Linkage Group 05 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Z3763B | 5 | CCAATTAACGGAAGTGAACCGC | 22 | GCACTGGATCAGTCCCGCTT | 20 | 190 |
| 180 |
|
|
| ||
Z13 | 5 | CACGTGCTGATGCAGGAC | 18 | GATGACAGCCAATCAGAGCA | 20 | 144 |
| 150 |
|
|
| ||
Z379 | 5 | AGCCTTTCACTGGCCCTATT | 20 | CAAGGTGGAGTAAAAATCCTGC | 22 | 260 |
| 252 |
|
|
| ||
Z647 | 5 | GTGAGAGGTACGGCAGGAGA | 20 | AAACAACCCTGCATCCACTC | 20 | 249 |
| 283 |
|
| |||
Z896 | 5 | ACAACCACAGCATGACCTCA | 20 | ACAAGTGCTGCAGAAGATGTATG | 23 | NA | NA | NA | NA |
| |||
Z1167 | 5 | TCCCTTTGTAACATCGGCTC | 20 | AAGCCCCGACTACTGTCTGA | 20 | 179 |
| 171 |
|
| |||
Z1202 | 5 | GTCAGGACCATACCCAGAGC | 20 | CAGCGACTGACGGTTCTGT | 19 | NA | NA | NA | NA |
| |||
Z1390 | 5 | TGAGATTTGAAAAGAGGTTCTGC | 23 | GTTGTGTATGTTACTTCAGCAGTGG | 25 | NA | NA | NA | NA |
| |||
Z1419 | 5 | TGGTGGACGAGGAGAAGC | 18 | ATCTAACAGGTGTCCGGTGG | 20 | NA | NA | NA | NA |
| |||
Z1454 | 5 | TTGGAGACTAGAAGCGGGATGA | 22 | TTTACTGTCATCACGGCAAAGA | 22 | NA | NA | NA | NA |
| |||
Z1492 | 5 | GAGCAGCCACTCAGGTGAG | 19 | AGATACTGCTGGAGGGCTCA | 20 | 246 |
| 214 |
|
| |||
Z1677 | 5 | CCGTGAGAGACGGAGATCATG | 21 | GACAGGTCACACGGATCAAACG | 22 | NA | NA | NA | NA |
| |||
Z1813 | 5 | GGCGCTCTCTACTGGCCAAA | 20 | TCAGCAGGGCCAGTTCACAT | 20 | NA | NA | NA | NA |
|
| ||
Z1842 | 5 | AGCACCCGGAGGAAACCAAT | 20 | AGCCAAACTCTCCCAACAGCC | 21 | 196 |
| 198 |
| Use at your | |||
Z3060 | 5 | GCCAACATCCTGCAGATTTTAA | 22 | CAAACCTGGAGGACCAATGTCC | 22 | 194 |
| 164 | n |
|
| ||
Z3193 | 5 | CAAGGCATACCATGAGGGAAGG | 22 | TTGTCATCCGTTATGCCCTCC | 21 | NA | NA | NA | NA |
|
| ||
Z3334 | 5 | AACAGGGGGCTAGCAATTCT | 20 | TGCACTTTTGAATGACGACA | 20 | 144 |
| 150 |
|
| |||
Z3516 | 5 | GCACATCAGCTCCTGTGAGAGG | 22 | TTCGCACATGCTAAAACACACG | 22 | 107 |
| 105 |
|
| |||
Z3804 | 5 | CACGTGCTCAGAGCTCCAGC | 20 | GTGAAGCGCGTGCACATAGG | 20 | NA | NA | NA | NA |
| |||
Z3863 | 5 | ATGCAAGCATAGATCCGACACA | 22 | TGTCGGATCGATGCTTGCAT | 20 | 171 |
| 181 | 191 |
|
| ||
