Linkage Group 16
- barbara
Linkage Group 16 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z699 |
16 |
CTTGTGAACGTAGCCGTTGA |
20 |
TAAAACCACACACGAGCAGC |
20 |
209 |
|
207 |
|
|
|
Z811 |
16 |
CCATGTGGGTGGAAAAGACT |
20 |
CTGTCTTTCAGTTTTGCTTATGTG |
24 |
NA |
NA |
NA |
NA |
|
|
Z992 |
16 |
TTGACGTAGTTTGTGCGTTTG |
21 |
CAATCAGAGCAGGAGGCG |
18 |
NA |
NA |
NA |
NA |
|
|
Z1215 |
16 |
TCCTGTGATGTACAGCCTGG |
20 |
GAACCAAGCCCTCGCTTC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1276 |
16 |
GATCAACCACACTGGCTGTA |
20 |
GTCCTCTCCTGGAGACATCG |
20 |
279 |
293 |
275 |
|
|
|
Z1452 |
16 |
CAGATTAGCTTTGGCTTCGG |
20 |
GTTTTAATTCCCCTCCAACTCC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1543 |
16 |
CATGTTTGAGCACAGCCG |
18 |
TGTTACTGAGGAAATAGTTGACAAGC |
26 |
NA |
NA |
NA |
NA |
|
|
Z1642 |
16 |
ACAGGCGGTCAGGAACAGTC |
20 |
AAGGATCCGTCAGCACCGGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1786 |
16 |
ATCCGCACCGGCCTGGTGAA |
20 |
AGAGTCACCTCCGCATCTGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z1837 |
16 |
GAGGCTGGCCTCTGTCGAAA |
20 |
TGATTAATCTTTGCCCAGCACT |
22 |
NA |
NA |
NA |
NA |
|
|
Z3072 |
16 |
TTCCCGTCCGAACCAGAATC |
20 |
GGAAACCTATGTAATGTCCCCAC |
23 |
NA |
NA |
NA |
NA |
|
|
Z3104 |
16 |
TCCTTTGGAACAAGAGTGACCG |
22 |
CACCAAGCGATATGTTTCCTTT |
22 |
339 |
|
283 |
|
|
|
Z3126 |
16 |
ACCAGATTGGCAGAAACACC |
20 |
GTCTGCATCACGCTGCAC |
18 |
238 |
|
216 |
224 |
|
|
Z3633 |
16 |
GCATCCTTTTGTTTGCATGTGC |
22 |
TGAGATTTGCGCTTGTGGGA |
20 |
173 |
185 |
175 |
181 |
|
|
Z3741 |
16 |
TGCCAATAAAGCACCTCAAACA |
22 |
GACACCTAGCGGCACAGCAG |
20 |
NA |
NA |
NA |
NA |
|
|
Z4175 |
16 |
GCTGATAGCCCCTTTCAAACAC |
22 |
GTACGGGGCACCTCCATCAG |
20 |
NA |
NA |
NA |
NA |
|
|
Z4543 |
16 |
AGGCACGCTCGCTTCTGTTT |
20 |
AAGATCAACAGTAGCCCTGCGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4670 |
16 |
AGCGCTGCATACCAATGCAC |
20 |
TGGTGGGTAGAAAATGCAGCA |
21 |
139 |
|
137 |
|
|
|
Z4678 |
16 |
ACACAATGCTTTGGTATGCTGG |
22 |
GGCGAAACCAGAACACCTGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z5022 |
16 |
GCCAATGGCTTCAGTTTCCA |
20 |
TGAGCAATTGGTGGCTTACTGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z5180 |
16 |
GCGCCGCTTGATAAATAAGGG |
21 |
GGTTTACACAGCGGATGCCC |
20 |
208 |
|
202 |
206 |
Use at your |
|
Z6021 |
16 |
CTGCCCCACAGGAACATC |
18 |
TTGCCTTGAACATTTTCATCC |
21 |
173 |
191 |
169 |
|
|
|
Z6240 |
16 |
GGACCCTTTTAGTATTCCCAGG |
22 |
GAACCACTCATTTAGAGGGTGG |
22 |
273 |
279 |
239 |
245 |
|
|
Z6293 |
16 |
CAAGGAAAACGCACCGTAAT |
20 |
TTCACATCTTAATGTTGACGGG |
22 |
147 |
|
123 |
|
|
|
Z6302 |
16 |
ACCACTGTAAACCAACATCTGG |
22 |
TCATTCACAACTCCACGAGTG |
21 |
