Linkage Group 20
Linkage Group 20 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z374 |
20 |
TTTTAATCCAGCAGCAGATCTG |
22 |
CCCAGGTTCACAAACCCTC |
19 |
166 |
194 |
206 |
|
|
|
Z536 |
20 |
ATCCAGAGTGTGTCCCAGTTG |
21 |
AGGTGTGTCCCACTGACTCC |
20 |
118 |
|
124 |
|
|
|
Z3211 |
20 |
AATGTGCAAGAAATCCACAGC |
21 |
GAGGTGAGAGCCAAGAGCC |
19 |
NA |
NA |
NA |
NA |
|
|
Z3824 |
20 |
CCGCTTAGATGTGCATTATCCC |
22 |
TGGCATTCCCGTTTAAAACCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z3954 |
20 |
AATGGTGTAGAAACCCTGCG |
20 |
AAACGCACTAAACATCTCTCTTG |
23 |
277 |
|
163 |
181 |
|
|
Z3964 |
20 |
GCCATTTTTCTTGCTGCAATCA |
22 |
TGCATGCCATAACAAACACTGG |
22 |
275 |
|
209 |
351 |
|
|
Z4157 |
20 |
GGATGCGCAAGGAGAATGCT |
20 |
TTCAAGCGCGAGAGAAAAACG |
21 |
NA |
NA |
NA |
NA |
Use at your |
|
Z4304 |
20 |
TTAAACTCCTTTGCTCGAGCCG |
22 |
CAGACATTGCCTGAGGATGCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z4329 |
20 |
CAGGTGGAACATTTCCTTTGCC |
22 |
GCCTCCAGACAGAATGCAGC |
20 |
166 |
204 |
220 |
418 |
|
|
Z4394 |
20 |
CAGCGGTCTGAAATTAATCGGC |
22 |
GGTAACAGGACAGTGCCACCG |
21 |
237 |
|
259 |
|
|
|
Z4627 |
20 |
GGGTGATGTGGCCAAGGTCT |
20 |
AAAGGGGGACCACAGTTTGAA |
21 |
290 |
|
268 |
286 |
|
|
Z6357 |
20 |
AAGTGGCCGGTGAGTACAAC |
20 |
TACTGCAGTTTGCACTTTCACC |
22 |
173 |
203 |
171 |
181 |
|
|
Z6425 |
20 |
ATCATTCTGGACATGGACTGC |
21 |
TCAATATCTTAATCGCCTGCTG |
22 |
280 |
|
262 |
296 |
|
|
Z6804 |
20 |
ATGTGGGAATACCTGGACCA |
20 |
TCTGATGGCTCTCGGTTTCT |
20 |
182 |
|
166 |
|
|
|
Z6973 |
20 |
TGCTGCATGACAGCCATT |
18 |
TCCTGTTCATCATCTGAACACC |
22 |
? |
|
? |
? |
|
|
Z7158 |
20 |
TGACATTCCTAGTCCATGTTCA |
22 |
CCCATTTGTTGCATAATTTGG |
21 |
183 |
|
237 |
271 |
|
|
Z7171 |
20 |
TTCTGGACATATGGAGCCTCTT |
22 |
ATGACCTGTACCGACCCAAA |
20 |
270 |
278 |
234 |
240 |
|
|
Z7568 |
20 |
CGTGCTTGTTGCTGCATAGT |
20 |
ATGTCTTGGTCACACTGTTTGG |
22 |
289 |
299 |
307 |
321 |
|
|
Z7603 |
20 |
CCCAGAGTCGAGACTTGCTC |
20 |
GGAGTCGGGAAAGTGTGTGT |
20 |
168 |
176 |
158 |
184 |
|
|
Z7803 |
20 |
GCCAAACTGAGCCTAGAAACC |
21 |
TGCTTATTTGTAGGCCACTGG |
21 |
231 |
|
211 |
257 |
|
|
Z7933 |
