Linkage Group 9
Linkage Group 09 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z10130 |
9 |
GCTGCTGACAGATTCAGTGC |
20 |
TACCTGCTGCTGCAGTTTTG |
20 |
287 |
|
197 |
249 |
|
|
Z10166 |
9 |
TTGAGCTGTGAACAAGCCAC |
20 |
CCTCTTCATCTGGCATCCAT |
20 |
103 |
113 |
161 |
199 |
|
|
Z106 |
9 |
GAGACCGACCGTCTGCTAAC |
20 |
TCCAGAGAACACCCTGCTG |
19 |
NA |
NA |
NA |
NA |
|
|
Z10789 |
9 |
ATGCATCACACAGCTGCAGT |
20 |
GCGTTTCTCCCAGCTAACAG |
20 |
165 |
|
161 |
179 |
|
|
Z11672 |
9 |
ATAATCTGCTGCATCTCCCC |
20 |
GCGAGTTCAAAGCATGACAA |
20 |
? |
|
? |
? |
|
|
Z11702 |
9 |
ACGCTCATGTCCATTCATCA |
20 |
CTACAGAGAATGGAGCCCTG |
20 |
? |
|
? |
|
|
|
Z11781 |
9 |
ATTGTGCCTTGAGTGAGGCT |
20 |
GAGGTGACTGCAACCGATTT |
20 |
? |
|
? |
|
|
|
Z11785 |
9 |
ACCATCACGCCAAAATAACC |
20 |
CAGATTCACACAGAGCGCAT |
20 |
194 |
|
186 |
198 |
|
|
Z1227 |
9 |
ACAGTGTTGACCTGCCGAC |
19 |
GAATGAGCAGAAATCTCCGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z1270 |
9 |
GCAGGTTTACAGCGCACTGG |
20 |
GAAGAGTTCAGTAACACAAGTCC |
23 |
NA |
NA |
NA |
NA |
|
|
Z1273 |
9 |
TAGACTCAATGGGGGAGGTG |
20 |
GTATGGTGGAAATCAAATGCG |
21 |
139 |
|
135 |
137 |
|
|
Z13213 |
9 |
TCGGCAGGGCTTTTCACT |
18 |
GTTAGTCTCCTCGACGGCTG |
20 |
? |
|
? |
|
|
|
Z1322 |
9 |
GGACGCCTGTAAGGTCACAAA |
21 |
AGCGGACCACCAGAGTCACC |
20 |
151 |
225 |
161 |
185 |
|
|
Z13221 |
9 |
CTGTTCAGCCACTGAAACACA |
21 |
CTGCTCACCTGATCACCATG |
20 |
152 |
|
104 |
|
|
|
Z13289 |
9 |
TATGGATGCCATTGTAGCGA |
20 |
CATGGTATCCCACTGTTCCC |
20 |
146 |
|
144 |
|
|
|
Z13450 |
9 |
CAGCCGTGTGTGGTCATTAG |
20 |
AAATGCATCTGGAGACCAGG |
20 |
? |
|
? |
|
|
|
Z13486 |
9 |
CTTACTCTCGGCACCTCTGG |
20 |
CCAGCCTTTATTCACTCTCTCA |
22 |
240 |
268 |
184 |
208 |
|
|
Z15447 |
9 |
AATGCAGATTGTCTCCCGAG |
20 |
CATTGTGGGAATACAGGGTACA |
22 |
NA |
NA |
NA |
NA |
|
|
Z15449 |
9 |
GATAGCCAAGCGAGCTGC |
18 |
TTGAAGGCAAGGGAGGAAG |
19 |
145 |
|
143 |
|
|
|
Z1566 |
9 |
TCCATCCCTCAGCAGAGC |
18 |
AAGGGTCTGGAAAACCGC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1660 |
9 |
TGCCGAGCGCAGAAATAAAA |
20 |
GAGGATATTTGGGTGCACCAAA |
22 |
NA |
NA |
NA |
NA |
|
|
Z1663 |
9 |
TGTAATGGGGTATCGGCTGC |
20 |
GCGCAGGCAAACTGCAGTTT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1777 |
9 |
TGCGCAAGACCTGGCTGGAC |
20 |
TGGCTGCCTGCAGAATACAA |
21 |
NA |
NA |
NA |
NA |
|
|
Z1805 |
9 |
AGTAAAAATGGGGTGCGGCC |
20 |
CTAAGGGCCGTGCCAGAGGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z1820 |
9 |
AGCAGAATCCTGCCCATGAC |
20 |
GCTGGAAAGGATCACCACCG |
20 |
NA |
NA |
NA |
NA |
|
|
Z1830 |
9 |
TTGCGACGTCTGGACGAGAG |
