20 |
CAGCGGGAGGTGTATGGAGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z3664 |
13 |
CTCCGCTCCGGTACAGCACT |
20 |
GATCTCAGAGCAGCCGACAGC |
21 |
NA |
NA |
NA |
NA |
|
|
Z3969 |
13 |
CCCGCAGCCTTTCAGACACT |
20 |
AGTGACAGGCGCGCTCAGAG |
20 |
203 |
|
185 |
329 |
|
|
Z4076 |
13 |
ACTGACCCACAGCTGGTCTGG |
21 |
TCTCAGTCGTCATTCCAGCTGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4252 |
13 |
TGTGCGTTTGCAGTGCTCTG |
20 |
GGTACTGCTGCCGCTGGACT |
20 |
120 |
|
124 |
154 |
|
|
Z4285 |
13 |
TGCATGATATCCCACAACCCC |
21 |
GACCCTCCCCCTATCTGCGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z4583 |
13 |
TTGCTGCCATGTGATTGGCT |
20 |
TTTATTCCTCTGTGGTGACCCC |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5188 |
13 |
GCCCAAAGACATGCGCTATAGG |
22 |
GCTGGAAAGTGGTATGGCCG |
20 |
97 |
|
101 |
|
Use at your |
|
Z5395 |
13 |
CAGCCCCCTCAGTCACGACT |
20 |
CGCGCCCTCTCTGAGAACAT |
20 |
NA |
NA |
NA |
NA |
|
|
Z5608 |
13 |
TGCCTAATGGAGGACGGCAT |
20 |
AGGTGAGCACAGGCTTGAATCT |
22 |
NA |
NA |
NA |
NA |
|
|
Z5643 |
13 |
AGTGGAGTTGACCAGCTGCTTG |
22 |
CCCCAGAATTAAAACTTCGCCA |
22 |
NA |
NA |
NA |
NA |
|
|
Z6007 |
13 |
AGCCCTAAACAAACCGGC |
18 |
GAGCATGATCTGCTCGTTAGG |
21 |
130 |
134 |
128 |
134 |
|
|
Z6104 |
13 |
TCAGACTTCTGTTTGCCCG |
19 |
CATGTGCCTATTGCCAACTG |
20 |
116 |
|
110 |
|
|
|
Z6259 |
13 |
CAACTGAGCGAGGTGTTTAGC |
21 |
GTGGATGATTGGCTAGTGAAC |
21 |
NA |
NA |
NA |
NA |
|
|
Z6622 |
13 |
CAGTGGAGGCTCTGGCAG |
18 |
ATCATGCTGGAGAAACCCTG |
20 |
250 |
|
254 |
|
|
|
Z6657 |
13 |
TGTGTCCCAGCAATCATTGT |
20 |
GGATCACATGTGCGATGAAG |
20 |
129 |
161 |
145 |
159 |
|
|
Z6726 |
13 |
GATGTGCATCTGCTGCTGAT |
20 |
ACTGTTCAGCCAGCAGGTG |
19 |
186 |
|
236 |
260 |
|
|
Z6745 |
13 |
GAGGTGCATTATAGCCTGTTCC |
22 |
AGATGTGAAAGTCCATGCTGG |
21 |
238 |
|
n |
|
Use at your |
|
Z7102 |
13 |
AAGCACCAAGCAAGCAACA |
19 |
GAGGATGGATGCGATAAGGA |
20 |
236 |
n |
248 |
270 |
|
|
Z7825 |
13 |
CACCAGCAAAAATCATCGC |
19 |
GGATGCGGGAAAACACTG |
18 |
245 |
|
167 |
|
|
|
Z8051 |
13 |
TGGACAGAAAAGATCAGGGG |
20 |
GCCCCCTTGAAACTCCTG |
18 |
? |
|
? |
|
|
|
Z8317 |
13 |
ATCATTCTGCTGTGGTTACCG |
21 |
ATCTCTGGACGCTGCACAC |
19 |
227 |
|
233 |
255 |
|
|
Z8356 |
13 |
AACAGGGGGGCAAATAATTC |
20 |
GTTCCACACAATCGACATGTG |
21 |
208 |
|
162 |