20 |
TTCTCTAAACCGCTGCAGGT |
20 |
TCTCCTGAGAACCGAATCGT |
20 |
259 |
265 |
225 |
269 |
|
|
Z8150 |
20 |
TTTAGCTTCCTGTCACGCCT |
20 |
GATTGCCATAATTGTTCCGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z8164 |
20 |
GAGCAAATGCATACACTGGG |
20 |
AAAGATGAACCACCTGCTGC |
20 |
108 |
|
102 |
|
|
|
Z8219 |
20 |
ACACGCACTGAACACAGAGTG |
21 |
CCCACTCACCTCCACACAC |
19 |
129 |
147 |
111 |
137 |
|
|
Z8554 |
20 |
CGGTAAATCAGTCCCAGCAT |
20 |
ACCTCTGCAGGACTGAGGAA |
20 |
112 |
|
92 |
226 |
|
|
Z8706 |
20 |
GCAGCAAATCACAATCAATCTG |
22 |
TAATCGCTGCTGTCTGTTGG |
20 |
263 |
289 |
211 |
247 |
|
|
Z8809 |
20 |
CTTGATTGGATGGCCTGAGT |
20 |
TCTCAGTCATGGTTGCTTCG |
20 |
292 |
|
318 |
340 |
|
|
Z8976 |
20 |
GTGAGCAGCCAAACAGATCA |
20 |
CTCTTCACATGCCCCTCACT |
20 |
221 |
|
231 |
249 |
|
|
Z9209 |
20 |
CAATACCTTCCGGATGCACT |
20 |
CAGACCGGGATAAAAGGTGA |
20 |
126 |
142 |
122 |
|
|
|
Z9334 |
20 |
CACATGGTGCTGTCGCTC |
18 |
AGTCTAGAGCGCCATCTACTGG |
22 |
129 |
141 |
143 |
161 |
|
|
Z9343 |
20 |
CTGCGGCTGATAAGAACACA |
20 |
TGATTTCCTCAGTTGCAGCA |
20 |
176 |
|
168 |
174 |
|
|
Z9708 |
20 |
GAGCGGCAAGTATGTGGATT |
20 |
AGGAGGCGAATCAGACTGAA |
20 |
210 |
|
164 |
172 |
|
|
Z9729 |
20 |
CGCTTTCTGTCTGGTGAACA |
20 |
GTTCTCAGGGGCTGGTTACA |
20 |
246 |
248 |
240 |
242 |
|
|
Z9794 |
20 |
TCACCTTCTGAGGAGCAGGT |
20 |
GTGGCTGCTGGAGCTTATTC |
20 |
199 |
|
153 |
|
|
|
Z9959 |
20 |
GACGCTTAATTGCAGCTCCT |
20 |
AATTGCACAAGCGAAGTTTT |
20 |
? |
? |
? |
? |
|
|
Z9962 |
20 |
GCTGAACACCACCATCACAC |
20 |
TCAGCTGTGAGGGAAGCTTT |
20 |
159 |
|
139 |
161 |
|
|
Z11056 |
20 |
TTGCAATGTGTATGCTGTCAAA |
22 |
CAAGTGTCCACTCACCCAAA |
20 |
184 |
200 |
172 |
260 |
|
|
Z10177 |
20 |
GCAGAGCTGGAGTCTTCATCA |
21 |
TCACCATTCAGCAACAGCTC |
20 |
142 |
|
152 |
158 |
|
|
Z10452 |
20 |
TCATCATGGGAATCTGCTGA |
20 |
TCATTTGGACATCCAAGGGT |
20 |
132 |
|
136 |
|
|
|
Z10756 |
20 |
AAAAGTTCCGTCAGTCACCG |
20 |
ATACGCTGAGTACGCGACCT |
20 |
189 |
|
191 |
199 |
|
|
Z10901 |
20 |
CAGTGCAGATTCTCCATGTCA |
21 |
ATTGAGAGGCGCTGCATTAT |
20 |
224 |
|
|
236 |
|
|
Z11047 |
20 |
TGCAGTGAACTCAGCAGGAC |
20 |
GGCAGCTTCATATCCAGACG |
