Linkage Group 25
Linkage Group 25 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z1197B |
25 |
AGTGTGTAGTCCTGCTGCGGG |
21 |
ATCCTAGCTGGTAAGGCAGGGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1799A |
25 |
AGCGCTCCTCCGTCTGCTGT |
20 |
TCCGCGTCCATCACTGCGGG |
21 |
NA |
NA |
NA |
NA |
Use at your |
|
Z49 |
25 |
GATTATCCTCATAAGTACGGGCC |
23 |
AGCACATCTTCATCCTGCG |
19 |
NA |
NA |
NA |
NA |
|
|
Z233 |
25 |
CAGTTTTCGGGACCTCTGAG |
20 |
TGGATGAAGTTTACGGAGCC |
20 |
NA |
NA |
NA |
NA |
|
|
Z464 |
25 |
ACCTCCACACGGAAAGGAG |
19 |
GGTGATGAAAAATTAGCCTTCG |
22 |
NA |
NA |
NA |
NA |
|
|
Z787 |
25 |
GCTGCGTGATATTCATGGG |
19 |
CTGTATCCTGCTATACAGCCCC |
22 |
125 |
|
111 |
|
|
|
Z975 |
25 |
ACCTGTGTCATACCCATGTCA |
21 |
CTGGTGTCCCCCACAGTC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1213 |
25 |
CAGAAATGATGAAGCGTAAATAATG |
25 |
ACCACCTCGCCCAGAGTAC |
19 |
127 |
|
117 |
|
|
|
Z1378 |
25 |
TGGAGGAATGAGGACAGCAGG |
21 |
ACCGTGTTGACAATCGATCAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z1431 |
25 |
TTCTCCACATCCTGCTGAGC |
20 |
GTGGTGAACGGCTCCTCTGG |
20 |
137 |
|
149 |
|
|
|
Z1462 |
25 |
TGGGCTGTTGGGTCGTTTTC |
20 |
GACGTTCTGCTCCGACAGCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z1477 |
25 |
CGGCTTCCAGGAACACCTTT |
20 |
TCGTACACATTTACTACAGAAG |
22 |
NA |
NA |
NA |
NA |
|
|
Z1671 |
25 |
CGCTGGCAAACCATGACATC |
20 |
AAGGATCATGTGAAGCTGCCG |
21 |
138 |
154 |
124 |
128 |
|
|
Z1772 |
25 |
GCGCAGGTCATCGCTACACT |
20 |
ATTCATGTTGAACGCCGGAT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1984 |
25 |
CTGCACAAACAGGGTTGCGT |
20 |
CTGCATTGCATCATGGTCTCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z3065 |
25 |
GGTTGCAGCTGGTTGCACTG |
20 |
CCATCAAAACTGCTGTGCATCA |
22 |
NA |
NA |
NA |
NA |
|
|
Z3208 |
25 |
CAGTTCTTACTCACCCGGGCA |
21 |
TCACGGCCGTCTCTCATTCA |
20 |
238 |
|
202 |
274 |
|
|
Z3376 |
25 |
TGGCCTCCGTTACATTTGCA |
20 |
AAATCCAGGCTCAAACAGGTCG |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z3405 |
25 |
TCAAAATGTACACCCACAGCGG |
22 |
CCTGCGAGTTCGCTGGAATT |
20 |
NA |
NA |
NA |
NA |
|
|
Z3490 |
25 |
TCTAGTCGGTCCTGAGGCGC |
20 |
GCAGGAAACATTGCATGACTCA |
22 |
141 |
|
165 |
|
|
|
Z3528 |
25 |
GCCAGAGGCTGATTGATAAACC |
22 |
ATGTGGCGCTAAGCACTTTTCC |
22 |
150 |
|
166 |
|
|
|
Z3632 |
25 |
GCCACACTGAAATGGTCTGTGC |
22 |
GGGGATGGTGGGCAAAGAGT |
20 |
203 |
209 |
201 |
|
|
|
Z3745 |
25 |
AGAAGACGGTTCCCCATCGC |
20 |
AGTAACTGACTTGCTGCCGCG |
21 |
121 |
141 |
137 |
|
|
|
Z3815 |