|
|
|
Z8617 |
13 |
GAGCCTGCGGTCATCTACAG |
20 |
CCGCTTCTGTTTTATTCCCA |
20 |
229 |
|
203 |
215 |
|
|
Z9049 |
13 |
TTAATCCCCCTCAAGTGCC |
19 |
CTCTCTTGTCGACGAGGGTC |
20 |
217 |
|
219 |
|
|
|
Z9110 |
13 |
GCTGAGAGCCCCTATGACTG |
20 |
ATGAGAGCTGTCACCGCAC |
19 |
NA |
NA |
NA |
NA |
|
|
Z9289 |
13 |
TGCACTGAAGCAATCTAATTTG |
22 |
CAATTGTAAGCTCCAGTCAGG |
21 |
185 |
|
175 |
|
|
|
Z9357 |
13 |
ATGGTTACGGTGCAGGAGAG |
20 |
CTCCCTGAGCCAGTTCTGTC |
20 |
277 |
303 |
247 |
265 |
|
|
Z9365 |
13 |
TTCATCTGAAGCACAGGTGC |
20 |
GCCAAACCTGCAATGAGC |
18 |
260 |
|
290 |
|
|
|
Z9379 |
13 |
AGGAAGCTCGTTCACAGGAA |
20 |
GGAGCGGATGAGGAGATCAG |
20 |
175 |
|
173 |
179 |
|
|
Z9423 |
13 |
GGGACAGAACCAAAGGAACA |
20 |
GTTGCAGTTGCTGTGCAAAT |
20 |
265 |
|
259 |
313 |
|
|
Z9564 |
13 |
TTCACCCAAACAGAAAAGGC |
20 |
GCTGGGCTGGGCTAATATTT |
20 |
? |
|
? |
|
|
|
Z9639 |
13 |
CACAGCGCAGAGTCTGTCTC |
20 |
TGTCACATGATCCTGCAGAAA |
21 |
158 |
258 |
218 |
226 |
|
|
Z9868 |
13 |
CGTGTGTGAGAGTTTTGGGA |
20 |
TCAAAGCCTGTTCACAGTGC |
20 |
184 |
? |
178 |
186 |
|
|
Z9878 |
13 |
ACATCCACACCGTCTGTCAA |
20 |
CACGTCATCAAGCAGAGGAA |
20 |
? |
|
? |
|
|
|
Z9911 |
13 |
GTGTCAGTTCCCATCCTCGT |
20 |
GTCAGAGCCCACAGGTTGTT |
20 |
|
|
|
|
|
|
Z9951 |
13 |
GGATGCCAAACCTTTCCATA |
20 |
GCTAACAGCCCTGGAGGAG |
19 |
198 |
200 |
234 |
|
|
|
Z9963 |
13 |
CAGGACACTCGGAGGAGTTC |
20 |
ATCTGCTCCAGCGCTGTTAT |
20 |
|
|
|
|
|
|
Z9995 |
13 |
CATTATCCGGGTCTTATCTTCG |
22 |
ATGGGTTGTAGATGTGATTTGC |
22 |
252 |
|
224 |
|
|
|
Z10070 |
13 |
CGTCAACTGTTTGGCCTTTT |
20 |
TGTGATGAGGCGAGAAGATG |
20 |
179 |
|
103 |
|
|
|
Z10362 |
13 |
GGTGACCTCATGGAAGCATT |
20 |
AGCTACTGAAACCCTTTGGC |
20 |
142 |
166 |
148 |
158 |
|
|
Z10488 |
13 |
CAGCACAGTATGTCGTTCCC |
20 |
CGACAGGAGACAGCTGAACA |
20 |
116 |
|
118 |
170 |
|
|
Z10513 |
13 |
TTCCAGAACAATCGTTTGCA |
20 |
GCCGAGTGTGAAAACAGCTC |
20 |
239 |
279 |
249 |
|
|
|
Z10582 |
13 |
CCTGTTTGCTGACACTCGAA |
20 |
CACCCCGGTCTCTTAACAAA |
20 |
245 |
|
233 |
|
|
|
Z10908 |
13 |
CTCTGATCATGGATGTGGGA |
20 |
TTCACACACTGGTAACCCCA |
20 |
263 |
|
237 |
267 |
|
|
Z10963 |
13 |
TTCGCAGTAAATAAACCGCC |
20 |
CGCGTGGGACAAGAATATTT |
20 |
165 |
|
151 |
|
|
|
Z11423 |
13 |
TGCCAGGCAACATATTCAAA |
20 |
ATCCCATGGTCATTGCAATT |
20 |
202 |
278 |
