Linkage Group 5
Linkage Group 05 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z3763B |
5 |
CCAATTAACGGAAGTGAACCGC |
22 |
GCACTGGATCAGTCCCGCTT |
20 |
190 |
|
180 |
|
|
|
Z13 |
5 |
CACGTGCTGATGCAGGAC |
18 |
GATGACAGCCAATCAGAGCA |
20 |
144 |
|
150 |
|
|
|
Z379 |
5 |
AGCCTTTCACTGGCCCTATT |
20 |
CAAGGTGGAGTAAAAATCCTGC |
22 |
260 |
|
252 |
|
|
|
Z647 |
5 |
GTGAGAGGTACGGCAGGAGA |
20 |
AAACAACCCTGCATCCACTC |
20 |
249 |
|
283 |
|
|
|
Z896 |
5 |
ACAACCACAGCATGACCTCA |
20 |
ACAAGTGCTGCAGAAGATGTATG |
23 |
NA |
NA |
NA |
NA |
|
|
Z1167 |
5 |
TCCCTTTGTAACATCGGCTC |
20 |
AAGCCCCGACTACTGTCTGA |
20 |
179 |
|
171 |
|
|
|
Z1202 |
5 |
GTCAGGACCATACCCAGAGC |
20 |
CAGCGACTGACGGTTCTGT |
19 |
NA |
NA |
NA |
NA |
|
|
Z1390 |
5 |
TGAGATTTGAAAAGAGGTTCTGC |
23 |
GTTGTGTATGTTACTTCAGCAGTGG |
25 |
NA |
NA |
NA |
NA |
|
|
Z1419 |
5 |
TGGTGGACGAGGAGAAGC |
18 |
ATCTAACAGGTGTCCGGTGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z1454 |
5 |
TTGGAGACTAGAAGCGGGATGA |
22 |
TTTACTGTCATCACGGCAAAGA |
22 |
NA |
NA |
NA |
NA |
|
|
Z1492 |
5 |
GAGCAGCCACTCAGGTGAG |
19 |
AGATACTGCTGGAGGGCTCA |
20 |
246 |
|
214 |
|
|
|
Z1677 |
5 |
CCGTGAGAGACGGAGATCATG |
21 |
GACAGGTCACACGGATCAAACG |
22 |
NA |
NA |
NA |
NA |
|
|
Z1813 |
5 |
GGCGCTCTCTACTGGCCAAA |
20 |
TCAGCAGGGCCAGTTCACAT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1842 |
5 |
AGCACCCGGAGGAAACCAAT |
20 |
AGCCAAACTCTCCCAACAGCC |
21 |
196 |
|
198 |
|
Use at your |
|
Z3060 |
5 |
GCCAACATCCTGCAGATTTTAA |
22 |
CAAACCTGGAGGACCAATGTCC |
22 |
194 |
|
164 |
n |
|
|
Z3193 |
5 |
CAAGGCATACCATGAGGGAAGG |
22 |
TTGTCATCCGTTATGCCCTCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z3334 |
5 |
AACAGGGGGCTAGCAATTCT |
20 |
TGCACTTTTGAATGACGACA |
20 |
144 |
|
150 |
|
|
|
Z3516 |
5 |
GCACATCAGCTCCTGTGAGAGG |
22 |
TTCGCACATGCTAAAACACACG |
22 |
107 |
|
105 |
|
|
|
Z3804 |
5 |
CACGTGCTCAGAGCTCCAGC |
20 |
GTGAAGCGCGTGCACATAGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z3863 |
5 |
ATGCAAGCATAGATCCGACACA |
22 |
TGTCGGATCGATGCTTGCAT |
20 |
171 |
|
181 |
191 |
|
|
Z3902 |
5 |