20 |
CTGTGGCAACCCCGGATTAA |
20 |
NA |
NA |
NA |
NA |
|
|
Z20031 |
9 |
TGTCAGTGATCTCTGGGCAG |
20 |
CTAACGCCCTGTCCTCAGAG |
20 |
250 |
254 |
242 |
250 |
|
|
Z20327 |
9 |
CTCCCATGAAACGGTCCTAA |
20 |
ACCTTTCTTTTCTCATAGCTTATCA |
25 |
284 |
302 |
276 |
298 |
|
|
Z20860 |
9 |
TGCAGATATCCTCCACGTTG |
20 |
CTCCACCTCAGGGTCATTGT |
20 |
227 |
331 |
225 |
239 |
|
|
Z21824 |
9 |
CTGTCGCCACACATACAGCT |
20 |
TGAAGTTTTGGACCATCAAGAA |
22 |
233 |
|
155 |
223 |
|
|
Z22141 |
9 |
ACCATGGTGAATCTGTGCAA |
20 |
CAGCTAATCACAGACCACTGGA |
22 |
NA |
NA |
NA |
NA |
|
|
Z22173 |
9 |
GCAGCTCACACTGACTGGAG |
20 |
AGGTAAGAGCTGGAGCCGAT |
20 |
143 |
181 |
145 |
191 |
|
|
Z22682 |
9 |
GCTTTGTGCTTAGGGGAGTG |
20 |
CCCCTAATCACAGGCATTTC |
20 |
NA |
NA |
NA |
NA |
|
|
Z3124 |
9 |
CGGCTCCACAGGAACATGAC |
20 |
GCCGATGCCATTTTCTGTCC |
20 |
135 |
|
131 |
|
|
|
Z3651 |
9 |
TGTTGGAGGAGTTGACCAGGTG |
22 |
CAGATCCTGCCTGACCTGCA |
20 |
164 |
|
142 |
|
|
|
Z3763C |
9 |
CCAATTAACGGAAGTGAACCGC |
22 |
GCACTGGATCAGTCCCGCTT |
20 |
147 |
|
159 |
|
Use at your |
|
Z3784 |
9 |
TACGCTTGCAGTGTTTGCAGTG |
22 |
ACGCCGTCTGGCATCAAACT |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z4168 |
9 |
GTGGAGCATGCATATTCTCCCC |
22 |
TTACACAGCGGAAGCCCTGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z4229 |
9 |
AGTGATGACACCGCGTCTGC |
20 |
GAACCCACAGGCCGTTAAACC |
21 |
NA |
NA |
NA |
NA |
|
|
Z4410 |
9 |
TGCATTCCTATCCATGTA |
18 |
ACTAGAGGGCAGAACAGATC |
20 |
NA |
NA |
NA |
NA |
|
|
Z4544 |
9 |
AATTGGGTAGGCTAAGTTGCCC |
22 |
AATCCAGGGTAACCACATTGGA |
22 |
NA |
NA |
NA |
NA |
|
|
Z4577 |
9 |
TGTGTGCACCTGACAGCAGG |
20 |
GTAAAGAGCCTGCCTACCCACC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4673 |
9 |
TGTGAGAGACCAAACAGGCAGA |
22 |
TCTGCTGAGGCTTTGCAGTAAG |
22 |
260 |
|
270 |
|
|
|
Z5080 |
9 |
AGAACACACACAGCGTGACCTC |
22 |
ATGGGAAGAACACCCCCACG |
20 |
95 |
|
219 |
229 |
|
|
Z5394 |
9 |
ATCGTGCAGCCCTACTTTGTG |
21 |
GACAATTTCCTGCCAAACAACA |
22 |
NA |
NA |
NA |
NA |
|
|
Z5564 |
9 |
CAGTGCTAACCACAGCACCACC |
22 |
CAGCCCCAACAATTTGTCCC |
20 |
235 |
249 |
229 |
239 |
|
|
Z559 |
9 |
ACCCGGCTGTAGTGAAACC |
19 |
CCTCTCTGCCCTCCTCTTG |
19 |
NA |
NA |
NA |
NA |
|
|
Z562 |
9 |
TGTACTTCTCTCTCAATACACCGG |
24 |
AGGCCTCTGATTAACTGAATTACA |
24 |
207 |
|
199 |
|
|
|
Z6268 |
9 |
ATCAAAGACTCGCACACGC |
19 |
CCTTTCCACCCCTGACTGAC |
20 |
255 |
|
215 |
285 |
|
|
Z6336 |
9 |
GCATCAGTCTGCTCCGTGT |
19 |
GAGGCTTCATTCCTGCTTTG |
20 |
141 |
161 |
141 |
223 |
|
|
Z6337B |
9 |
TGCAGCGCATGACAGAGTAT |
20 |
TGAACATCCCTCATTCCACA |
20 |
|
