Linkage Group 3

Linkage Group 03 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number	Linkage Group	Forward Primer Sequence	Length	Reverse Primer Sequence	Length	AB_1 Size	AB_2 Size	In_1 Size	In_2 Size	Comments	dbSTS Accession
Z419	3	ATTATCCAGCACATGACGAGG	21	TCTCGCTCCTCACCATCAC	19	100		104	276		G40354
Z872	3	CTTAAAGCCCAGTGAGGCAC	20	ATGCCTGGTAATGAGCAGCT	20	236		228			G41425
Z963	3	ACTGGCACTTCACGCTCC	18	TCTCACACTGAGTGCTAAACGG	22	201		189	277		G41430
Z1140	3	CGCTTCAGCCTCAATCTCTC	20	TGTAGCTTTCTGGGCCTGAT	20	187		259	269		G41325
Z1183	3	CCGCGGAAGATTAATCAGAC	20	AGATTCACTCCGTGCTCCAT	20	NA	NA	NA	NA		G41336
Z1185	3	CAGCAGGAACGAGGACGTCA	20	GGGTGGGGTTAGGGCAATAG	20	NA	NA	NA	NA		G41337
Z1191	3	TCAGAACTCCAGCCACCAG	19	TGGATATACTTTATCCCTAACTGAACG	27	138		160			G41338
Z1209	3	CCTGAGCACATGTATGCAGTCG	22	CACAATCGCAGAGCAGCGCC	20	140		128			G39982
Z1401	3	TCCACTTCAGTCACGTCCTG	20	CACCATCACCGTCTGGAAG	19	239		135			G41362
Z3100	3	ACTCGCATCACAATGCTTGAGC	22	TCCTTTCAGCAGGACTGGGC	20	NA	NA	NA	NA
Z3439	3	CTGCAGCGAATGAGCAGGAA	20	TTGTGAGCTCAGGTGGCCTG	20	213	271	155
Z3725	3	ACTAAATCGCACTTCAGCAGCG	22	GGTGTCCTCACATCAGCTGCA	21	248	262	296
Z3929	3	ACCAGGTGAAGGCATACAGG	20	ATAAATCAGGCTTTAGAAATCCG	23	111		127	135
Z4161	3	ATCAGTCCTGTGATTCCCGTCC	22	CCTCAAGCGCCAGCGAGTAT	20	325	375		297	Use at your own risk	G41481
Z5033	3	CACCAGGAAGAAATCGATGCG	21	GACGTTTACCCACCAAGAACCC	22	253		277	361		G41551
Z5197	3	CCAATCTGCAAATGTCACCAGG	22	TGTGCACAGCCGTTCCTACA	20	251		171	183		G41565
Z5623	3	GGAGAATGAATGGTGACCTTGC	22	CTTCCCACCCACAGAGAGGG	20	NA	NA	NA	NA		G41592
Z6019	3	GCAGTGTCAATACTTGCTCTCG	22	ATCCTCTGAGAAACCAGACAGC	22	111		131			G41834
Z6068	3	TTGGAAAAATACAGCGAGTGG	21	CTCAGACTCGGTTCCTCTGG	20	124	130	130	134		G41609
Z6566	3	CGGAGAAACAAGACGGAAAG	20	TGTATGGGATTGGGCGATAT	20	177	181	183			G41121
Z7293	3	TGACCCCCTACTGACGTTATG	21	CCTATGCCTTCAGACTGATGC	21	260	266	256	276		G41146
Z7419	3	TGAAGTTCAAATCAGACGTCAG	22	GCTTTCATTGTGGTCAGGGT	20	218	282	286	308
Z7486	3	CGAGCAGTTACATCACAGGC	20	CACACATGTGCAGCGTTACA	20	225	229	215			G40560
Z7506	3	GTCCGTCTCGCTCTCTGATC	20	CGCAATGAGTTAAACAGTGTGA	22	190		188	206		G40564
Z7672	3	AAAGGCGCCTAAAAATAAAAGG	22	TCAGTGGCACAGAGCAGC	18	210	n	193	228		G40589
Z8208	3	CTTGCTGGAGTCAGAGTCACC	21	TCAGAACTTGGCCTTGGC	18	143	179	133	137		G40631
Z8364	3	CCAACCCTGCAGGTAACTGT	20	CAGATTCATACCTGCAGTTGTG	22	?		?	107
Z8406	3	CAAATGTCCAGTGATTACCTGG	22	GGAAACAAGGCTTGGATAAGG	21	166		156	198		G40644
Z8492	3	TCACTCACGACACCGGATTA	20	GGTGAGCAACCGAGGATTTA	20	116		114	138		G40660
Z8680	3	TCAGCCCTCTCCTAAAACGA	20	TGCTACTGCCCAACACTGAA	20	256	290	264	380		G40674
Z8681	3	CGGCAGTTCACATGTCAAAC	20	GGCGAAAAACTGACATCCAT	20	283		297			G40675
Z9011	3	AGTGCAGGACTGCAGCACTG	20	CAGCACCCATAGACCAAACA	20	159		137	153		G41835
Z9016	3	CTCTGATTTGCTCTCCCTGG	20	ACTGCATAAGAAAGCAAAAGCC	22	128	132	120	130		G41836