GCCACCATGCCACCACATAA |
20 |
CAGGCGAGCCTTGGAAAGAA |
20 |
215 |
217 |
191 |
209 |
|
|
Z4246 |
5 |
CCAGCACCTTGTTGAACCTGG |
21 |
GCCGGATTTCCTGGAGGTCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z4299 |
5 |
AGGAATGCGCTATGGGACGA |
20 |
CACATCTGCCACTGAACCGG |
20 |
308 |
|
202 |
206 |
|
|
Z4348 |
5 |
GTCCCATGTTTAGCAATGCCG |
21 |
ACACCCTCCTGAGTTCCTCCA |
21 |
NA |
NA |
NA |
NA |
|
|
Z4760 |
5 |
AATGTCAAGGACGCATGGCA |
20 |
CAAAGACCCACACGAATGAACG |
22 |
253 |
|
271 |
|
|
|
Z5208 |
5 |
CCAAGCAACTTGAAATTTGCCA |
22 |
TGCTGTAACCACTGAGGTTGCC |
22 |
341 |
351 |
347 |
359 |
Use at your |
|
Z5260 |
5 |
CGGCGTGATGAGTGCAAAAC |
20 |
CGGCTGTTTGTGTCAGAGTTGC |
22 |
232 |
|
230 |
|
|
|
Z5473 |
5 |
GTCAAGACCAGCAAACCCAGTG |
22 |
TTTGCAAACACTTGATGGGGA |
21 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5538 |
5 |
TCAGCCACATTAGGGGAAAGC |
22 |
GCCATCCATGTTGGCTGTAGG |
21 |
NA |
NA |
NA |
NA |
|
|
Z5552 |
5 |
AAATGCTGTGCACCGTGTATGC |
22 |
ACCCTGGGTATTTTGAGCTGAA |
22 |
231 |
|
235 |
|
|
|
Z6094 |
5 |
TACAGATGGGGCCAGCAT |
18 |
ACCTCTCTGCCCTTCACAGA |
20 |
179 |
|
173 |
|
|
|
Z6132 |
5 |
GCCATGCATATTTACATCAGG |
21 |
ACAGGTGTCAGATCAGCAGTG |
21 |
93 |
97 |
109 |
119 |
|
|
Z6323 |
5 |
TTTGCACTTGAAAGGGCTTT |
20 |
CCTTGGGTACACTTGGCATT |
20 |
155 |
|
113 |
167 |
|
|
Z6371 |
5 |
CTGCGTATACATTGAGTGGCT |
21 |
GAGAGCGCACCTGTACTGG |
19 |
217 |
|
131 |
|
|
|
Z6614 |
5 |
AGCGCTTAGATCAGTTTAACAG |
22 |
GTGTGCTGGAAAGCTGTGAA |
20 |
193 |
217 |
197 |
|
|
|
Z6727 |
5 |
TGGCCACATTTATCTCGTAGG |
21 |
ATGTGACCACTGAGTGGGAA |
20 |
291 |
? |
319 |
|
|
|
Z6803 |
5 |
CTGCTGTTGTCGGAAAAACA |
20 |
TCACCCAAAACTGGTCATCA |
20 |
220 |
|
174 |
228 |
|
|
Z6880 |
5 |
TTGAAATGTCACCGTTGCAT |
20 |
ATCATCAGCATGGTGCTCAA |
20 |
145 |
|
125 |
127 |
|
|
Z6916 |
5 |
TCTGTGCCTGAGTCTTGTGC |
20 |
TCTCAGAACTGCTGAGAATGAC |
22 |
? |
|
? |
? |
|
|
Z6981 |
5 |
CTGTGTCCGATAAACAGCACA |
21 |
TCACCCTCTACGTCTGTCTGC |
21 |
275 |
|
301 |
|
|
|
Z7121 |
5 |
CTTGCCTGATTGGTTCATCC |
20 |
CCAACTCAGGGGAGTGTTTC |
20 |
228 |
|
346 |
|
|
|
Z7223 |
5 |
TCATGAGCCACTGGCATTTA |
20 |
CATGACACATGTGATTGAGGG |