156 |
196 |
|
|
Z11459 |
13 |
GAGTGCGAATGCATGAAGAA |
20 |
TGAACTTCTGCTTCCACACG |
20 |
188 |
196 |
208 |
210 |
|
|
Z11536 |
13 |
CTCCGCATTACCCATCATCT |
20 |
ACACAGCACAGCAGAGGTTG |
20 |
297 |
|
353 |
|
|
|
Z11695 |
13 |
TTTACACTGCGCTATTGTCCC |
21 |
TGATGACAGACCCATCAGGA |
20 |
? |
|
? |
|
|
|
Z11696 |
13 |
TCACACATTGTCAATTAAAAAGCA |
24 |
GGTGAAGAGCGGAGTCTTTG |
20 |
? |
|
? |
? |
|
|
Z11918 |
13 |
TGCTCCTCAACTCTAAAGAGAGA |
23 |
TTTGATTGGTCAGCGTACCA |
20 |
203 |
227 |
225 |
|
|
|
Z13250 |
13 |
GCTGACAGCGGACTTAAAGG |
20 |
CCAAGATCTCTGGAATCCCA |
20 |
217 |
|
227 |
|
|
|
Z13571 |
13 |
TAGCCCACATTCTCTGCAAA |
20 |
CAGCTGCCAGCTTAACACAG |
20 |
226 |
274 |
258 |
|
|
|
Z13611 |
13 |
GAAACCAAACGAGATCGGAA |
20 |
TGCATCTAAGATCTATAGCCTTTG |
24 |
255 |
|
197 |
|
|
|
Z13682 |
13 |
ATGCTGGATTAGGATGCCAG |
20 |
TCGAACTCACTTTCACACATCA |
22 |
141 |
|
147 |
|
|
|
Z15438 |
13 |
CACCGTGTTTTGTCATTTGC |
20 |
GAGAGCAGAAGACTCATTTGCA |
22 |
187 |
|
189 |
|
|
|
Z15455 |
13 |
TTCAGGAGGCACACGTCTC |
19 |
TATAAACCTTGTGCCAGTGGG |
21 |
254 |
|
350 |
|
|
|
Z17223 |
13 |
ACAAACGGTTTTGTTCGGTC |
20 |
ACTCATGATTCAACTGTGCCC |
21 |
139 |
145 |
151 |
201 |
|
|
Z17233 |
13 |
AATCGACAGCATTAATCACACG |
22 |
AAAACAAAGTCAAATTGGCAGA |
22 |
169 |
|
193 |
205 |
|
|
Z20088 |
13 |
CCATCACAGCTGCTCATTCA |
20 |
CCAGTCATGGTTTTTGTCCC |
20 |
? |
? |
? |
? |
|
|
Z20208 |
13 |
GGCATTCATAAACATGTCGG |
20 |
TTTAAGGCTGTCTCGCCAGT |
20 |
194 |
|
258 |
|
|
|
Z20379 |
13 |
CCTGTTGTAACTTGCCCGTT |
20 |
GGGAACCACACTTGGGTATG |
20 |
173 |
|
169 |
171 |
|
|
Z20429 |
13 |
TTGGCAAAAACAGTGGTTGA |
20 |
GTGATGGAGAGGTGGGACAT |
20 |
255 |
|
243 |
|
|
|
Z21403 |
13 |
TTGCAATGTTGCATCAGGAT |
20 |
TTTGGGGAGAAATGGAGATG |
20 |
252 |
|
244 |
|
|
|
Z21436 |
13 |
AGGGCCTACGAGGAGTACGT |
20 |
GCCTTCAGGAGATTGCTGAC |
20 |
226 |
238 |
228 |
|
|
|
Z21657 |
13 |
GATAAGCCTGCCCATTTTGA |
20 |
CTGAGCACGAGGCTACACAC |
20 |
278 |
|
274 |
|
|
|
Z22022 |
13 |
TGCATCACTTCCTGTTGAGC |
20 |
ACTGCCATTACTGCCACACA |
20 |
246 |
|
244 |
|
|
|
Z22194 |
13 |
TGTGAGAGATGCATGCAACA |
20 |
AGTGCATGCTGTTCAAGACG |
20 |
180 |
182 |
178 |
|
|
|
Z22396 |
13 |
TTGGACCGAATGAAAAGAGG |
20 |
GCCGTGCTGCTTCATATTTT |
20 |
191 |
|
187 |
|
|
Legend
Table generated Wed Oct 7 16:28:07 1998
