Linkage Group 4
Linkage Group 04 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z984 |
4 |
TTTCTCAGAGCACAACCTTTAAC |
23 |
GAGAGCAAACTCCAGCTGCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1366 |
4 |
TACTTCAGCTTCATCCAGACCA |
33 |
CTGAACTCTGAGTCCAGACCG |
21 |
119 |
121 |
103 |
111 |
|
|
Z1389 |
4 |
TTTGACAAGTGAGTGTCCGC |
30 |
TAGGACCAGCTTCTGCCTGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1416 |
4 |
GGACACATGTTGAAACTCTACAGG |
24 |
ACCTGCCCTACCCACTCC |
18 |
130 |
|
126 |
|
|
|
Z1505 |
4 |
GAGTGCTAATCTCCGACTCGGT |
22 |
CTCATTAGAATAAACTCTCTGAAC |
24 |
121 |
|
103 |
115 |
|
|
Z1525 |
4 |
CTTCAGCGCATGTGATCG |
18 |
GACCTTCTCGCTGGACTGAC |
20 |
106 |
|
126 |
162 |
|
|
Z3025 |
4 |
CCCAGACCTTCTGATCCAGGC |
21 |
CGCACTTTCATCTACAGCTCGA |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z3219 |
4 |
AGCGGCTGTAGATGTCGATGC |
21 |
CCGTGTGTGTGCACATGACC |
20 |
NA |
NA |
NA |
NA |
|
|
Z3275 |
4 |
TTATTAACACAGACAGCCGGG |
21 |
CAGACAGATGCAGACCCTCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z3602 |
4 |
AGCATTAGTGCATTCTGCGCA |
21 |
TTCCGATCCCAAAATTACAGCA |
22 |
105 |
107 |
87 |
129 |
|
|
Z4025 |
4 |
TGTGTGCTCACTGCTGCTGG |
20 |
CTCAGAGCGCTGGTCAACCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z4951 |
4 |
TTCCTTCATGGTGGGCGAAT |
20 |
CCTCTCGTTTGGAGCCCAGA |
20 |
257 |
|
245 |
273 |
|
|
Z5095 |
4 |
GTTGGGTTTAGGGGTAGGCTGG |
22 |
GCGCCCCAAATGGTTTTGTA |
20 |
NA |
NA |
NA |
NA |
|
|
Z5112 |
4 |
CAGCGACGCTTCAGTGCTGT |
20 |
CCGGGAGAGTGAGATGCTGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z5167 |
4 |
GCCCTTGGAACAGTCACATTCA |
22 |
TGCAAGCCATCACTGGGAAA |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z6482 |
4 |
GGATGCTTCCGTCACTCTTC |
20 |
AGACCTGCACCTGTTCCAGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z6503 |
4 |
TCTGAGTCAGGCCTACCCC |
19 |
ATCTCCAGCCAAAATACATTCA |
22 |
320 |
|
300 |
|
|
|
Z6580 |
4 |
GGATTTCAGCGGCAGAATAA |
20 |
GACTGCGCATTCTTCACTCA |
20 |
136 |
|
114 |
128 |
|
|
Z6596 |
4 |
GATGTCCACCTTTCCACCC |
19 |
GGTCACAGGGTGGCAGTC |
18 |
170 |
178 |
164 |
184 |
Use at your |
|
Z6908 |
4 |
TGAGGTTACATGTCTTTGCTGG |
22 |
