Linkage Group 23
Linkage Group 23 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z3077B |
23 |
TTAGCATAAGCAGCAGCCCTG |
21 |
AGCGTACAGCCGGGGTTAGA |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z130 |
23 |
ACACGCTGGAGAGCCAAC |
18 |
CCAGAACCCACCTGGGAC |
18 |
NA |
NA |
NA |
NA |
|
|
Z176 |
23 |
CTCCAGAACAGGTTAGACACACC |
23 |
CTGAACACCTCGAACCTTTACC |
22 |
NA |
NA |
NA |
NA |
|
|
Z342 |
23 |
CATTGAGTTTAGACCCCCACA |
21 |
TCACTTCTGCTTTATAAGGCACC |
23 |
169 |
155 |
189 |
|
|
|
Z643 |
23 |
AGGCTGGGCTATAATGCTGA |
20 |
TAACGAGTCTGTGTTTCGCG |
20 |
NA |
NA |
NA |
NA |
|
|
Z720 |
23 |
ACTCTCAACATGAAGTGCTTTCC |
23 |
ACAGGGAATGAGCTGAGAACA |
21 |
NA |
NA |
NA |
NA |
|
|
Z1348 |
23 |
GGGTAGTCAATCTGTGCATCTC |
22 |
CTCACTGGCCACGTCCTC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1403 |
23 |
CGCAGGTATTTACAGCTCTGC |
21 |
GATCTCTTTTTTCCATGAGTA |
21 |
NA |
NA |
NA |
NA |
|
|
Z1432 |
23 |
ATGGAGACGAGGAGCATCTTGG |
22 |
CAAGGTGCTCAGTGGTGTCACA |
22 |
248 |
|
240 |
440 |
Use at your |
|
Z1487 |
23 |
CTACATCACAGGAAGCCAATG |
21 |
TTACTCGTGTAGTTCACCCGC |
21 |
NA |
NA |
NA |
NA |
|
|
Z1498 |
23 |
ATGAATGGAAGTCTATGTAATGTCC |
25 |
ATGCTGAGTCTGCGCTTCTGC |
21 |
NA |
NA |
NA |
NA |
Use at your |
|
Z1579 |
23 |
CTGCCTGCCTGCATATGTGC |
20 |
GACCAGTGGACAGCAACCCC |
20 |
NA |
NA |
NA |
NA |
|
|
Z1665 |
23 |
AAAAGCCCAGAGCAGTTCTGG |
21 |
GAAAGGATCATGGGTGCGTAG |
21 |
NA |
NA |
NA |
NA |
|
|
Z1668 |
23 |
TCAGAACGCTGAGTTTGACCC |
21 |
CTGAGCCTCCAACAATGAAGG |
21 |
NA |
NA |
NA |
NA |
|
|
Z1773 |
23 |
CATGATGCTGCCCATCGTCG |
20 |
ATTCCTCATGTGGCGACCAA |
20 |
NA |
NA |
NA |
NA |
|
|
Z3157 |
23 |
GAAGGGGTCCTGGATTTGTTCA |
22 |
GACACAAGTCATTGGGCAGGG |
21 |
113 |
127 |
109 |
|
|
|
Z3525 |
23 |
TTCTCTGCGGGGTGGTTTTC |
20 |
TGCTTTTTCAGGATTGCAGCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z3532 |
23 |
AGCCATATCGCACTGCTACTCG |
22 |
CCTCCCTGAGCTCCCGAAAT |
20 |
264 |
|
296 |
|
|
|
Z3680 |
23 |
CAGCTAGAAGGGCATCCTCTGC |
22 |
TGGGGAAAAAAGGGAAACGG |
20 |
156 |
|
168 |
188 |
|
|
Z3712 |
23 |
TGCTGTTTCCCTGAGACAGTGG |
22 |
AACACGAGATCGGCCTGTTTG |
21 |
147 |
|
137 |
181 |
|
|
Z3794 |
23 |
CTGAAGCAGATGGCCCAGAC |
20 |
ACCCTCATTCACAATCCTGTGC |
22 |
209 |
|
199 |
211 |
|
|
Z3852 |
23 |
CATATGGGGCTCCATCTCATG |
21 |
AAGCTAAAGCAGTGTGCGGTCC |
22 |
155 |
|
145 |
149 |
|
|
Z4003 |
23 |
AGCAGGGGGATTCCTGCATT |
20 |
AAGTTGGCCAATATGGTCTGCG |
22 |
225 |
247 |
197 |
|
|
|
Z4075 |
23 |
CTACCCGCACCACTGTGACG |
20 |
CGCCATCGGTACATCCACAA |
20 |
304 |
|
