Linkage Group 7

Linkage Group 07 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker
Number

Linkage
Group

Forward Primer Sequence

Length

Reverse Primer Sequence

Length

AB_1
Size

AB_2
Size

In_1
Size

In_2
Size

Comments

dbSTS
Accession

Z10281

7

CGTGATCACAGCAGACCG

18

GAGTTTGAGCATCAGGAGCC

20

105

 

103

133

 

G39775

Z10367

7

TGCCCTTATCTCAAACACCC

20

TGTTCTTTTGTAGCTCAAAAGCTG

24

164

 

158

170

 

G39787

Z10441

7

GCATTCAGATTCTGGGGTGT

20

CGGATGAACCCATCAATCTC

20

244

 

426

 

 

G39794

Z10451

7

GAGCTTGATTCACACGTCGA

20

CTTTCCCCTGTCAATCCAGA

20

214

 

210

216

 

G41697

Z10457A

7

ATATTTCTCCGGTGGTGACG

20

GCCAAACACACACAGATTCG

20

NA

NA

NA

NA

 

 

Z10487

7

AATATGCACTGCATGTTGCG

20

GGTTGCCAAGCCAAGTTTAA

20

169

205

113

159

 

G39801

Z1059

7

AACAGGTGACAGAGCACACG

20

GGGAGAGGGCAGGACAATAT

20

150

 

125

 

 

G41322

Z10780

7

CAGCAGAACACACGCCTTAA

20

CTGTGTGTCTGCTTTTCCCA

20

248

 

222

254

 

G39828

Z10785

7

AGGTGGGCAAACACTCAAAC

20

TGTGAGCATTGGGTCACCTA

20

183

 

201

 

 

G39829

Z11052

7

CGTAACTCACTGTGAGCGGA

20

AAGCAAGGCACCTCTGAATC

20

147

 

145

 

 

G39862

Z11085

7

GGTTTGTAACTCCTTGAAGGACA

23

CTCATCTCCACCTCCAGAGC

20

212

 

218

 

 

G39868

Z11119

7

GAAAGGGCTCGATATTGCTC

20

AAAGGACCTTCGCTTTGTGA

20

139

 

135

 

 

G39871

Z11122

7

GCTCTTCTTGTCATTTCTGACA

22

CGGCTGAAAAGAACTGCATT

20

299

 

279

281

 

G39872

Z11359

7

TCTGTCTGCACTCGGATGTC

20

CCGAGTTCACACTCCACTGA

20

134

 

110

122

 

G39897

Z11545

7

CTGTTCCTGCAGCTGCCT

18

TCGTTTCCAGCTGTTCACTG

20

139

 

145

151

 

G39929

Z11625

7

CTGTTGATGTTCGCCATCAG

20

GTGCAAACAGGAGAACAGCA

20

299

 

305

321

 

G39938

Z11660

7

CGTCTCATTTCTTTGACGCA

20

TCTTCCTCAGGCCGTTTTAA

20

187

 

177

 

 

G39942

Z11813

7

TTGGAGTGAGAGCGAATGTG

20

TGCACAGCATTGACTGATCA

20

241

 

211

219

 

G39961

Z1182

7

GAGCAGACACTTTACATTTTGTGG

24

GACACTTACAAAGAGTCTTTCATTTCC

27

NA

NA

NA

NA

 

G41335

Z11894

7

GAGAGTGTCAGCAAGTCCCC

20

AGCAACCGTTCTTGTCGTCT

20

165

 

161

163

 

G39970

Z11982

7

CTCCATTAAAGCCGATCCAA

20

CCTCGACCTGCTGACGTATC

20

240

 

250

292

 

G39978

Z1206

7

CGTCTGACAGCCTGCATG

18

CTCGGCGCAGTAGGGAAC

18

NA

NA

NA

NA

 

G39981

Z1217

7

CGCTTGTCACCAAGGTACAA

20

AACGGAAGTGAATTGCCAAC

20

200

 

180

 

Use at your
own risk

G39983

Z1224

7

TCACAGTGGTGTAATGCTGC

20

ACATAGTGGACAAACCTGAACA

22

NA

NA

NA

NA

 

G39984

Z1239

7

AGGAAAGGCCCTGCCTTATG

20

TGGGCTGTACTCATTTATGTTG

22

197

 

237

269

 

G39987

Z1313

7

TGGGTTTACAGCAGTTTGACGG

22

GGTCCACCGCAACATCCTGT

20

NA

NA

NA

NA

Use at your
own risk

G41354

Z13253

7

TGTTGATGTTGACCTGGGAA

20

TGCATTTCCTGGATGAGTGA

20

144

 

146

 

 

G41093

Z13286

7

CCCCTCGCCACATATATTGA

20

AAAATGGCGCCAAACTGTC

19

165

 

157

161

 

G40001

Z13729

7

ACATCCATTCCAGCAACACA

20

CGATCCTGGGCTTTATCTGA

20

?