21 |
202 |
206 |
146 |
156 |
|
|
Z7226 |
5 |
GCAGGTGAAGCGCTTTATTC |
20 |
ACAGAGTACTGAGCGCATGTG |
21 |
241 |
|
233 |
|
|
|
Z7257 |
5 |
GGCAAAGTAATGGAGCCAAA |
20 |
CCAAACTCTGTTTTGTGCCG |
20 |
242 |
|
236 |
|
|
|
Z7291 |
5 |
CACTGTGACTGGGAAACACAG |
21 |
TCAAAAACATCACCATTCGTG |
21 |
100 |
138 |
166 |
|
|
|
Z7313 |
5 |
TGGGCTCTGCTCATCTCC |
18 |
GCAGCACGAGATGCGAAT |
18 |
157 |
|
117 |
|
|
|
Z7315 |
5 |
CGTCTGAGTTTTGCTTCTGCT |
21 |
TTTGCATGTTTATGCCGAGA |
20 |
257 |
|
247 |
|
|
|
Z7318 |
5 |
CTGCAGATGCATCCAAACTC |
20 |
TGTTTGGAAAGTGGAGGAGG |
20 |
215 |
|
203 |
|
|
|
Z7339 |
5 |
TGGAGTCCTGGTGGGTTTAA |
20 |
GGCATAAGCAGCATGTCAAA |
20 |
257 |
|
239 |
|
|
|
Z7351 |
5 |
CTCCGGTCCAGTTTGCTTTA |
20 |
TCGTTTTGACATCAAGGTGC |
20 |
225 |
|
235 |
|
|
|
Z7428 |
5 |
ATTGGGTGGTTGTGCATTCT |
20 |
CTGTCCAATCTCGCTGTCAC |
20 |
200 |
|
172 |
|
|
|
Z7685 |
5 |
AGACATCAGCATTCGGGC |
18 |
GGGCTCCTTTTATGCTTATGG |
21 |
205 |
|
183 |
|
|
|
Z7824 |
5 |
CTGGTCCTGAGGGATGGC |
18 |
TGATGAATGAAGGCGGTGT |
19 |
125 |
|
115 |
129 |
|
|
Z7977 |
5 |
CATTTGTGCCACATGTCCAG |
20 |
TATGTGCGCATTCACACTCA |
20 |
245 |
|
249 |
n |
|
|
Z8003 |
5 |
TGGGAAAAGGGATCATATGG |
20 |
CAACAGGGAAAATGCTCACA |
20 |
217 |
|
211 |
|
|
|
Z8122 |
5 |
CTCATGGCAGCCCACTATTT |
20 |
TTGTCTGCAGGTCGTGTCTC |
20 |
263 |
|
255 |
269 |
|
|
Z8444 |
5 |
ACACAGCCTGTCAGTTGTGC |
20 |
GCCAATGGATATGGATACGG |
20 |
239 |
|
229 |
|
|
|
Z8921 |
5 |
GCATGTGCCTGATTGCAG |
18 |
ATGCACAGAACTTTGTGCCA |
20 |
105 |
111 |
123 |
|
|
|
Z9022 |
5 |
AGACGCCATCGATAAAGGC |
19 |
AGAAGGGGGGATCAGACACT |
20 |
101 |
|
151 |
|
|
|
Z9028 |
5 |
CTCCCAGCTGTAAAACCAGG |
20 |
ATGGCAGTGAGGCTTTATGG |
20 |
110 |
|
102 |
108 |
|
|
Z9106 |
5 |
GGCCATGATGGAGTGAAGTT |
20 |
GAAAGCGCATACCTGTGTGA |
20 |
147 |
|
141 |
149 |
|
|
Z9109 |
5 |
AGCAGATCATATTAATGCGCC |
21 |
TGCAGTTCAGGCCTCCTC |
18 |
142 |
|
136 |
166 |
|
|
Z9185 |
5 |
GTGTGGAGAGTTGGATTCATCA |
22 |
ACCCGTCCACAGCAGTGT |
18 |
144 |
|
150 |
|
|
|
Z9345 |
5 |
TCAGCTGACTGATCCCACAC |
20 |
CTGTGTTTTGATGGGAGGGT |
20 |
173 |
|
163 |
165 |
|
|
Z9419 |
5 |
AAAACCAAGGGGTTGCTTCT |