Z3902 | 5 | GCCACCATGCCACCACATAA | 20 | CAGGCGAGCCTTGGAAAGAA | 20 | 215 | 217 | 191 | 209 |
| |||
Z4246 | 5 | CCAGCACCTTGTTGAACCTGG | 21 | GCCGGATTTCCTGGAGGTCT | 20 | NA | NA | NA | NA |
| |||
Z4299 | 5 | AGGAATGCGCTATGGGACGA | 20 | CACATCTGCCACTGAACCGG | 20 | 308 |
| 202 | 206 |
| |||
Z4348 | 5 | GTCCCATGTTTAGCAATGCCG | 21 | ACACCCTCCTGAGTTCCTCCA | 21 | NA | NA | NA | NA |
| |||
Z4760 | 5 | AATGTCAAGGACGCATGGCA | 20 | CAAAGACCCACACGAATGAACG | 22 | 253 |
| 271 |
|
| |||
Z5208 | 5 | CCAAGCAACTTGAAATTTGCCA | 22 | TGCTGTAACCACTGAGGTTGCC | 22 | 341 | 351 | 347 | 359 | Use at your | |||
Z5260 | 5 | CGGCGTGATGAGTGCAAAAC | 20 | CGGCTGTTTGTGTCAGAGTTGC | 22 | 232 |
| 230 |
|
| |||
Z5473 | 5 | GTCAAGACCAGCAAACCCAGTG | 22 | TTTGCAAACACTTGATGGGGA | 21 | NA | NA | NA | NA | Use at your | |||
Z5538 | 5 | TCAGCCACATTAGGGGAAAGC | 22 | GCCATCCATGTTGGCTGTAGG | 21 | NA | NA | NA | NA |
| |||
Z5552 | 5 | AAATGCTGTGCACCGTGTATGC | 22 | ACCCTGGGTATTTTGAGCTGAA | 22 | 231 |
| 235 |
|
| |||
Z6094 | 5 | TACAGATGGGGCCAGCAT | 18 | ACCTCTCTGCCCTTCACAGA | 20 | 179 |
| 173 |
|
| |||
Z6132 | 5 | GCCATGCATATTTACATCAGG | 21 | ACAGGTGTCAGATCAGCAGTG | 21 | 93 | 97 | 109 | 119 |
| |||
Z6323 | 5 | TTTGCACTTGAAAGGGCTTT | 20 | CCTTGGGTACACTTGGCATT | 20 | 155 |
| 113 | 167 |
| |||
Z6371 | 5 | CTGCGTATACATTGAGTGGCT | 21 | GAGAGCGCACCTGTACTGG | 19 | 217 |
| 131 |
|
| |||
Z6614 | 5 | AGCGCTTAGATCAGTTTAACAG | 22 | GTGTGCTGGAAAGCTGTGAA | 20 | 193 | 217 | 197 |
|
|
| ||
Z6727 | 5 | TGGCCACATTTATCTCGTAGG | 21 | ATGTGACCACTGAGTGGGAA | 20 | 291 | ? | 319 |
|
|
| ||
Z6803 | 5 | CTGCTGTTGTCGGAAAAACA | 20 | TCACCCAAAACTGGTCATCA | 20 | 220 |
| 174 | 228 |
| |||
Z6880 | 5 | TTGAAATGTCACCGTTGCAT | 20 | ATCATCAGCATGGTGCTCAA | 20 | 145 |
| 125 | 127 |
| |||
Z6916 | 5 | TCTGTGCCTGAGTCTTGTGC | 20 | TCTCAGAACTGCTGAGAATGAC | 22 | ? |
| ? | ? |
| |||
Z6981 | 5 | CTGTGTCCGATAAACAGCACA | 21 | TCACCCTCTACGTCTGTCTGC | 21 | 275 |
| 301 |
|
| |||
Z7121 | 5 | CTTGCCTGATTGGTTCATCC | 20 | CCAACTCAGGGGAGTGTTTC | 20 | 228 |
| 346 |
|
| |||