25 |
TCATACCAACTGGTCAGCCTGG |
22 |
TCGTGGGGCTCTATTTCCTTG |
21 |
NA |
NA |
NA |
NA |
|
|
Z4198 |
25 |
GGACATCCGCTATATGGGTGAC |
22 |
TGGATGCCCTTTCAACTGCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z4294 |
25 |
GGCCTGTAGAGCAGCAGAAAGC |
22 |
TCTGCTGTGGAGAATCAGCTGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4358 |
25 |
AAAGCAGTGTAGTCCTGG |
18 |
AAATGCTAAATCGTCTATGT |
20 |
NA |
NA |
NA |
NA |
|
|
Z4567 |
25 |
CCCAAACAGCGGCACCTTAG |
20 |
ATCCCAGTCCCTTGTAACGGTG |
22 |
235 |
|
243 |
273 |
Use at your |
|
Z4693 |
25 |
CAGCGCTTGATTCTGCCTCA |
20 |
TCTGCATGCTAACCGAGGAGC |
21 |
NA |
NA |
NA |
NA |
|
|
Z5030 |
25 |
CAGGCTTTTGTCTGCAAACTGC |
22 |
GCCTACATCTGCCCAAAAATCC |
22 |
117 |
|
119 |
|
|
|
Z5073 |
25 |
TGCAGTGAACCCCACAGAGC |
20 |
GATGTCATGCACCCCAGTGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z5229 |
25 |
TCCCGCTATTCTCAATCATCCA |
22 |
GCGTTGTTAACCTGCACCTTTT |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5659 |
25 |
CAATCGAATCACAGCTCTTGGG |
22 |
CGTTTCCTGAACACTCTGCAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z5669 |
25 |
TGTTGATCATCAGTTGCAGTGC |
22 |
GCCTCTGCAAACAAGTTTCCG |
21 |
215 |
229 |
217 |
233 |
|
|
Z6332 |
25 |
ACTCTGTTTGGTTAACGGGA |
20 |
TGCAAACAACTACAAATCTCCA |
22 |
290 |
310 |
278 |
|
|
|
Z6874 |
25 |
TGAGGTGCTGCAGGTGTTAG |
20 |
ATCCAGACCTCATCTGTCAATC |
22 |
? |
? |
? |
? |
|
|
Z6924 |
25 |
ATATTTCAGGCTTCGCATGG |
20 |
GGAGAACGCCAAGAAAAACA |
20 |
? |
|
? |
? |
|
|
Z7233 |
25 |
TCATCATTTATGCTGAGCACTG |
22 |
GACATCCAAACGGGATGAAC |
20 |
230 |
|
238 |
|
|
|
Z7306 |
25 |
TGCAGGTAAAAGCAAACCAA |
20 |
AATCCCTGCTGAATCCTCAG |
20 |
170 |
|
228 |
|
|
|
Z8224 |
25 |
GGCACAAACTTTCTTGGTATCA |
22 |
GACACCTTCCCACTATGTACCC |
22 |
103 |
149 |
131 |
|
|
|
Z8238 |
25 |
ATCAACTTCAGGCAAATGGC |
20 |
TGATGGTCCAACCTCACAAA |
20 |
150 |
|
148 |
|
|
|
Z8380 |
25 |
GATGCCTCCATTAAAGAGCG |
20 |
GCCGATGACAGCATGAGTTA |
20 |
124 |
|
112 |
|
|
|
Z8727 |
25 |
ATCCCTGTTTAGGGTCCCAC |
20 |
GATGACGGCATGTACACAGG |
20 |
260 |
296 |
188 |
194 |
|
|
Z8780 |
25 |
TCAGGGTCTCCATGTGTGAA |
20 |
CTGTGTGTTCATCCCACTGG |
20 |
85 |
|
81 |
109 |
|
|
Z9041 |
25 |
TGTTCAGCTCTCACTGGCC |
19 |
AGTGTCCGTCAAACATGAAGG |
21 |
NA |
NA |
NA |
NA |
|
|
Z9044 |
25 |
GCTCCATAACCAACATGCCT |
20 |
GGTGTCAATACCCCGCAG |
18 |
118 |
|
98 |
112 |
|
|
Z9290 |
25 |
GGCGGACAGCACAAGAGT |
18 |
CTCTTGTGGTCCAGAACTGTTG |
22 |
156 |
186 |
190 |
|
|
|
Z9352 |
25 |
TCATCACTTTTGTCAAGCGC |
20 |
