Linkage Group 21
Linkage Group 21 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
msxD |
21 |
AGCTCCGTCTTCACTGACTGACA |
23 |
TGTGGTGGACATTAACTCATCCA |
23 |
NA |
NA |
NA |
NA |
|
|
Z382A |
21 |
GTGTCCGTTTTTTCGGTGTT |
20 |
TAGCACGCTAACGGCTAACA |
20 |
94 |
|
104 |
128 |
|
|
Z382B |
21 |
GTGTCCGTTTTTTCGGTGTT |
20 |
TAGCACGCTAACGGCTAACA |
20 |
NA |
NA |
NA |
NA |
|
|
Z16 |
21 |
ATACTCAAACACATCCCAGCC |
21 |
GAGGTGCACGTCAGCGAC |
18 |
NA |
NA |
NA |
NA |
|
|
Z18 |
21 |
CTCTTTTGCCTCCTCTCGG |
19 |
CAGCCTTAACACTGTGTCTGTG |
22 |
NA |
NA |
NA |
NA |
|
|
Z540 |
21 |
GTGGCCGTCAGTTCAGCT |
18 |
CCTCCTGTCAGGTGAAGCTC |
20 |
NA |
NA |
NA |
NA |
|
|
Z722 |
21 |
AACTGAATGACTATGGGCGC |
20 |
TCTTCTTGGTAACCAGACAAAGC |
23 |
125 |
|
107 |
|
|
|
Z953 |
21 |
AGAAAAGAGTGAGGACTGTGTGC |
23 |
TGCGAGTTGACAGCCTGTAC |
20 |
98 |
|
100 |
|
|
|
Z1162 |
21 |
TTTATTAATATTCTGTGCTGGGC |
23 |
GCCGGAAAGACACCTTCATA |
20 |
134 |
|
134 |
140 |
|
|
Z1251 |
21 |
ACGCTGAAGGCCCAGACAGT |
20 |
TGTTCTAGCATGATTTACTAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1274 |
21 |
AGCTGCACATCACTGAGGG |
19 |
GCAGGACGAGCTCTGAAAAC |
20 |
NA |
NA |
NA |
NA |
|
|
Z1295 |
21 |
CGCTCGGGATTGAAGGTCATT |
21 |
CTGGAGATATTCACTGAACAAC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1456 |
21 |
AGATGGCTGGCGGACAGAAC |
20 |
GAACGACAGCTCTGAGGATACC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1497 |
21 |
AGCGGCTCGCATCACTATAC |
20 |
TGTAGAGCCACTCGACACATG |
21 |
NA |
NA |
NA |
NA |
|
|
Z1806 |
21 |
TCACTGAGCCGTAAACCCTCG |
21 |
CTGTACCGTCGCTCTGCGCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z3332 |
21 |
CAGCACTGCACGTGAACCAC |
20 |
CTGGGAGACTCCATCAGTGCA |
21 |
136 |
|
144 |
|
|
|
Z3476 |
21 |
GGAGAGCTGCACCGTGAACA |
20 |
GCCGGAAACCGCAAGTGTAG |
20 |
NA |
NA |
NA |
NA |
|
|
Z3561 |
21 |
ACTTTGAGGGATACAGACCGCG |
22 |
AGGGAGTCACTGTCCCTGCG |
20 |
138 |
144 |
128 |
|
|
|
Z4020 |
21 |
AAAACACGCACCCACAGCAG |
20 |
CCGTGCGGTTCTGCTTATGA |
20 |
NA |
NA |
NA |
NA |
|
|
Z4074 |
21 |
CAGAGTTTATGGGGATCAGCGG |
22 |
GGCCGACACAGTTACAGGCC |