144 |
164 |
156 |
162 |
|
|
Z6322 |
16 |
GGCCACTTCCTTCTCTGCTA |
20 |
TCCACAACTGACCTTGTCATG |
21 |
170 |
|
174 |
|
|
|
Z6329 |
16 |
ACCACTGACCTCTCTCGCAT |
20 |
CCACACCCAGTCAGGGATAG |
20 |
274 |
|
244 |
|
|
|
Z6365 |
16 |
CAGACAAACATTGGCACAGG |
20 |
CGTGTGCTTACACTGTCTGACT |
22 |
248 |
|
242 |
|
|
|
Z6506 |
16 |
TTGTGACCGTGGACCGTC |
18 |
CTGTGCGCGTCAGGTCAC |
18 |
179 |
? |
165 |
? |
|
|
Z6854 |
16 |
TTGACTGTTGGGTTTTACAGTG |
22 |
ACAAGTGACCAAGGAAATGATG |
22 |
? |
|
? |
? |
|
|
Z6921 |
16 |
ACCTACTGACCAGGTTATCACC |
22 |
TTATCTTTGCACAATGGACTGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z6957 |
16 |
AGACAAAAGACGGAGGAGCA |
20 |
AGACGCGTCTGTCACTTGTG |
20 |
? |
|
? |
|
|
|
Z6984 |
16 |
TGTAAATGCATAAATTCGAGCA |
22 |
TCAGAGGGATGCTGGACAG |
19 |
? |
? |
? |
|
|
|
Z7231 |
16 |
AGCCGTAAAACCACGATGAC |
20 |
TCCTGTGGTCCATCAGTGTG |
20 |
212 |
228 |
208 |
|
|
|
Z7394 |
16 |
TGTGTAACTCGTCATTTCTCAAA |
23 |
CTAACTGTTGATGGCATGCA |
20 |
240 |
254 |
230 |
318 |
|
|
Z7956 |
16 |
CACATGTGCACCGGACTCTA |
20 |
TCTCTCCCCTGGACATCATC |
20 |
128 |
146 |
160 |
|
|
|
Z8250 |
16 |
ACACACGCAGAGACATTACCC |
21 |
TTAAAAACGTGACGCGAGC |
19 |
129 |
n |
107 |
|
|
|
Z8350 |
16 |
CGCACGCACTGCTAGGACT |
19 |
TAGATCTACTGTCCATCCAGCA |
22 |
160 |
|
146 |
152 |
|
|
Z8731 |
16 |
CACTGTTGGTTGGCATCATT |
20 |
AGCCAACAAAGAGCCTGAAA |
20 |
104 |
136 |
112 |
|
|
|
Z8819 |
16 |
AGGTTTTGACTGGCAGGAAA |
20 |
CATTTTTAGGTCCCGCAATG |
20 |
131 |
|
163 |
177 |
|
|
Z8836 |
16 |
TCAATGACAATCCTACCTGCC |
21 |
TGGCCTCTACTGAGGTCCG |
19 |
170 |
|
136 |
|
|
|
Z9138 |
16 |
TCTCTCTCCAACTCTCTGACCC |
22 |
TGTATGTGTACCGTGGACCG |
20 |
? |
|
? |
|
|
|
Z9222 |
16 |
TTCTGATCAAGCGTTGTGTTG |
21 |
AGGGCTTCTGTCAGTCCAGA |
20 |
121 |
|
113 |
|
|
|
Z9269 |
16 |
GACTTTCCAAACCACGCAAT |
20 |
GTTCCTGATTGCTCGAGCTC |
20 |
? |
|
? |
|
|
|
Z9491 |
16 |
ATGCGTTTCAGGGCTACAAC |
20 |
GACTACGTGAAATAGAGCAACATCA |
25 |
135 |
143 |
125 |
|
|
|
Z9511 |
16 |
TATGAGGCATGATGCTGAGG |
20 |
TGCTTTATGTTTCGCGCAC |
19 |
199 |
259 |
193 |
239 |
|
|
Z9520 |
16 |
CATCACCAATAATACGCGCA |
20 |
GCGTCTGACCTCATTCCTGT |
20 |
137 |
|
107 |
109 |
|
|
Z9535 |
16 |
GCACAGACGGAGTCACTGAA |
20 |
AACCTCGGCTTAACAGAGCA |
20 |
? |
|
? |
|
|
|
Z9559 |
16 |
CTGGCACTGTGGTTACCATG |
20 |
AGCTGTGCTTGTGATGAACG |
20 |
NA |
NA |
NA |
NA |
|
|
Z9677 |
16 |
AGCACTCATTCAATCCTCCG |
20 |
CAGCACTTTCACACAATGGC |
20 |
185 |
187 |
189 |
199 |
|
|
Z9685 |
16 |
CCTGCTTGTCTTGAGGGACT |
20 |
ACTTCACCCCTGATGGACTG |
20 |
218 |
|
184 |
|
|
|
Z9790 |
16 |
CTGAACAGATTGTTGGGGGT |
20 |
CTGGATTTCCCTGTGGTCAT |
20 |
223 |
|
189 |
195 |
|
|
Z9881 |
16 |
AGCTGATGTAATCATTCCCACA |
22 |