CTCCAGTGTTCCTCTGAGGG |
20 |
213 |
219 |
205 |
215 |
|
|
Z10010 |
25 |
GCAGGATTTTTACAAGGTGACC |
22 |
TAGGAGTAATGGAGAATGCTGC |
22 |
244 |
252 |
244 |
|
|
|
Z10492 |
25 |
CAGTTTTCCCTCCTCTGCTG |
20 |
GGTCCAGGGTTACGTGGAT |
19 |
220 |
|
230 |
|
|
|
Z10578 |
25 |
GGCGACATCAGAATGGAGAT |
20 |
GCAGAGACACTGAGGGCTTC |
20 |
143 |
153 |
131 |
133 |
|
|
Z11083 |
25 |
CGCTTATGATGAGAGCAGCA |
20 |
AAGCCCTGATGTGTGGAAAC |
20 |
283 |
319 |
309 |
339 |
|
|
Z11092 |
25 |
AGCATCAGCCAGACACTCCT |
20 |
GAACACCAGGATCGCTCCTA |
20 |
145 |
175 |
137 |
|
|
|
Z11786 |
25 |
CAGCACAACCACCACAAAAC |
20 |
CATTGACGGACACCTTGATG |
20 |
137 |
|
113 |
127 |
|
|
Z11858 |
25 |
GTTCCACTCCACACAGCAGA |
20 |
AACACAGAGAGTGCGCTGAA |
20 |
124 |
128 |
134 |
|
|
|
Z13232 |
25 |
GCTGCGTGATATTCATGGG |
19 |
CTGTATCCTGCTATACAGCCCC |
22 |
111 |
|
103 |
|
|
|
Z13578 |
25 |
TGGAGGTCAAATTCACTCAGG |
21 |
TCAGTTCTTACTCACCCGGG |
20 |
139 |
|
119 |
153 |
|
|
Z13622 |
25 |
CCTCTATGAGGATCAAGCCG |
20 |
CCTGTCTGGGGCAACAGA |
18 |
|
|
|
|
|
|
Z15401 |
25 |
GAAATAGCAAGCTGCAGAAACA |
22 |
AGGGTCATTTGAAGACATCCC |
21 |
|
|
|
|
|
|
Z15480 |
25 |
AACCCATCTATTCTGTTGGTCG |
22 |
ATGATGAAGGTGTCGCTCG |
19 |
150 |
|
162 |
|
|
|
Z20048 |
25 |
ATGTGCACATACAGGTCCGA |
20 |
TGATTTGTGTGTTTCGGATCA |
21 |
197 |
|
199 |
|
|
|
Z20832 |
25 |
ACGAGAGCTGGAGGATGAAA |
20 |
GAATGCTAGGATATGGTGCGA |
21 |
221 |
|
299 |
221 |
|
|
Z21055 |
25 |
TGCATCATAACAGCACCCAT |
20 |
CTGGAAGATTGTGTGGCTCA |
20 |
147 |
|
139 |
143 |
|
|
Z21181 |
25 |
CCTACAATCACCTCCATCACC |
21 |
TGGAGGAGACTGCATGAGTG |
20 |
231 |
243 |
215 |
235 |
|
|
Z21302 |
25 |
GATTCCCATGGCAAACATTC |
20 |
TCCTCATCCTCACAGCCTCT |
20 |
159 |
n |
161 |
165 |
|
|
Z21722 |
25 |
TGTGACCACACAGAGTGGGT |
20 |
AGGCCACATATCTGAAACGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z21929 |
25 |
CATGACGAAGGTGATGATGC |
20 |
TGACCACACTGGACATGAGAA |
21 |
181 |
|
117 |
183 |
|
|
Z22028 |
25 |
AAAAGCCCTGCAAGACAAGA |
20 |
GTGCTGACAGAGCAAATGGA |
20 |
247 |
261 |
247 |
277 |
|
|
Z22245 |
25 |
CAACAAGGTTTCACCCAACC |
20 |
CAATGGACTCGCTATCTGCA |
20 |
225 |
241 |
219 |
239 |
|
|
Z22653 |
25 |
TCGTTTGTGGATCTTGACGA |
20 |
GACGAGGCCTGATGAAAGAG |
20 |
NA |
NA |
NA |
NA |
|
|
GOF1 |
25 |
AAGAGAGCAGTTCAGGATTTGC |
22 |
CTGTAACGCTGTACCTCAGGC |
21 |
121* |
NA |
NA |
NA |
"Goff, et al, |
|
GOF15 |
25 |
ACATGTTCAGAGACGCCAGA |
20 |
ATTCTGAAACCTGAGGCCCT |
20 |
116* |
NA |
NA |
NA |
"Goff, et al., |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