20 |
AATTTCGTTCTGCACAGCCT |
20 |
263 |
|
277 |
|
|
|
Z9435 |
5 |
GGCAGAACCGAGCCATAATA |
20 |
CAGTAACGGGAAGCTTCGAG |
20 |
241 |
|
279 |
|
|
|
Z9568 |
5 |
ATCTAGTGGCGCCAAATGAC |
20 |
TCGACAAGAACTTGATTTGCA |
21 |
? |
|
? |
? |
|
|
Z9815 |
5 |
CCAAGCCACTGAAACTGACA |
20 |
TCTGAGCAATTAATCTGAGCAA |
22 |
214 |
|
234 |
290 |
|
|
Z9856 |
5 |
TTGCTTGTTTACATGGCTGC |
20 |
GCCAGACTGTGACCAACTGA |
20 |
131 |
195 |
141 |
|
|
|
Z9871 |
5 |
TGTGAATCCATGGGAATGAA |
20 |
CCACATCTGCCATGAAAATG |
20 |
198 |
|
270 |
320 |
|
|
Z9969 |
5 |
TCTTTTTCCCACTGTACCGG |
20 |
CTTTATTCCCCTGCAGACGG |
20 |
109 |
|
87 |
|
|
|
Z10456 |
5 |
GTGGATGACCACTGAGCAAG |
20 |
ACCCTCAGCTGCTCTCTGAG |
20 |
127 |
|
143 |
|
|
|
Z10484 |
5 |
AGCGTGACCGACCTCAAC |
18 |
ACTGGGCCTGAGTGTTTGAT |
20 |
244 |
|
186 |
|
|
|
Z10517 |
5 |
TGGTGGGTACCTTAATCCCA |
20 |
GGTTGGCAATCACAAACACA |
20 |
238 |
|
208 |
|
|
|
Z10663 |
5 |
CTTCGCTCAGCAGCTCTTTT |
20 |
GTGGAGACGTCAGCAGATGA |
20 |
205 |
|
195 |
|
|
|
Z10665 |
5 |
GATCCCAGAAGGAACAACGA |
20 |
ATTACAGGTTGGTGGTGGGA |
20 |
102 |
|
96 |
|
|
|
Z10807 |
5 |
TTTCTCATGCCGCTCTTTTT |
20 |
GAAGAGTTATCGCTGTCGGC |
20 |
212 |
214 |
218 |
258 |
|
|
Z10827 |
5 |
CGCCACTTCACACAGTGTTT |
20 |
AACTCGGCCTCTGTTACAGC |
20 |
202 |
|
220 |
|
|
|
Z11311 |
5 |
CAGCTGACCGTTTACAGTGG |
20 |
AGCGGCTCCTTTATTAGGAG |
20 |
221 |
|
219 |
|
|
|
Z11349 |
5 |
CCTGCTCCCATCATAAGGAA |
20 |
CCGCTCTGAATGATAGCAGA |
20 |
138 |
|
128 |
|
|
|
Z11496 |
5 |
GAGCACAATAAAAGTCCCGC |
20 |
TGCTTCAGAAAAGCACATGG |
20 |
264 |
280 |
250 |
254 |
|
|
Z11632 |
5 |
GCCTGTGATAAAAGCCAGGA |
20 |
TACTGGTGCCCTGCTCTACC |
20 |
209 |
|
199 |
211 |
|
|
Z13279 |
5 |
CTCCCTAAGCATGATGCACA |
20 |
CTGGTCTTCCACGTTGGG |
18 |
256 |
|
240 |
|
|
|
Z13304 |
5 |
TTAACGATGCCACCTGATCA |
20 |
TTCTTTTGGTGCAGATCGTG |
20 |
296 |
|
326 |
|
|
|
Z13442 |
5 |
TCCCCACATTAAACATGGGT |
20 |
TCAGTTTCACGTCAGCCATC |
20 |
? |
|
? |
|
|
|
Z13641 |
5 |
CGGCATATGTATGTGCTTGG |
20 |
CTGACGTCTCTCTCCCAAGG |
20 |
237 |
|
239 |
|
|
|
Z13833 |
5 |
AACCTGCCAGAGGGGTTACT |
20 |
TCAACAGATGGCTTCAGTGC |
20 |
? |
|
? |
|
|
|
