Linkage Group 19

Linkage Group 19 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number	Linkage Group	Forward Primer Sequence	Length	Reverse Primer Sequence	Length	AB_1 Size	AB_2 Size	In_1 Size	In_2 Size	Comments	dbSTS Accession
Z1799B	19	AGCGCTCCTCCGTCTGCTGT	20	TCCGCGTCCATCACTGCGGG	21	NA	NA	NA	NA
Z7	19	TCATGAGCAGCGTTTTTCC	19	AAAGCACCATCCCACAAAAC	20	147		143
Z160	19	CGCTACCTGAAGGACACCAT	20	CTGCTATTGCTATACTTGTGGGG	23	NA	NA	NA	NA
Z553	19	GGCGTAATCCTCATTCCTGA	20	CAAACTGTGTTGTGTGTTTTTCTG	24	NA	NA	NA	NA		G41409
Z1234	19	CATTTAGATTAGGCCTTCCGG	21	TATTACTGTTTACTTTCAGTGTGGCC	26	NA	NA	NA	NA		G41346
Z1247	19	GGAGGAGCAGCTCTGCAG	18	GTTAACCACTGAGACACCACTCC	23	NA	NA	NA	NA		G41347
Z1271	19	CCGACGAGACCAAGATCAAG	20	GTGACATCAAGTGTGTATCCGG	22	NA	NA	NA	NA		G39993
Z1422	19	ACTCATGCATGAGGTCAGTCT	21	TCATTAAACAAAGATGTGATGCTAA	25	NA	NA	NA	NA	Use at your own risk	G40115
Z1544	19	ATCGGGAACTTCCTGAACG	19	GATCGAAGCCCTTAGCCTG	19	NA	NA	NA	NA		G41391
Z1625	19	TGGGATACCTGACATCCAGACC	22	GCTTGAGTGAGGACGCGGTT	20	211		167			G41392
Z1628	19	CAGTATCAGCACACGTGCATGC	22	CCGTATGAGGATGTCCACGC	20	186		166			G41394
Z1632	19	GCGCATCCTCCTCCTCATCT	20	TCAGATCTCCTTCAGCCTGTCA	22	NA	NA	NA	NA		G41395
Z1651	19	CAGGTACAGCAGTTCCCCATG	21	CACGTACAGCGTCAGCCTGT	20	NA	NA	NA	NA		G41398
Z1803	19	CAGAACCCTGCTGTTCCAGAA	21	AGGTGCACCGTCTGGATCTT	20	189		175	183
Z3023	19	AGTTTCATTGTCCAATCACTGTAC	24	GGACTGCAAAAACTTTGAAGCTC	23	NA	NA	NA	NA
Z3086	19	CGAAATCCCCTGAAATCTGCC	21	CACACTATGCAGCTCAGGGGC	21	NA	NA	NA	NA		G40330
Z3214	19	CGTCATTGTGAGTCACTGCTGA	22	TTACACAGCCCAGCAGTCCG	20	NA	NA	NA	NA
Z3384	19	TATTAGAGGTCTGCATTTCCG	21	CTATTGCACAGACAGCATCACA	22	137	169	n		Use at your own risk
Z3606	19	AGACAGTTTGTGTATGCGTGCG	22	AATCACTCCTCATTGGCTGCTG	22	160	178	n		Use at your own risk	G40339
Z3770	19	AAAGCCTGAGGGACGCACAG	20	TTCAGTGAGGGGTAACGGTGG	21	NA	NA	NA	NA
Z3782	19	AATTCTGGGGGGTAATTCTGGC	22	AAGGGGGCTAAACCTTCAACTG	22	93	115	143	201		G41464
Z3816	19	AGATCAGGTGCACAGTGGCG	20	CCACTGAAGGGCAAGTGGCT	20	NA	NA	NA	NA
Z4009	19	TAATGGTTGCCCCGTCCATC	20	TCATGCTGCAAACCCCAGTC	20	281		233
Z4374	19	GCATCTTGACTGTGAAAGT	19	TTCTGTTGGCTATAATAAGG	20	NA	NA	NA	NA		G40359
Z4379	19	TCACACGCCGATCCACATTT	20	TGAATGGTCCCGTTTGTCATT	21	NA	NA	NA	NA		G41512
Z4825	19	AAGCTGCATCCCATCACTG	19	AGAACGGCTAAATTTGGTTGG	21	NA	NA	NA	NA
Z5183	19	ACAATCACTTTTGCTCTGGGCC	22	CCGCCATTGCAAACAGTCAC	20	147		143			G41561
Z5352	19	TTGCCCTGCTATCAAGGGTTG	21	CGTGCATCCAGCAACCAATC	20	149		147	151		G41573