|
|
|
|
|
Z6430 |
9 |
AACAGAAGTGCCAGCATCG |
19 |
GCTGTGTCACTCACACAAATG |
21 |
210 |
|
194 |
242 |
|
|
Z6574 |
9 |
AAGTTGCATTGGTGGAGAGC |
20 |
TGTAATGGCATCATCCAGACA |
21 |
112 |
122 |
114 |
150 |
|
|
Z6663 |
9 |
CATCTTCATTGCCCAGCC |
18 |
ATAGGAGCCCATCTGCACAC |
20 |
156 |
|
162 |
164 |
|
|
Z6845 |
9 |
TCACATAAGCAAGAGCGCTG |
20 |
AGTCTTTGTCCCATTTCACCC |
21 |
184 |
|
138 |
n |
|
|
Z6846 |
9 |
TCTTCATCATGATTGACACACA |
22 |
TGCAAAGCATCCTACAGAACA |
21 |
114 |
130 |
140 |
172 |
|
|
Z7001 |
9 |
TTCCACAGGCTGACCTTTCT |
20 |
TCCTGCTTTGAGGACTGTTG |
20 |
? |
|
? |
|
|
|
Z7120 |
9 |
TGTGCTTGCTTCTTGGTTGC |
20 |
TTACAGCCACGCACTCTCAC |
20 |
264 |
|
234 |
254 |
|
|
Z7144 |
9 |
AGAAGGTCCATGATTGACCG |
20 |
CCGTGTTTAACGTACATCATGC |
22 |
|
|
|
|
|
|
Z7564 |
9 |
TGTCTGACATCACTGGTGCA |
20 |
TCCATGCTCAGGTCAGACAC |
20 |
153 |
|
163 |
197 |
|
|
Z7807 |
9 |
TGACATCACTGTTGGGGAAA |
20 |
GCAAGTCAGCTGACGGGTAC |
20 |
230 |
234 |
228 |
|
|
|
Z7813 |
9 |
AATTCAATTAGGGCCAGGCT |
20 |
ATGCGTGAACCATTACTGCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z8233 |
9 |
TGGAGCAATGGAATACTGCA |
20 |
CTTGCTTGATATTCCGGCAT |
20 |
? |
|
? |
n |
|
|
Z8348 |
9 |
TTCACCCACAGACCTGATGA |
20 |
TGGAGATCTGTCTCTTTCCCA |
21 |
256 |
|
238 |
250 |
|
|
Z8363 |
9 |
CCAGTAATGCCACACTGGG |
19 |
TGTCTCATTCAGCGAGCG |
18 |
149 |
183 |
199 |
211 |
|
|
Z8505 |
9 |
TGGAGACCATTTCCATTTCC |
20 |
ATCGTAAAGCCATGGGCATT |
20 |
261 |
|
279 |
n |
|
|
Z854 |
9 |
TCTTCTGAATCCTCACTCAGAGC |
23 |
CCATAATGCATTTGGGGAAG |
20 |
NA |
NA |
NA |
NA |
|
|
Z8542 |
9 |
CAGGCTATGAGTGTGCTGGA |
20 |
CAATTAGACGTGGAAGCGCT |
20 |
259 |
|
219 |
|
|
|
Z9112 |
9 |
TGCTAAATAGGCTACGCTCTTT |
22 |
CGAAGAAAAGGAAATTCTTCTG |
22 |
233 |
|
211 |
231 |
|
|
Z916 |
9 |
GGATCTGTTCAGCCACTGAA |
20 |
TCACCTGATCACCATGCAGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z9224 |
9 |
TGCATGAGTCCAGAGAAACTT |
21 |
AGAGCAGAGCTGAGGACTGC |
20 |
192 |
|
160 |
164 |
|
|
Z9240 |
9 |
TGGACATGAATGGATACTGCA |
21 |
CTCAGTTGACAACTGCATCCA |
21 |
174 |
|
188 |
|
|
|
Z9439 |
9 |
GCCCTTTTTTCACATTTAAACG |
22 |
AATTTAAGGCAAACGGGATATT |
22 |
259 |
|
257 |
263 |
|
|
Z9479 |
9 |
GGCATTCCCTTATCCCTGTT |
20 |
TTGATTATTTGTTCAGATGCCA |
22 |
135 |
137 |
131 |
|
|
|
Z9754 |
9 |
TGCTCTCAGCAGGTGTCTGT |
20 |
GGTCAGTCGTCCTCTTCAGC |
20 |
149 |
|
159 |
|
|
|
Z9923 |
9 |
CTCAAATCCAGTCATCCCGT |
20 |
TCTGGGATCTCCAGAGGAAA |
20 |
203 |
|
189 |
193 |
|
|
Z9975 |
9 |
GCGCTCAATGCAGCAGTT |
18 |
ACAGAGGAGACCAGGGGAAT |
20 |
109 |
|
133 |
|
|
Legend
Table generated Wed Oct 7 16:28:07 1998