20 |
254 |
|
176 |
202 |
|
|
Z4082 |
21 |
AACCACCGACTTCCATAGCAGG |
22 |
AAAGGCTTGCAGCGCCATCT |
20 |
NA |
NA |
NA |
NA |
|
|
Z4192 |
21 |
CATCCTCAGCACCCTCAGACTG |
22 |
ACTGGATGGAGACCAAGCGC |
20 |
NA |
NA |
NA |
NA |
|
|
Z4425 |
21 |
ACACGACAGGAGGGGGAGGA |
20 |
CCCAAATGGCTGTGCTACAGG |
21 |
126 |
154 |
176 |
|
|
|
Z4492 |
21 |
ACCTGAGTGGTGGCAGAAGACC |
22 |
TGGTGCAATGTTGACTGAATGA |
22 |
152 |
|
124 |
|
|
|
Z4718 |
21 |
CATTAATCCAGCAGCGGATGC |
21 |
ATCCATGCGCAAACGTCTGA |
20 |
246 |
|
254 |
|
|
|
Z4773 |
21 |
CATTAAACATGATGACGGCG |
20 |
ACCAAACGGAGTGGATGAAG |
20 |
NA |
NA |
NA |
NA |
|
|
Z4827 |
21 |
CCCGCTAACAATGGAGAAAA |
20 |
ACACGCACAGGTGTCATGTT |
20 |
NA |
NA |
NA |
NA |
|
|
Z4910 |
21 |
TTGAGGGCATCCGCTGTGTA |
20 |
TGAGTGCTTCAGCACCCTGG |
20 |
398 |
|
414 |
|
Use at your |
|
Z5503 |
21 |
GTGAGTCGGATTCAGTAGGCCA |
22 |
GCAAACTCCACACAGAAATGCC |
22 |
235 |
315 |
247 |
|
Use at your |
|
Z6083 |
21 |
CGACCCCTGACGAATAAAGA |
20 |
CGCTGACCTTCACAAACAGA |
20 |
196 |
|
230 |
|
|
|
Z6087 |
21 |
GAACAAAGATGTGCCCGG |
18 |
CAGCAGGAACACACGCAG |
18 |
102 |
|
96 |
|
|
|
Z6089 |
21 |
TGCAATCCTTTATTGGGAAA |
20 |
GTGTACCTAATAAAGTGGCCGG |
22 |
123 |
|
143 |
|
|
|
Z6174 |
21 |
TGAGATTGTCCTGCAGTCAC |
20 |
GCGGACTGCATGTGAGAGT |
19 |
165 |
|
177 |
|
|
|
Z6218 |
21 |
CCACTGCAGATCCTCCTTTC |
20 |
GTAACCTCTCTGGCCATCCA |
20 |
129 |
|
133 |
135 |
|
|
Z6243 |
21 |
ACAACGACACGAGCGAATC |
19 |
TCACACCAAACTGTGGAATCA |
21 |
115 |
|
136 |
|
|
|
Z6271 |
21 |
GTCAGATTTCACTCCGACAGA |
21 |
ATCACCTTCACTTGTTCAGTCG |
22 |
272 |
|
260 |
|
|
|
Z6281 |
21 |
TGGCATGTTGTCGTGTCC |
18 |
TAGCACGCTAACGGCTAACA |
20 |
116 |
|
122 |
142 |
|
|
Z6295 |
21 |
TCACAGCAGGTTAGTCACGTG |
21 |
GTGAGATCTCTATCGTCATGCA |
22 |
172 |
|
160 |
|
|
|
Z6537 |
21 |
AGAGTCAGACGAGACTGCAGG |
21 |
AGTGCTGTCGCCTCACAGAG |
20 |
96 |
|
126 |
142 |
|
|
Z6571 |
21 |
TGCAAACACACTAACAGCACT |
21 |
GAGTACAACCAGGTCAAAACCC |
22 |
159 |
|
143 |
? |
|
|
Z6869 |
21 |
TTCAGTGCACCTCACCAGAC |
20 |
TGTATTTGACCCTCTCACATCG |
22 |
? |
? |
? |
|
|
|
Z7117 |
21 |
CCACAAACACAGCCAGAAAA |