Z5583	19	CGGAGCCACTCAGATCAGCA	20	ACCTCTGAGAACGCAGGTTTGG	22	NA	NA	NA	NA	Use at your own risk	G41590
Z5675	19	GATGAGGGTGGGCTGGTTTG	20	TGACCCCTGTTTGACCAGTCTG	22	NA	NA	NA	NA		G40397
Z6045	19	CTGCAGGCGCAAATATAACA	20	GGGGGGGCTAATAATTCTGA	20	151	165	149			G41102
Z6079	19	TTGTCTCAATGCATCTTGCC	20	AATGCACAAATCGTGAGTAAAA	22	280		290			G40400
Z6192	19	GCGCAGGACTACATCTCCTC	20	TGTCCTTAGGCTGCCTGTCT	20	185		217			G41821
Z6275	19	TGCCATCTTCTCCTGCTGG	19	AAAGCAATGATTTTGCTTGTG	21	239	271	239	245		G39562
Z6412	19	TGCAGAATCATATTCCTGTTCA	22	CAACAACTTCTGATTCATCTGG	22	106		122	168		G40433
Z6589	19	TGTGCTGGAAAGCTCATCC	19	GTGCAGGGGAAGAACAAGAG	20	249		239	255		G41122
Z6661	19	CCTCCAGGATCCTGCAGAAA	20	TTCTCTGACTGCCCTCGG	18	154		138	142		G41822
Z7007	19	TTCAATGAAGATTGGCCTCC	20	TCTCAAATCATTCAGATAGAACCTT	25	?		?	?		G40492
Z7058	19	CTGCAGGCCCTGAACATC	18	AGAGTCTGTGTCAGCCGCTT	20	163		147	173		G41770
Z7235	19	TGATTCAAAGCAGAGGCTGA	20	TTCAAGCACGGATTTGAAAA	20	NA	NA	NA	NA		G40525
Z7265	19	GCAGCAACTAATTTGCATTTAA	22	GGTCTCAAGTGTCCCCAGAA	20	155	191	159	195		G41144
Z7338	19	GGGAGAAGCAATGTTTGGAA	20	CATGTGCTCACACAACCACA	20	276		266			G40543
Z7430	19	CTCGCCAGAGACATGTAGTCA	21	CCGGTGCTCATCTGGATC	18	263		317
Z7450	19	TCTCACTCATCCAGATCATCTATCA	25	TCACTGGTAAACACTGTCAGCA	22	225	231	177	183		G40557
Z7686	19	CACCTCAGTCCTGTGAAGCA	20	CATGTTTGCTCCAAAGAGCA	20	163		179	187		G40591
Z7926	19	GCATCTGTGCATGGGTACAG	20	AATCCATCGCATCTGTTTCC	20	148	208	184	228		G40610
Z7948	19	GAACAGAGGACACCACTGCA	20	TCGACTCTTATTTGCTCCGTG	21	221		211	255		G40612
Z7964	19	CCCATAATGCCTCTGCAGAT	20	TGAAAGGTATGATTGGAACCC	21	186		234			G40617
Z7981	19	TTTTGCACGCACTTCTTCAC	20	TGCAGGATGTTTTATTCTGGG	21	164		142	162		G40620
Z8487	19	CTGGGCAGATGAACCTGAG	19	GGCCTGCAGACTGGTACAGT	20	254		204	230		G41677
Z9050	19	AATCATTCACTTTCACACGGC	21	TGTGAGTCATCAGTGGAAAACC	22	118		114	140		G40718
Z9059	19	TTCCTGGCAATGTTGTTTTC	20	TGCTACTGTTGAAAACACGTCT	22	252	258	186	246		G40722
Z9252	19	TGACAACACTCTGTCAGCACC	21	GCATACAAACAGGGGCAAGT	20	193		201	205		G40758
Z9331	19	GGATAAATCCTGGCCTTTCC	20	CAGACACTGCAGAGCTCGAG	20	275		269	289		G41644
Z9384	19	CACCTTTGCCTTGTTTGGAT	20	AGCATAATCAGACAACCGGG	20	115		91			G40783
Z9468	19	CTGTTTCCATGGAGATGGCT	20	TCTGTATCTCTCACACGCGC	20	157		161	179		G40797
Z9512	19	TGCACACACTCGCATGACA	19	ATGGCCTCTGTGCCTCTG	18	160	164	162	180		G41184
Z9595	19	AAAAACACACATGCACGTGC	20	GTCTTTGCGTGTCTGTGCAT	20	?		?	?		G41187
Z9861	19	TCCACAGCATCGTCCAAAT	19	TGCAGTAAAGCGGCTCTGAC	20	133		119	147		G40850