292 |
300 |
|
|
Z4120 |
23 |
TACAGCTGCTGCGTGATGAGC |
21 |
TCTGTAAGGAGTGCCTCAGGGC |
22 |
139 |
145 |
141 |
143 |
|
|
Z4421 |
23 |
TACTAATGGCCCAGGGCGAG |
20 |
ACACCCTCCTTCACACCGGA |
20 |
NA |
NA |
NA |
NA |
|
|
Z4777 |
23 |
CCAGAGACCTGGGTTCTATCC |
21 |
TTACATTCATGTCAGGGTCTGG |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5141 |
23 |
GGACAGTCTTGCCTGACAGCTG |
22 |
CAAGTGCTGCCATCAGCATACA |
22 |
NA |
NA |
NA |
NA |
|
|
Z5160 |
23 |
AAGCGCTTTGAGTGCCCAGA |
20 |
TTTCCTGACCCGCAGTCATATG |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5265 |
23 |
CTAACCACAGCTGCAACAACCG |
22 |
AGTGTCCGTGCAATCAGAGGC |
21 |
177 |
|
159 |
185 |
|
|
Z5526 |
23 |
AGCTGCCAATCAAAGTCTGCG |
21 |
CCCTTCACCTGCCATTTTGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z5683 |
23 |
CGGATATTGGATTATCGGCTCA |
22 |
AACGATCTGCATGTGCGAGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z6017 |
23 |
ATAAGTTGGCCGGTTCATTG |
20 |
GACTGAAACCAGCGACCTTC |
20 |
241 |
|
253 |
283 |
|
|
Z6142 |
23 |
GCAGAGAGAGGGGAAGGATT |
20 |
CAAAATTAAGCAGCAATGATGA |
22 |
136 |
150 |
132 |
152 |
|
|
Z6376 |
23 |
TGGAAACCTATGTAATGTCCCC |
22 |
TGAGGCCAAACAGCACTTC |
19 |
151 |
|
105 |
131 |
|
|
Z6742 |
23 |
GGAAACAGTTGTGGGCTGTT |
20 |
TTGAGTGTGTATGGCATGCA |
20 |
100 |
|
80 |
104 |
|
|
Z6952 |
23 |
ACACGCTGGAGAGCCAAC |
18 |
CTGAAGGCAGCCAGGTACTC |
20 |
? |
|
? |
? |
|
|
Z7243 |
23 |
TGACTCACCTGCTACAATCTGC |
22 |
GAGTCTCCATTTCTGCTGCC |
20 |
204 |
230 |
218 |
|
|
|
Z7550 |
23 |
CGATCCCTTCGTTTGTTGTT |
20 |
TGCTCAAGTCTTTTCCTCCTG |
21 |
108 |
172 |
98 |
124 |
|
|
Z7590 |
23 |
CACTTTGAACTTCCTCCTCCC |
21 |
ACGTGATCAAAAAGCAACTCTC |
22 |
NA |
NA |
NA |
NA |
|
|
Z7655 |
23 |
TATTCTGGGAAGCGCTGC |
18 |
CATCTCCCTTTACTGCTTCTGC |
22 |
221 |
|
197 |
233 |
|
|
Z7890 |
23 |
TCACCGCCTTATTCTGTGAA |
20 |
CGAGAAAAGGGTAAAAATGCC |
21 |
198 |
|
204 |
214 |
|
|
Z7973 |
23 |
GCACTTTCGTTTTGACAGCA |
20 |
CAATTTTGCCCGAACTGTTT |
20 |
245 |
|
243 |
249 |
|
|
Z7984 |
23 |
TAGGTCAACGCAGAATGTGTG |
21 |
AACTCGCCTTGCCTAAATACA |
21 |
94 |
|
74 |
88 |
|
|
Z8362 |
23 |
TGGCTGTAATGTGCGCATAT |
20 |
GAGACCGCTGCTGGAGATAC |
20 |
115 |
|
107 |
n |
|
|
Z8784 |
23 |
CAATGCGCTTATTTCACACG |
20 |
ATGCGGTTAAAAGGATTGCA |
20 |
237 |
269 |
231 |
235 |
|
|
Z8945 |
23 |
GCCCGCCTTTGTCCTATGT |
19 |
ACAGTCTTGCCGAGGAAGAC |
20 |
403 |
|
401 |
405 |
|
|
Z9129 |
23 |
CCATTGCAAAACAGTTTCCC |
20 |
ATGCTCAGTCTGCCTGTGTG |
20 |
117 |
|
103 |
113 |
|
|
Z9351 |
23 |
TCTGGTGAAATACTGCGCTG |
20 |
CACACACCCTCCCTCAGTTT |
20 |