 

?

?

 

G40068

Z13789

7

TCAGCTCTGTTTGTGAACGC

20

CTCCAAATTTGCACAAACCC

20

190

 

150

 

 

G40073

Z13834

7

TCCACAACTGAGCAGACCTG

20

GGGTTTGATGTCCATCGGTA

20

?

 

?

?

 

G41720

Z13880

7

TCCTTGCTTGGAAGAAGAGC

20

AGGGAAAGACACTGAGCGAA

20

?

 

?

 

 

G40083

Z13892

7

GCTTTTATGGGCTTCTGCAG

20

AACCAGAAACGCAGGAGAGA

20

?

 

?

 

 

G40086

Z13934

7

GCTGTCCAGTTTTTCCCAGA

20

CGCAGGGCATCCTTTATTTA

20

?

 

?

?

 

G40089

Z13936

7

TTGGTGACCAGGGTTTAAGC

20

CCACCCTCTTAATTTGGCTG

20

?

 

?

?

 

G40091

Z1535

7

ACATTTCTCTTACTCTAGTTTTCCCTG

27

TTGGTCCAAACCAGACAACA

20

129

 

115

125

 

G40120

Z15412

7

CAAGCACGGAGATACAAGCA

20

ACTGCATTCACATCAACACTCC

22

207

 

209

 

 

G41839

Z1713

7

TCATTCACTGAGCCTTCAAGGG

22

ACTCCAGACCCTCCATGGTACC

22

NA

NA

NA

NA

 

 

Z17295

7

GCTGAAAAGCGAATTTAAGGG

21

GGAAGTGAATTCCAAAGTGACA

22

115

 

199

209

 

G41101

Z177

7

GGAAACTCTCACGCTCGTTC

20

ACGGATGTTCCTGTAAACGC

20

NA

NA

NA

NA

 

 

Z1798

7

ATGGCATGCATTTTACTAACGG

23

CGAATCGTGGCCCTGACCGT

20

NA

NA

NA

NA

 

G40142

Z191

7

AATATAGCGAAGGGACGATCC

21

GAGGACTTCAGCAGAAACCG

20

NA

NA

NA

NA

 

 

Z20421

7

GAGCACACATCTGCTGGAAA

20

CCTGTGTGGGAGGAAACACT

20

262

 

256

282

 

G40174

Z20495

7

ATGGAACAGCCACAAAATCC

20

CAAGTGCTGCGAAGTCTCAG

20

249

 

239

 

 

G41731

Z20576

7

CATCCAGTGAGTCTCAGGCA

20

GGGCAATAGGGCTGAACATA

20

106

120

94

 

 

G40184

Z20715

7

CATCTGTAAGTGCCCAGCAA

20

GTGTCCGGTGAGGCTACAAT

20

130

172

122

124

 

G40197

Z20853

7

CTGCAATGATTCGTTTGTGG

20

TCTAAGATCCTCAACCACTTGG

22

176

 

184

 

 

G41735

Z20963

7

CCAAAAGACTGGATGGCTGT

20

CTGAGACGCCCCTACAGTTC

20

221

251

245

249

 

G40212

Z21393

7

CAAGCACGGAGATACAAGCA

20

GCCTCGCGGTAATCTACAGA

20

168

 

172

 

 

G41742

Z21519

7

GCCTTTCCCTCCAAATCTGT

20

GGTTGCCTTTTCCTATAAACCTG

23

191

 

221

241

 

G40261

Z21628

7

GGGGGCAAGACAGTGTTTAA

20

GATGGAGAGAAAGTGAGCCG

20

NA

NA

NA

NA

 

G39380

Z21689

7

TATCAGACATCATCTGCCGG

20

CATCATGGAACAATTTTCAACC

22

117

 

113

115

 

G40268

Z21714

7

TATTCTCCGCGTTGTGTGAA

20

TCCCCGCTGTGGAGTAAATA

20

292

 

286

304

 

G40270

Z22040

7

TGAAACAAATCCAGCACCAA

20

AGCGCCCTTCTTACCTAAGG

20

104

126

96

100

 

G40285

Z22244

7

AGAGGAAACCTGCTGGAACA

20

CCAGCCAGATCAGAGACGAT

20

180

 