Z9257	3	GCTGAGGCATTCCAAATGTT	20	GCTGGACAAATCTCACAATTG	21	126		114	130
Z9356	3	CTGCGGGACTCTGCTATTTC	20	CTTCATGTCTGAGCAGCGC	19	127	?	111			G40774
Z9392	3	GCCGACAGATGTATTGCATG	20	CTCCTTTCCTGTAAGCGTGC	20	102	140	102			G40785
Z9408	3	CTCCAGCTCCTCCATCTCAC	20	TGCCACTGTCACATTTGGAT	20	169		163	173		G41648
Z9463	3	GTTGGTGGAGGGGAGAGAAT	20	CAAAGATAAAGCAGGGGCAG	20	150	154	164			G41650
Z9523	3	AAACCTGTAATGGGACAGCC	20	ACTGCTTTGGCAGCTGTGC	19	?		?	?		G40806
Z9662	3	TCATCTCCAACAAAACACGC	20	GGGACAGACAGGGGAAGATT	20	120		100			G40820
Z9843	3	CATGCCAGGAGTGACATGAG	20	CTATCTGCACAGCTGTCCCA	20	184	200	156	164		G40847
Z9964	3	TGGCTGTCTATGAGGTATGGC	21	GACGACAGAACACAGCAACG	20	223	229	195	283		G40872
Z10067	3	CTATGGTGCAGCATGTGCTC	20	GAGGGAATGTGTGCTGGACT	20	246		230	232		G41680
Z10538	3	CATGTGGACAGCTTGATCATT	21	AGATGAATGTGCGTGAGCAG	20	178		118	130		G41700
Z10735	3	CAGGTGCTCCAGGTCTTCTC	20	GTTCACCATTGTGCATCTGC	20	196		182			G39824
Z10805	3	GCCACCTAAAGCACTTTCCA	20	CTTGTTGGCTCACTTTTGCA	20	213		215	255		G39831
Z10927	3	GCAGCAGGTCAGTCAGAACA	20	TGTCATCAGCCAATCAGAGC	20	113		141	155		G39844
Z10934	3	TGCATTTCTATTTCCCCCTG	20	GGCGATGTGACATTTTATTTG	21	243	287	299	339		G39846
Z10964	3	GTCTCTCCTGATACGCCCTG	20	CTGACCTAAGGAATGATGCTGA	22	149	185	149	163		G39852
Z11015	3	GTGCCGCTTGGTAGAGAGAG	20	AGATTTAGGGAGCTCTCGGC	20	116	156	124	150		G39857
Z11227	3	CAGTCATTCCATACACCTGATCA	23	TCTCTTAATTGGTGCAGGGG	20	156		164			G39878
Z11244	3	CATTGGTGCAGATGGAACAG	20	GTGTGTTCCCCTCAGCTGAC	20	?		?	?		G39881
Z13387	3	AGTTCAGTCACCCGGTTCAC	20	TGGAGGAGGAGGCTGAGTAA	20	252		240	244		G40017
Z15457	3	TCGCCCCATTATTTTATACACC	22	CTTTCTTCATTTCCTGTCACCC	22	116	118	112	200		G41607
Z15460	3	TCATCACATTTACATCCCAGTG	22	AGAGTGAGAACCTCAGCAACG	21						G40125
Z15479	3	GCCAAACATTCCAGCTGATT	20	AGCCGGACTCAAATGCAG	18	163		159			G40126
Z17222	3	TACATAAAGGATCATTGCACGC	22	TTTACAGTTGAAAGGGCATGC	21	241	285	281			G40136
Z17253	3	CACCCATGTATGCAGATCTCC	21	TCTTCAGGCCTCACCACAG	19	137		92	114
Z20058	3	GGTGTTTCGTCCACTGTTGA	20	TAACTTTTCAAACGGGACGG	20	96		98	106		G40153
Z20073	3	TGTGGGAATGTCGAAGTTGA	20	ACACCTGTGGAGGCATCAC	19	269		237			G41725
Z20317	3	GACTCTGAGAACCAGCGGAG	20	TTTCATTGATTGAGCGCTTG	20	181	201	163			G40167
Z20616	3	GGTGTTCATGAGCCCAAACT	20	CGGAGCTTCATCCACCATAC	20	217		223			G40188
Z20966	3	CACCCTTTCTTCTCAGGCTG	20	ATTCGGTCTGTTCTGGTGCT	20	147		109	113		G40213
Z21679	3	CCTGCCCTCAAATTTGTGTT	20	GCCTTCCATGAGACCCATTA	20	211	259	201	227		G41744
Z21827	3	GAGACAACCGGGGTCAACTA	20	CAGACAGCACAACAGGATACG	21	NA	NA	NA	NA		G39403
Z22516	3	GTCCCGACATGCTGGTTAGT	20	TGAGGAGCTGAAATCTTTCTCA	22	157		155	183		G40324
Z22555	3	CAAATCTGATCTGGGTGGCT	20	GAGGAGACCGAAACACTTGC	20	NA	NA	NA	NA		G39491
GOF14	3	GCTCTTCAACATGACTCATTGTG	20	TTACTGGCATTGGTTAAACGG	21	166*	NA	NA	NA	"Goff, et al., 1992"

Legend

Table generated Wed Oct 7 16:28:07 1998