240 |
|
234 |
|
|
|
Z9573 |
23 |
TCCAGCCAGTTTGATCTTCA |
20 |
TGTGTGAAGAGGGCTCTGTG |
20 |
? |
? |
? |
? |
|
|
Z10061 |
23 |
TTTAGGGCAACCGATGAACT |
20 |
TCATGCATCCGCTAACTCAC |
20 |
226 |
234 |
222 |
224 |
|
|
Z10161 |
23 |
TTAACCCAACGAGATACCGC |
20 |
CGTTTTCTTGGGGCACTTAA |
20 |
244 |
260 |
220 |
276 |
|
|
Z10949 |
23 |
TGGAATCTGCTGCTGTGAAC |
20 |
CGCAGTTCAACTCTGAAACA |
20 |
99 |
109 |
89 |
95 |
|
|
Z11020 |
23 |
TGCTAACAAACGTCACAGCA |
20 |
GTGGTATTTCCACAAACGCC |
20 |
218 |
|
152 |
178 |
|
|
Z11391 |
23 |
ACTGAACCAACCCCGTACAA |
20 |
TCAGTTGACAGGTTTGTCTCTGA |
23 |
135 |
147 |
111 |
125 |
|
|
Z11407 |
23 |
GCAGACTGGAGGAGTTCTGG |
20 |
ATATAGAGGGTTGGAGGGGG |
20 |
239 |
|
181 |
219 |
|
|
Z11495 |
23 |
CTCCAAAAACACACCGGACT |
20 |
CAGATGAACAGAGCCGACAA |
20 |
287 |
|
235 |
n |
|
|
Z11902 |
23 |
TTGATAGGTCAGTCAGGGCC |
20 |
AGATCCACAGGTTACGCCTG |
20 |
208 |
228 |
158 |
308 |
|
|
Z13236 |
23 |
GACTTTTGCCAGAATTCAATCC |
22 |
AAGCTACCTGTGCGCCAC |
18 |
125 |
|
117 |
|
|
|
Z13363 |
23 |
CCTGTTTGTGTCTCCAGTGTG |
21 |
CCTGTCACTGTTTTTCCTGAA |
21 |
135 |
261 |
153 |
299 |
|
|
Z13424 |
23 |
CATGGCAAACTGTGTGAAGG |
20 |
CAAGCCAGGAAGAGAGGTTG |
20 |
267 |
n |
191 |
225 |
|
|
Z13535 |
23 |
CAGACACACTTGGTGGGATG |
20 |
AACCCAGGCCATTCATCTC |
19 |
NA |
NA |
NA |
NA |
|
|
Z13781 |
23 |
CAAATAATCCCCACTGGGTG |
20 |
TATGGTCTGCGTTGTCTTGG |
20 |
243 |
265 |
221 |
|
|
|
Z14008 |
23 |
CTTCAGCCGTGGAGAAAGAC |
20 |
CTGAACATTCAAGCGTTCGA |
20 |
? |
? |
? |
? |
|
|
Z15422 |
23 |
TGAAAGTGGACATATCCAGCC |
21 |
CGCTGTCCTTCTTTCCACTC |
20 |
128 |
168 |
94 |
122 |
|
|
Z20039 |
23 |
GGAGGGCATGTGTCCTAAAA |
20 |
CAGGTCAGGTCATTCAAGCA |
20 |
183 |
|
147 |
161 |
|
|
Z20133 |
23 |
AGCTTCCGCAGAGACTTCAG |
20 |
CTCCTGTTACAGCATGCCAA |
20 |
? |
? |
? |
? |
|
|
Z20492 |
23 |
ATGAACAGTGTGCGAGATGC |
20 |
CTCGCAGACTTCAGATGCTG |
20 |
159 |
|
119 |
137 |
|
|
Z20643 |
23 |
GTCCAGAAGGATGGAGGACA |
20 |
AAGTCTCCTTTGATCGCGC |
19 |
293 |
|
291 |
|
|
|
Z20725 |
23 |
TGAAACACGAATCCAAAATCC |
21 |
TGCGCTCCACTACAGCTTTA |
20 |
249 |
277 |
247 |
279 |
|
|
Z20895 |
23 |
CAACACAACCCACAGTCAGG |
20 |
CCCACCCCCTACTCAAAAA |
19 |
212 |
|
296 |
|
|
|
Z22095 |
23 |
CAGTGGCTTGCTTGTTTGAA |
20 |
CTCCTCTTGTCCGTTTCAGC |
20 |
213 |
|
211 |
|
|
|
Z22238 |
23 |
CCCATTGTCAACAGCATGAT |
20 |
GTTTGCCGGTTTGTTGTTTT |
20 |
206 |
208 |
204 |
|
|
|
Z22256 |
23 |
TTTGCGTCTCACAACAGGAG |
20 |
AGGAGGGCGTCATAACACAC |
20 |
228 |
240 |
236 |
296 |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