178

198

 

G40302

Z22628

7

ATCTGAACAGCCAGAGCCAC

20

TGGAAGACTTTCCACACTCATT

22

NA

NA

NA

NA

 

G39498

Z3008

7

TGAGACATTGCCTGATTAACTTA

23

AGACACCGGGGCACAGAAGA

20

257

 

189

215

 

 

Z3028

7

TAAAATAAACCCTGCAGCCGTA

22

ACTGAGCCACCGTGCCACCC

20

246

 

n

 

Use at your
own risk

 

Z3057

7

AGTCTGTTTGGCCTCAGCGC

20

TCTTGGCGACTGAGTTCTGGG

21

NA

NA

NA

NA

 

 

Z3273

7

GCAGACACAACTGACGCATT

20

CACCCAGATGTGATTTGCTG

20

NA

NA

NA

NA

 

G41440

Z3445

7

TTGGGAGACCTACAACCCAGAC

22

GCGTCTCTGGTGGAGGCATA

20

122

 

126

172

 

G41445

Z3668

7

TCACGTAATTTCGGGTGTTTCA

22

TCATGTAGGACTTTTGCCGCG

21

154

 

124

 

 

G41459

Z4375

7

CAATTTGCTTCTGATTCA

18

ATAGAGATAGGTCAACAATCG

21

NA

NA

NA

NA

 

G40360

Z4507

7

TCACCCCATATCACTCCACAGC

22

TTCGGGATCTGCAGCGTGTA

20

231

 

223

 

 

G40365

Z4706

7

AGCTGGAAAGCCAGATGCTCA

21

CCCCATCAACAAAGCTCTTGC

21

188

 

200

 

 

G41533

Z4999

7

TCGCTGGTATGACAAACACGTG

22

GGCAGACAGGCAGAAAGGGA

20

NA

NA

NA

NA

 

G41548

Z5450

7

TGCAGAAGCCTGAAACAGAATG

22

AACACATCAGTAGGCGTGCACC

22

NA

NA

NA

NA

 

G40389

Z5467

7

AAAGCCCCTGATGAATAATGGG

22

ATCGCTGTTCTCTGGCGACC

20

NA

NA

NA

NA

 

G41581

Z5563

7

TGCAGGTTGTTCGGTCCTGA

20

TCACAATGCACACAACCCCC

20

258

 

260

 

 

G41588

Z5649

7

TCAGAGTTGCGGTCAAAACATC

22

AATGCATCATCACCAGGCTG

20

NA

NA

NA

NA

 

G41594

Z6273

7

GCTGTTGCTTGGTGACTGAA

20

CAACTGGAGACAGACTTTGTCG

22

271

 

223

243

 

G40413

Z6483

7

AGGAAAATGAATGCCCGAG

19

AGCAACGAGTGGCATTCTCT

20

244

 

246

248

 

G39580

Z6523B

7

AGGACGTCACCAATGTTCTC

20

CTTGATAAAGGTGACCCGTACC

22

 

 

 

 

 

 

Z6819

7

ATTGTCCTGTGGATTCTGTGC

21

CACCTGCTCAATACTTCTGTGC

22

139

 

95

105

 

G40472

Z6852

7

CATGTGGTACAGTTGAAGGGG

21

ATCATTGGAAACCATCCATACA

22

?

 

?

?

 

G41129

Z6861

7

CTGCAGTGCAGCACAGGTAG

20

CCTGCATGCAGTCTGACG

18

?

 

?

?

 

G40477

Z7069

7

CCACACAGACTGACCCCTTT

20

TGGAAAGGAAACTGTCAGGG

20

147

 

129

133

 

G40497

Z7109

7

CGCCAAATCAAGATACTGCA

20

CGGAAATCGTAATATTGTAAAATGC

25

165

 

203

 

 

G40502

Z7244

7

GTCTCCAATGGCTGAGCAGA

20

GAAGAGCCACCGATGAGTTC

20

122

 

118

120

 

G41627

Z7255

7

ATGCCCACAAACCTTCCAT

19

ACACACGCGCAGAGATATACA

21

156

 

112

 

 

G40529

Z7422

7

CTGGAGGAGAAAGTCAACCTC

21

CATCTGCTGTGGAGGCCT

18

192

 

180

194

 

 

Z7479

7

CTGCTGGAGATGAGGGATGT

20

TAGAGCGGATCAACCAAACC

20

137

 

149

159

 

G40559

Z7549

7

CACTGCATTACTGAAGCCGA

20

ATTGAAGGTGCATGTCGTCA

20

145

 