CCGCTGTCCCTTCTAGAATG |
20 |
? |
|
? |
|
|
|
Z9924 |
16 |
TTCAGGACATGCGGTTTGTA |
20 |
CATTACAAGGCCCTGCCTAA |
20 |
? |
|
? |
|
|
|
Z10036 |
16 |
GGCCTGAGACACCATACTTTTC |
22 |
GGCTGGGAGACATGAGGA |
18 |
369 |
|
291 |
425 |
|
|
Z10213 |
16 |
AGCTCCACACAGAAATGCCT |
20 |
CACCGTTGCAACTTATCGAA |
20 |
147 |
|
143 |
153 |
|
|
Z10217 |
16 |
ACAGAGCCTTTGTTCGGAGA |
20 |
TCAATCTGTCCTCCGAAACA |
20 |
144 |
|
166 |
|
|
|
Z10256 |
16 |
CAAAGAAAGCGAAGGCATGT |
20 |
TGACTGTCGAAGGAAACGTG |
20 |
128 |
|
134 |
140 |
|
|
Z10327 |
16 |
AAGTGAAAATGCACACATGCA |
21 |
CAGCTGCTGCAGAAGATCTG |
20 |
261 |
|
257 |
|
|
|
Z10632 |
16 |
GCCCTTACAAAGCCTCAGCT |
20 |
GCCTCCTGCTTCTGATGAAC |
20 |
188 |
198 |
190 |
212 |
|
|
Z10671 |
16 |
AAGCATGATTTATGCAGCATTTT |
23 |
ACAAGCCCCTCCCATTTTAC |
20 |
133 |
|
107 |
|
|
|
Z11246 |
16 |
TGCAGGACGATGTCTCTGAC |
20 |
CGTCTGGAGACCCTCTGAAG |
20 |
255 |
283 |
261 |
337 |
|
|
Z11376 |
16 |
TTTGAACTTTCATCCCCCTG |
20 |
CGCAGTCTGGGATGGAATAT |
20 |
241 |
|
231 |
|
|
|
Z11385 |
16 |
CCTCACTGCTGACAGAACCA |
20 |
GCTTGTCTGCCCTGCTAAAC |
20 |
147 |
|
151 |
|
|
|
Z11452 |
16 |
CACACTCTGTGTGCCCATTC |
20 |
CCACTCAAGCGCACATCTAA |
20 |
254 |
|
308 |
|
|
|
Z13202 |
16 |
TAAACAATGCATTGGGCTGA |
20 |
TCTGGGTAGACTAGTGCGACC |
21 |
193 |
|
171 |
|
|
|
Z13305 |
16 |
ATTCCCAAAATTTGGTTCCC |
20 |
AACTATTGGCTGCAGCAGGT |
20 |
185 |
213 |
193 |
205 |
|
|
Z13490 |
16 |
CGATGACCAACAAACACCTG |
20 |
CCATGTGTCAAACTCTTTCTGTATC |
25 |
129 |
|
127 |
|
|
|
Z13511 |
16 |
TCCAGATGTGTTTATCTGGGC |
21 |
CCGTGTGATGGATTAAAGCA |
20 |
171 |
175 |
169 |
179 |
|
|
Z13555 |
16 |
CAGTGGTGTACGCAGCATTAA |
21 |
CTAGGCATGCCAGCTTAAGG |
20 |
116 |
|
108 |
112 |
|
|
Z13925 |
16 |
TGGGAAAGCGCTCTCAGTAT |
20 |
CAGATGTTCAGTGCTCTGCTG |
21 |
? |
|
? |
? |
|
|
Z13946 |
16 |
CCAACCTCATCACTTCAGCA |
20 |
GCTTTCTAATTGCCTGTGGC |
20 |
? |
? |
? |
? |
|
|
Z14058 |
16 |
CATGGACAGCAATTTGGTTG |
20 |
GAGCGATGGGGAAGTATCAA |
20 |
? |
? |
? |
|
|
|
Z15453 |
16 |
CACGATCACCAGCGATCTAA |
20 |
GCGTCTAGCAATATCGCTCC |
20 |
? |
|
? |
|
|
|
Z17246 |
16 |
ATATCAGCAGGAGGGACGG |
19 |
TGTCTGTCTTTCTGTGATGCTT |
22 |
138 |
150 |
142 |
|
|
|
Z20177 |
16 |
TCAATCTGTCAAACTCCGCA |
20 |
CGCTTTATAGGGCTGCAGAG |
20 |
242 |
|
228 |
|
|
|
Z20404 |
16 |
CGACAGTATGTGCAAATTAAAACA |
24 |
TGTGAGCCACTTTTTCATGC |
20 |
193 |
|
195 |
|
|
|
Z20704 |
16 |
TGCTTTATAGGCCTCAGCGT |
20 |
CTCCAGCAGCTCCAGGTAAC |
20 |
123 |
|
107 |
117 |
|
|
Z21116 |
16 |
CAGTGTGATGCTCGTTCTGG |
20 |
CTGACCCTCATCCCACAATC |
20 |
168 |
|
158 |
178 |
|
|
Z21155 |
16 |
GAAGCTTGTTTGGGTTTGGA |
20 |
CCACAAAGGCGAAGACATTA |
20 |
137 |
|
157 |
|
|
Legend
Table generated Wed Oct 7 16:28:07 1998