Z9992	19	CAGTTCATCAACACCCTGCA	20	GGCAGAGTGTGTTTTAGGTGTTC	23	138		138	166		G40876
Z10002	19	CGACGGAGCTTACACAACAA	20	TGATGTCATTGCTCAAAGGG	20	109		93	105		G39737
Z10220	19	GGAATTTCAGCACGGTGTTT	20	GCAGCATTTTCAGAATTGCA	20	275	289	265	283		G39766
Z10273	19	CAGGGGTGTGGCTTATCTGT	20	TCAGCACTGCAGATCTCAGG	20	144		132	148		G39772
Z10885	19	CCTCCGCTCCATTCAGAATA	20	CTCCTCCAATCAGATGTGCA	20	198		148			G39838
Z10996	19	CCAGAACACAGGGCTTTCTT	20	CTTTTTCCTCTCGCGTTTTG	20	139		159	165		G41711
Z11027	19	GCCTTATTTTAAAGAACGCGTG	22	GTAGCAATCAGCAGGGAAGC	20	241	247	243	249		G39859
Z11031	19	TAACGGCATTCCTGAAATCC	20	CACCCAAGCCGCTCTATAAA	20	281		265	271		G41712
Z11380	19	CTGTGCTCAAGAGGAGGGTC	20	AAAGCAGTTCTTTCCCGTGT	20	92		108			G39902
Z11403	19	TTTGTTTTAAGCATTGCCGA	20	GCATTTTGACTCCACTGGGT	20	177	253	169			G39907
Z11506	19	TGATGCGCTTGTTTTTAACG	20	CACTCAGATATGCGTTCATACAC	23	296		292			G39922
Z11872	19	TGTGGAGGAAGAAGGAAACG	20	ATGTGGGAGTTTTGCACCTC	20	135	183	133	143		G39968
Z11989	19	ATGTGTCGACGGTGTGAAAA	20	GCAAGAGTGTGTGCGTGC	18	145		129	137		G39980
Z13215	19	GTGTTGATCCCCTGGGCA	18	ACAAGTCCCCACAAGGTCAA	20	124	126	118
Z13292	19	CAAGGCTGGCGTTATCAGAT	20	GACCACCCACATAAACCCAC	20	216	230	224			G40003
Z13345	19	TCTGGACTACACTTAACATCACTGC	25	CAAATCAAGACGCTCTTGCA	20	134	136	142	144		G40011
Z13509	19	GTTTCTGGGCTCTGAAGACG	20	AAACAGAGCGTGATGCTCCT	20	270		264			G40030
Z13585	19	ATTCCACAGCCATGTGTCCT	20	GATGTGCCACACCAACAGTC	20	169	173	163	171		G40042
Z13727	19	AGGATGCAGGAGAGTGATGG	20	GGAACCATTAAGAGTCCGCA	20	159	237	205			G40067
Z13773	19	CCCTCTCCTCAACCATAGCA	20	CTGGCATGTAGCACCATACG	20	103		111	115		G40071
Z15451	19	TTGCAGCTACATTTGCGTCT	20	TCAAGAATTGTGTTGTTCCAGC	22	?		?			G41099
Z20054	19	TGGCTCCCTCACACATTACTC	21	TCATACTGGAGCAGCTGTGG	20	124		88			G40152
Z20396	19	GCCCAAACCTGAGGGATACT	20	GAGCACTTCATGCAGGATCA	20	142		166			G39253
Z20773	19	CAGCACAAATCATTGGCAAC	20	CCCAAAACACACATAAAAACAAA	23	109		115	125		G40201
Z21077	19	CTTTGATACCACCCCAAACG	20	AGGCTCATCAATCCCACATC	20	247		249	253		G41738
Z21492	19	TACGGCACGCAGATGTTAAA	20	CCACGAGTGTTTAGCTGCTG	20	308		256	370		G40260
Z21694	19	GCCTCAGTTTCTGCAGATACTTTT	24	AGGAAAAGCGTGAAAGCTGA	20	126		134			G41745
Z22532	19	GCTGGGAATAAAGGACACCA	20	CAGGTGCTGTTTTCAAGCAA	20	NA	NA	NA	NA		G39488
Z22649	19	TGACGTCTGCAGTGAGATCC	20	TACACACACCAGGGGACTGA	20	NA	NA	NA	NA		G39503
Z22818	19	AAGAATCCCGGGATGAAGTT	20	TACTCAGAGGCCCTGAAGGA	20	NA	NA	NA	NA		G41748

Legend

Table generated Wed Oct 7 16:28:07 1998