103

115

 

G40568

Z7555

7

GGAAAACAGCAGTCTGGAGG

20

GACGGTGAAGGTTCTGGAAA

20

117

 

99

101

 

G40570

Z7562

7

GCAGTTCACATAAACACTGATGC

23

CAGAGACTCTGCCCCTGAAG

20

175

 

183

235

 

G41151

Z7836

7

GGGTCTGTCCCTAGTGCTGA

20

TTTGTTCTGACCACCTGCTG

20

NA

NA

NA

NA

 

G40599

Z7875

7

TGCCGCAAGATGTTTATCTG

20

CTGATCGGCTTGTGTTGAGA

20

164

 

144

154

 

G40605

Z7958

7

TGTCCCTCTGGAGAGATGCT

20

TCATTCCCAACTCAGAACCC

20

210

 

202

204

 

G40614

Z8145

7

GCATCTTCAGACAGGACGGT

20

CTGAGGAATATACAGCGCCC

20

253

 

225

291

 

G40625

Z8156

7

GGCAATGGACTCTTTCAAGC

20

GTTTCATGGCTTACATGCCC

20

208

 

260

268

 

G40627

Z8213

7

ATGATGGAGGACAGAGCCC

19

ATCTCTCATCACGGCCAATC

20

125

 

119

127

 

G40632

Z8216

7

CTTAAACCCCACAGTCAGGC

20

GATGCTTTGGATTCAAGGTTG

21

119

 

117

123

 

G40633

Z8218

7

CCAGAAGTGTGTTTCTACACGC

22

ATGATGTGACTCCCAGAATGC

21

214

 

202

238

 

G41682

Z8252

7

AGGTGTCATGAGTGCTCTATGC

22

TGCAATTTACACGTTTTTGTCA

22

110

 

106

130

 

G40638

Z8495

7

TCATAATCATGTGCTCCTCTTGA

23

TTGTTGTTGACGCTGCTTTC

20

246

 

224

234

 

G41678

Z8536

7

CCAACACTGGATCACACCTG

20

GAAGAGGCCAACACATCTCC

20

NA

NA

NA

NA

 

G40665

Z8540

7

AAGTCACATCTGGGTACGGC

20

TGCATCACTGAAAATGTGCA

20

181

195

177

189

 

 

Z8574

7

GGTTTGAATGGTGGGTGAGA

20

CTCTGAGACCTGCTCCAACC

20

213

 

225

 

 

G40667

Z8604

7

GTGCGTAAATGGATCCCATC

20

TGAAGCAGGACAAAGAGTGC

20

158

188

154

198

 

G40670

Z8693

7

GCTTTTTGAGCAGATGAGGC

20

CATGTACGCGTTGACTTTGC

20

176

 

220

 

 

G40676

Z8889

7

ACACACATGGGACAGGGATT

20

CAGGTTAAACCCCTTTGTGG

20

250

 

232

 

 

G40704

Z8975

7

TGTTCAGACCCTGAATGCAC

20

TTCAGTCATTCAGAAGGGGG

20

196

 

136

172

 

G40711

Z9067

7

TGCACACTGGTGCTGGAT

18

TTGTGTCCAGTGTCTGCACA

20

149

 

175

241

 

G41630

Z9068

7

TGCGCTTCATCCTCTACTAAA

22

GTGAGCTGCTGCCCTGTG

18

250

 

222

236

 

G40724

Z9133

7

TTTGATTGTCCCTGCTTTACG

21

AAGCCCCATCTCCAAGAACT

20

233

 

219

 

 

G40736

Z9249

7

AGTGAACGTCGTGCCACTC

19

TAAGAGGGTTGGGTTTCGG

19

195

 

211

281

 

G41636

Z9273

7

CAGGAGTTGCAGAGTTTGTCC

21

CTTTGATTCAGGTACCATTTGC

22

261

 

247

 

 

G40761

Z9323

7

TGTGTGAGACACAGGTGAAGC

21

AACTGCTCAGATGTGACAGGA

21

190

 

168

190

 

G41178

Z9521

7

AGATCTCCCACTGACTGCTACA

22

GCTTGAATGGGAATTGGAGA

20

90

 

86

102

 

G40805

Z9804

7

TGTCCGTGTCAGTTCTGCTC

20

GGAGGAAGTGTTCGGATGAA

20

136

140

136

138

 

G40842

Z9869

7

CAACTGGGCAGTTAGGGCTA

20

CAGGGCTGAGGTCACACATA

20

159

 

97

113

 

G40852

Legend

Table generated Wed Oct 7 16:28:07 1998