20 |
GTCGTGCCGACCATAAAAAC |
20 |
222 |
|
208 |
240 |
|
|
Z7224 |
21 |
GCTGTGTTGATGTGGGAATG |
20 |
TCTCGGCTTGGAACTTCATT |
20 |
278 |
|
280 |
|
|
|
Z7405 |
21 |
TCATAAGAGCAGTGCACTGACA |
22 |
GGGAGCGCATCACAGACT |
18 |
259 |
|
231 |
|
|
|
Z7423 |
21 |
TCTCCAAGGTTACATGTCGC |
20 |
TGCTTGTCTCCAGGGCTC |
18 |
294 |
|
286 |
|
|
|
Z7609 |
21 |
GAACAGCGATGTGCTCAGTT |
20 |
TGTGGATGTGCCTCCTGTTA |
20 |
216 |
314 |
214 |
|
|
|
Z7809 |
21 |
GCCCTCCATTTGCAGTTCTA |
20 |
ACAGATGGTGAGAGCGTGTG |
20 |
250 |
|
208 |
|
|
|
Z7925 |
21 |
CAGTCCGTCCCTTCTTTCTG |
20 |
TTCATCTGTCTTGTGGCAGC |
20 |
204 |
|
236 |
|
|
|
Z8073 |
21 |
TTCTAAAGGGTTGGTGTCGC |
20 |
CTCTCTGAGGCTGGAGAAGG |
20 |
269 |
|
221 |
229 |
|
|
Z8230 |
21 |
ATCACTGACGGGGTCCCT |
18 |
TCTCTCCTCTCCCCTAAATTCA |
22 |
250 |
|
254 |
|
|
|
Z8316 |
21 |
AGACCATAGCAGAGAGCCCA |
20 |
TTCTTTGGAACCCACAGTCA |
20 |
122 |
142 |
174 |
|
|
|
Z8803 |
21 |
CCGATGACACGTCCTTACCT |
20 |
ACACTGTTATTGCCTCTGGG |
20 |
207 |
|
193 |
|
|
|
Z8895 |
21 |
ATGAGGTTACGGCTGAATGC |
20 |
AACAGCCAGACGGTAACCTG |
20 |
159 |
|
111 |
123 |
|
|
Z9055 |
21 |
ACCACTGGCGCTCATCTC |
18 |
CGCCTTCATCATCATCACC |
19 |
132 |
|
118 |
162 |
|
|
Z9233 |
21 |
ATCAGGAAACAATTCACCGC |
20 |
AGAAAAGGGGGCGAAGGT |
18 |
185 |
211 |
117 |
|
|
|
Z9236 |
21 |
CAGAGCAGGTGCAGAACACT |
20 |
ACAAAACTGAACACCAGCACC |
21 |
256 |
|
238 |
254 |
|
|
Z9339 |
21 |
TCTGCTTTGATGTCGACCTG |
20 |
CCAAAGTAAAGGTGTGACAATG |
22 |
287 |
|
273 |
299 |
|
|
Z9728 |
21 |
GTGAAGCGCTCTGAGATTCC |
20 |
CCGGAGAGTTTGACTGAAGC |
20 |
198 |
|
190 |
202 |
|
|
Z9792 |
21 |
TGGTGCCATGTTGATCTGAT |
20 |
ACGCGTTATTGAACGTCTCC |
20 |
270 |
|
258 |
260 |
|
|
Z9956 |
21 |
GCTTGGGTTTGGATTCTTCC |
20 |
AGACTTCATTGTCTGCTTTGTG |
22 |
158 |
|
146 |
? |
|
|
Z10305 |
21 |
CGCAAAATATTTATGGCACAGA |
22 |
TTGAATGTAAAAATGCAAACCG |
22 |
178 |
200 |
156 |
|
|
|
Z10432 |
21 |
CAAAATAAGGGGCCTTGACA |
20 |
GATGACTGCTCTCCCTCGAC |
20 |
244 |
258 |
228 |
|
|
|
Z10508 |
21 |
AGCAGATCACAGGCCTTTCC |
20 |
AGATCTCCTGCTGCCAGTGT |
20 |
107 |
|
97 |
109 |
|
|
Z10567 |
21 |