Z13866 |
5 |
TGAAACGCTTTGCAAGAATG |
20 |
TTGTGGGACTTGGTGAGGAT |
20 |
205 |
|
201 |
|
|
|
Z13883 |
5 |
CCTCCGAGACTGATGAGCTC |
20 |
CTCTGGATCCTCAGCAGGTC |
20 |
? |
|
? |
? |
|
|
Z14069 |
5 |
ATATCAGCGCTGCTGTTGTG |
20 |
CTGGAGGAGCTCCTGAACAC |
20 |
? |
|
? |
|
|
|
Z14077 |
5 |
CTGTAGCCTGCAGTGTTGGA |
20 |
CACCAGAGGGTCGTTTGTTT |
20 |
? |
|
? |
? |
|
|
Z14143 |
5 |
TAGCACCCTCAGGCAGAGTT |
20 |
AGACATTTCCCTCACACGCT |
20 |
142 |
170 |
166 |
182 |
|
|
Z15414 |
5 |
ACAGGAACATCTCCTTCCACA |
21 |
ATTTGTCCGACGGGTCACTA |
20 |
202 |
|
130 |
212 |
|
|
Z15424 |
5 |
GACCTTGTCCCTTTCTCGTC |
20 |
TTGTTGGGAACAGGGAAGAG |
20 |
273 |
|
279 |
|
|
|
Z20148 |
5 |
CATCTGCAGACGGACATCAC |
20 |
CAGGACGGCCTGGACTATAA |
20 |
245 |
|
219 |
231 |
|
|
Z20480 |
5 |
CCCTCTCTGCACAGCTGAG |
19 |
TCCCTCTGGCTGGTGTCC |
18 |
271 |
|
135 |
251 |
|
|
Z20915 |
5 |
CCTGCCCTCTGCAGAAAATA |
20 |
TTCTCCACGTAACTCCAGCA |
20 |
196 |
|
144 |
|
|
|
Z20951 |
5 |
TCCCACACAGAATGTCTCCA |
20 |
TCAACGCCATCAGAGATGTC |
20 |
134 |
136 |
138 |
|
|
|
Z21057 |
5 |
GCAGCACGACTGTCACTGTT |
20 |
CTGACTGAACCACATTTCTGAA |
22 |
199 |
|
217 |
|
|
|
Z21290 |
5 |
ATGCATGCACAATGTGTGAA |
20 |
TGATGCCTTCAAGATTGCTG |
20 |
166 |
|
148 |
|
|
|
Z21461 |
5 |
TGGGGAGTAGTTGGGAAGAA |
20 |
GCTCAATTTTGGGACTTCCA |
20 |
206 |
220 |
192 |
|
|
|
Z22152 |
5 |
TCGGAGTGGGTGGACTTTAC |
20 |
ATGATAACACGGCCATCCAT |
20 |
NA |
NA |
NA |
NA |
|
|
Z22208 |
5 |
CGCTACAGCATCCACAGAGA |
20 |
ACCTGTGCTTCTGGAGAGGA |
20 |
277 |
|
315 |
|
|
|
Z22250 |
5 |
CTCATCCCCTTTTCTCCACA |
20 |
GCGTTAAGTGAGGATGGCAT |
20 |
208 |
210 |
208 |
216 |
|
|
Z22309 |
5 |
AAACATTTCCTGCCCCTCTT |
20 |
TGGCATTTTCAGGTTGATCA |
20 |
214 |
|
198 |
218 |
|
|
Z22523 |
5 |
CTCCACTGCCATCTGACTGA |
20 |
TGCATCTTACGCTTTGTTGC |
20 |
190 |
200 |
186 |
|
|
|
Z23075 |
5 |
GCTTTCCTGGCAGTCAAAAC |
20 |
GCATGCAGGAACAAGTGCTA |
20 |
NA |
NA |
NA |
NA |
|
|
Z23076 |
5 |
TGGACTGGGGCTTATAGTCG |
20 |
CCACCTTTTGTCAAGGGTTG |
20 |
NA |
NA |
NA |
NA |
|
|
GOF22 |
5 |
ACCATCGAGGAGCAGAGCT |
19 |
GCAATCCCAATATACGTGCC |
20 |
126* |
NA |
NA |
NA |
"Goff, et al., |
|
Legend