ACCCCAATGGCAATGATTAA |
20 |
NA |
NA |
NA |
NA |
|
|
Z6977 |
4 |
TGCTAATTGGGACACTGCAA |
20 |
AGAGTGGCACACTGGTAAAACA |
22 |
? |
? |
? |
? |
|
|
Z7104 |
4 |
CCTCCCTTTAGAGCCACCTG |
20 |
GCCCATCACAAACCAGAACT |
20 |
178 |
|
172 |
180 |
|
|
Z7191 |
4 |
TTTTTGTTTCATCTCTCTCCCT |
22 |
AGGTTTCCAAGACGGGCTAT |
20 |
115 |
|
119 |
121 |
|
|
Z7490 |
4 |
TGGTGGATGTGTTCACGACT |
20 |
TGTAAGTCCTTCAGAAGAGGCA |
22 |
215 |
249 |
231 |
245 |
|
|
Z7496 |
4 |
CGCTCATTAGCATGGACAAG |
20 |
AGACGCAAGGAGGGAAATTT |
20 |
? |
|
? |
? |
|
|
Z7524 |
4 |
TCTGGCAGAGCAGACACATC |
20 |
TTGCTGTGAGGTGATTGTAACA |
22 |
103 |
|
109 |
|
|
|
Z7629 |
4 |
CGAAACTAACACGAACACCG |
20 |
CTTTAGCACAACACGACCGA |
20 |
225 |
n |
215 |
223 |
|
|
Z7918 |
4 |
AGATGATTTGCCCTTTGTGG |
20 |
GGCTGCATGCCATTTATTCT |
20 |
112 |
132 |
124 |
144 |
|
|
Z7931 |
4 |
CTCATCCTTGCTGTGGGATT |
20 |
TTTCCACCCGCTACTGCC |
18 |
278 |
288 |
294 |
|
|
|
Z8184 |
4 |
ATCTGCCTGTCAAATTTCCG |
20 |
GAAAATGAACGCGGTGAGAT |
20 |
238 |
|
234 |
240 |
|
|
Z8226 |
4 |
TCACTCACTTTCCCGCTTG |
19 |
ACTCATGGTGTTTTCCTGGTG |
22 |
111 |
|
117 |
n |
|
|
Z9247 |
4 |
TTGACAGCTTTCAGGTGCAG |
20 |
TGCCCATGTTCATAGCTCTG |
20 |
118 |
|
110 |
|
|
|
Z9319 |
4 |
ATGAGGGAATGTGGCTGTTC |
20 |
TCCGGACATGTTCTGATGAA |
20 |
156 |
|
158 |
162 |
|
|
Z9324 |
4 |
CAGCACAAAATCTGGCTTCA |
20 |
CTCTCCACACATGTGCTCTCA |
21 |
176 |
|
174 |
178 |
|
|
Z9496 |
4 |
CGCTTGTGTTCCACAGTGAT |
20 |
TTGTGTTCTTCTCGTGCTCG |
20 |
280 |
|
294 |
298 |
|
|
Z9590 |
4 |
TACATGAGCAGCGGCATTAC |
20 |
GGCACTTACACACACACACTTTC |
23 |
? |
? |
? |
? |
|
|
Z9667 |
4 |
AGTCGAGCTGAACTTTGGGA |
20 |
GATGCAAATAGCAATGGCCT |
20 |
263 |
|
249 |
|
|
|
Z9750 |
4 |
GCACCAATCCGGAAAGAATA |
20 |
AGCTTTAGAGCTCACTGCGC |
20 |
205 |
225 |
225 |
309 |
|
|
Z9920 |
4 |
GCTGCTGAGTTGTGGTCTTG |
20 |
TGCCCTTAAATCATACAAAATTACA |
25 |
148 |
202 |
184 |
192 |
|
|
Z10066 |
4 |
CTTCCTGCTCCGCCTCCT |
18 |
CTACCTGTCTGAACTCCGGC |
20 |
189 |
|
177 |
199 |
|
|
Z10164 |
4 |
ATTAAAACCCACACACGCAA |
20 |
GTCCCGCTCATTGTTTGTTT |
20 |
298 |
204 |
168 |
216 |
|
|
Z10280 |
4 |
AATGTTCCGTACGGTTCTGC |
20 |
CTTTTGCCCTTCTGGTTCC |
19 |
203 |
|
191 |
197 |
|
|