TCGGCCATACCGTATGTTTT |
20 |
TACCGTTAGCCCACCTGAAC |
20 |
224 |
226 |
250 |
|
|
|
Z10960 |
21 |
TCCCCGCTGAGTCCTCTATA |
20 |
AGTGTGCGAGGTGTGTCAAG |
20 |
166 |
|
170 |
|
|
|
Z11113 |
21 |
ATGGCTTCGAAAACGGTAAA |
20 |
GATGCTGCAGACGGACAGA |
19 |
209 |
|
205 |
219 |
|
|
Z11343 |
21 |
GATCTTTCAGCTTTGGCTGC |
20 |
CAAACACTGAGCTTCCCTCC |
20 |
145 |
|
149 |
|
|
|
Z11532 |
21 |
ACGATGCTCCTGGATAATGC |
20 |
TCCTATTCTGAGCATGTGCG |
20 |
207 |
|
226 |
|
|
|
Z11574 |
21 |
GGCTACACATGCAGTGATGC |
20 |
AGTGATCAGGAGATGACCCG |
20 |
168 |
|
118 |
138 |
|
|
Z13419 |
21 |
AGGTTTCAGAGCCCTCATCA |
20 |
CATGTGAACTCTGAAGCCCA |
20 |
220 |
286 |
202 |
|
|
|
Z13467 |
21 |
CACAGCACCTATGCATTGCT |
20 |
CAGACAGCAACCGAGTCTGA |
20 |
180 |
|
300 |
|
|
|
Z13719 |
21 |
TGTGTCCTGAATGGATCTGC |
20 |
TGTCAGTGATTTTCCCACCA |
20 |
156 |
|
142 |
146 |
|
|
Z13764 |
21 |
CCCCAGTGTGCGAGAGATAA |
20 |
AGAGATCATCCTGGTGGACG |
20 |
184 |
|
194 |
336 |
|
|
Z15421 |
21 |
AGGATGACATCACTCTGGGG |
20 |
TCCCCTGGTGGCAGTAATTA |
20 |
259 |
|
249 |
263 |
|
|
Z15491 |
21 |
AGATCGGCCCACTCACATAC |
20 |
AAGGGCTGGTTGATTCACAC |
20 |
135 |
|
133 |
|
|
|
Z20205 |
21 |
ACGGCATCTCAGTGTGACAG |
20 |
CACGCTACAGGAGCAAAACA |
20 |
172 |
|
150 |
|
|
|
Z20446 |
21 |
AGTGCCTGAGCACCACTCTT |
20 |
TTTGTGAAAATGCTCACACTGA |
22 |
206 |
210 |
192 |
|
|
|
Z20701 |
21 |
GATCAGACGCTCTGCTGATG |
20 |
CAGAGCCACAGGGAAATGAT |
20 |
106 |
|
122 |
|
|
|
Z20812 |
21 |
TGATCAGGTCCTGCTACCTG |
20 |
TGGGACACAAATGGGATTTT |
20 |
296 |
|
338 |
250 |
|
|
Z21106 |
21 |
GACACATTGCTCGGGCTATT |
20 |
CCCCACAACAAAGAATACAATG |
22 |
283 |
295 |
361 |
|
|
|
Z21718 |
21 |
CGTATTTTTCCACGCGTTTT |
20 |
CCCAGAACGAGTTCACAGAA |
20 |
204 |
|
214 |
|
|
|
Z22174 |
21 |
TCGTGACTTAGCTGCTCTTCA |
21 |
GGAGGGGTCAGATCAGATGA |
20 |
238 |
|
254 |
310 |
|
|
Z22852 |
21 |
CGGTACTGGGCTGCTCTTAC |
20 |
CCGTTCCTTCTGGCAAATAA |
20 |
NA |
NA |
NA |
NA |
|
|
GOF16 |
21 |
AGTAGAAAAGGCTTGCAGCG |
20 |
GAAACAAGTGGAGGAAATGAGG |
22 |
136* |
NA |
NA |
NA |
"Goff, et al., |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