20 |
240 |
|
212 |
218 |
|
|
Z11841 |
20 |
TTCTGTCACCTGCAGTTTGC |
20 |
GGCACGTAAAAGCGGTTTAA |
20 |
243 |
|
245 |
|
|
|
Z13214 |
20 |
ATGCCCTTACAGTTGCAACC |
20 |
CATGTTTTCCCCATGCTTG |
19 |
236 |
|
210 |
230 |
|
|
Z13453 |
20 |
TGAGCTTCTGTTCTGCCTCA |
20 |
ACGGGAAGTAAGAGCGATCA |
20 |
132 |
|
128 |
130 |
|
|
Z13626 |
20 |
TGCTAACACGTGTAGTTGCAGTT |
23 |
GTTTCCTCACCTTGCTCTGC |
20 |
233 |
|
229 |
231 |
|
|
Z13672 |
20 |
TGCAATGTGTTTTGACTGCT |
20 |
CAGCATATTGGCTGAGCTGT |
20 |
97 |
|
79 |
|
|
|
Z13678 |
20 |
TCACAATTAATTGCATCCAAAA |
22 |
TTGGCAGAGAGTAGGATGGG |
20 |
|
|
|
|
|
|
Z13867 |
20 |
TGAGTGTCAACGGCAAGATC |
20 |
TGGCAACACTAGTGGGTTGT |
20 |
127 |
129 |
123 |
|
|
|
Z17204 |
20 |
GGGGTGAACTGTGCCTTTAA |
20 |
ACCGAGGAGAACTCGAGACA |
20 |
208 |
|
240 |
250 |
|
|
Z20046 |
20 |
TTCAGGTTTAAGGTTATAAAAACGA |
25 |
AACCAATATGTCATGGCATCC |
21 |
241 |
|
145 |
|
|
|
Z20538 |
20 |
TGTGTTAAAAACAAGCATAGGATCA |
25 |
TGCTGTGGACAAGGAATGAA |
20 |
147 |
157 |
135 |
145 |
|
|
Z20582 |
20 |
GCTGTAGCGTTAACAGCGTG |
20 |
CTGACGGAGGTTGTTGGTTT |
20 |
259 |
|
231 |
|
|
|
Z20719 |
20 |
GTGTCGCTTTGGAAGAGAGG |
20 |
GGGAGTGTCTGAACCATGCT |
20 |
279 |
|
194 |
325 |
|
|
Z21067 |
20 |
AGCCTCACTGGAACAAAAGC |
20 |
ATAAAGAAGACGCCGCTTGA |
20 |
252 |
|
192 |
228 |
|
|
Z21123 |
20 |
ATCCAGACGGAGTACTTGCG |
20 |
AAGACGCACGGTAAACATCC |
20 |
284 |
|
274 |
290 |
|
|
Z21170 |
20 |
AAACATTGCTTTTGGCCACT |
20 |
CTCACTCCCCCACACTGTTT |
20 |
211 |
|
201 |
|
|
|
Z21401 |
20 |
CTGTCATAAAAACAGCGGCA |
20 |
GCTGATTCTTTTGTTGGGGA |
20 |
203 |
|
201 |
205 |
|
|
Z21485 |
20 |
GAGGAAAGTAGAGGCGCAAA |
20 |
CCCTCAGATATTCATGCCGA |
20 |
149 |
157 |
143 |
153 |
|
|
Z22041 |
20 |
CAAACACCGAAATACATGCA |
20 |
GCGGAAGACGGTTATTGAAA |
20 |
160 |
|
150 |
|
|
|
Z22144 |
20 |
TGTGGCTCTGCAGAATCAAG |
20 |
TCCATTCCTGTGAAGAAGTGT |
21 |
NA |
NA |
NA |
NA |
|
|
Z22659 |
20 |
GCCCAGTGGACCAGAGTAAC |
20 |
GAACAGGCCTCTTCTGGTTG |
20 |
NA |
NA |
NA |
NA |
|
|
Z22926 |
20 |
TCAGCGTTTTACCTCACACG |
20 |
GCCTTTCTTTCAATCCACTCTT |
22 |
NA |
NA |
NA |
NA |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