Z10354 |
4 |
AACACACCCTGGAGAACCAG |
20 |
AGCACTTCCTGTCTGACCGT |
20 |
191 |
|
205 |
229 |
|
|
Z10983 |
4 |
TCAGACTCGCATACGTGAGG |
20 |
TTGAGTGACAGCTGGGTCTG |
20 |
168 |
|
144 |
158 |
|
|
Z11250 |
4 |
TCTTTCCTCAGGCACACACA |
20 |
GTGGAAGTGACTCTGACGCA |
20 |
150 |
|
144 |
|
|
|
Z11538 |
4 |
GGCTTGAAGAACACAATGCA |
20 |
GGAGCTTTAGCTGGTAATCCC |
21 |
199 |
|
135 |
153 |
|
|
Z11566 |
4 |
TCTCCTTTTGCTCTGCCATT |
20 |
TGCACTGGCAACATTCTCTC |
20 |
187 |
|
177 |
|
|
|
Z11657 |
4 |
GTGGCCTTTCATTTCAAACG |
20 |
CTGGCGACAATAAAAGGCAT |
20 |
174 |
|
164 |
178 |
|
|
Z11873 |
4 |
GTTTTGGGGAAGCCTCAAAT |
20 |
TAATCCTCCTCCCCCAGTTT |
20 |
? |
? |
? |
|
|
|
Z11876 |
4 |
CATCAAAGCCTCAGCACAGA |
20 |
TGGAATAAGAGATTCCATGCC |
21 |
160 |
|
162 |
192 |
|
|
Z13274 |
4 |
TGGTTAGACCACTGTAGACCCC |
22 |
AGCGACAACACACTCCTGC |
19 |
218 |
|
200 |
|
|
|
Z13469 |
4 |
GAAAATAAACGAGGGCGACA |
20 |
CTGACCGCGCTGTCAGTAG |
19 |
168 |
178 |
164 |
166 |
|
|
Z13546 |
4 |
ACCGCTCTTTGGTCTGAGAA |
20 |
AATGAACTCTTTCAGACGCG |
20 |
NA |
NA |
NA |
NA |
|
|
Z13639 |
4 |
TGTTTCCCTGTGTCAGTCCA |
20 |
CCTGAAATGTTCCCGAGTGT |
20 |
112 |
|
104 |
110 |
|
|
Z13652 |
4 |
CCTCCCGATCATTTCACAGT |
20 |
GATGGAGAGGACACCCTGAA |
20 |
287 |
|
283 |
293 |
|
|
Z17278 |
4 |
TGAGCAACAGGATGTTAAATGA |
22 |
TCGGTATTTTAGTGGCCTGG |
20 |
166 |
188 |
178 |
|
|
|
Z20450 |
4 |
CCAAATCTACGCCCATGTCT |
20 |
CGACCTCTGAATCTGCCTTT |
20 |
275 |
297 |
261 |
319 |
|
|
Z20533 |
4 |
TGACCCAAATGAAGCATGAA |
20 |
CAGCTCTGTCAGCTGACTCG |
20 |
209 |
227 |
203 |
239 |
|
|
Z21319 |
4 |
GGGCTCTGAAGCTTTAGGCT |
20 |
TGAGGCAGATCAGTCTGGTG |
20 |
280 |
|
282 |
|
|
|
Z21636 |
4 |
CTCGCTCACATGAGGACTGA |
20 |
AGTCTGATTGTGGCCGAGAG |
20 |
159 |
|
152 |
161 |
|
|
Z21686 |
4 |
GTGCACAGAAACTGCTGGAA |
20 |
TGACTGAAAGTCTGCATGGG |
20 |
218 |
|
152 |
192 |
|
|
Z21743 |
4 |
GTTCGGTGGTCTGGACATCT |
20 |
TTGATGCAGTTATTCTGCGG |
20 |
151 |
|
149 |
177 |
|
|
Z22525 |
4 |
TCTGTGGCCAATCTCCTCTT |
20 |
TTATGCCAGGAAAAGAGGGA |
20 |
297 |
|
291 |
|
|
|
Z23058 |
4 |
TTCTATACAGTGTTGCCGCG |
20 |
GGCTCAGGAACTATTTGGCA |
20 |
NA |
NA |
NA |
NA |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