Z7223 | 5 | TCATGAGCCACTGGCATTTA | 20 | CATGACACATGTGATTGAGGG | 21 | 202 | 206 | 146 | 156 |
| |||
Z7226 | 5 | GCAGGTGAAGCGCTTTATTC | 20 | ACAGAGTACTGAGCGCATGTG | 21 | 241 |
| 233 |
|
| |||
Z7257 | 5 | GGCAAAGTAATGGAGCCAAA | 20 | CCAAACTCTGTTTTGTGCCG | 20 | 242 |
| 236 |
|
| |||
Z7291 | 5 | CACTGTGACTGGGAAACACAG | 21 | TCAAAAACATCACCATTCGTG | 21 | 100 | 138 | 166 |
|
| |||
Z7313 | 5 | TGGGCTCTGCTCATCTCC | 18 | GCAGCACGAGATGCGAAT | 18 | 157 |
| 117 |
|
| |||
Z7315 | 5 | CGTCTGAGTTTTGCTTCTGCT | 21 | TTTGCATGTTTATGCCGAGA | 20 | 257 |
| 247 |
|
| |||
Z7318 | 5 | CTGCAGATGCATCCAAACTC | 20 | TGTTTGGAAAGTGGAGGAGG | 20 | 215 |
| 203 |
|
| |||
Z7339 | 5 | TGGAGTCCTGGTGGGTTTAA | 20 | GGCATAAGCAGCATGTCAAA | 20 | 257 |
| 239 |
|
| |||
Z7351 | 5 | CTCCGGTCCAGTTTGCTTTA | 20 | TCGTTTTGACATCAAGGTGC | 20 | 225 |
| 235 |
|
| |||
Z7428 | 5 | ATTGGGTGGTTGTGCATTCT | 20 | CTGTCCAATCTCGCTGTCAC | 20 | 200 |
| 172 |
|
|
| ||
Z7685 | 5 | AGACATCAGCATTCGGGC | 18 | GGGCTCCTTTTATGCTTATGG | 21 | 205 |
| 183 |
|
| |||
Z7824 | 5 | CTGGTCCTGAGGGATGGC | 18 | TGATGAATGAAGGCGGTGT | 19 | 125 |
| 115 | 129 |
| |||
Z7977 | 5 | CATTTGTGCCACATGTCCAG | 20 | TATGTGCGCATTCACACTCA | 20 | 245 |
| 249 | n |
| |||
Z8003 | 5 | TGGGAAAAGGGATCATATGG | 20 | CAACAGGGAAAATGCTCACA | 20 | 217 |
| 211 |
|
| |||
Z8122 | 5 | CTCATGGCAGCCCACTATTT | 20 | TTGTCTGCAGGTCGTGTCTC | 20 | 263 |
| 255 | 269 |
| |||
Z8444 | 5 | ACACAGCCTGTCAGTTGTGC | 20 | GCCAATGGATATGGATACGG | 20 | 239 |
| 229 |
|
| |||
Z8921 | 5 | GCATGTGCCTGATTGCAG | 18 | ATGCACAGAACTTTGTGCCA | 20 | 105 | 111 | 123 |
|
| |||
Z9022 | 5 | AGACGCCATCGATAAAGGC | 19 | AGAAGGGGGGATCAGACACT | 20 | 101 |
| 151 |
|
| |||
Z9028 | 5 | CTCCCAGCTGTAAAACCAGG | 20 | ATGGCAGTGAGGCTTTATGG | 20 | 110 |
| 102 | 108 |
|
| ||
Z9106 | 5 | GGCCATGATGGAGTGAAGTT | 20 | GAAAGCGCATACCTGTGTGA | 20 | 147 |
| 141 | 149 |
| |||
Z9109 | 5 | AGCAGATCATATTAATGCGCC | 21 | TGCAGTTCAGGCCTCCTC | 18 | 142 |
| 136 | 166 |
| |||
Z9185 | 5 | GTGTGGAGAGTTGGATTCATCA | 22 | ACCCGTCCACAGCAGTGT | 18 | 144 |
| 150 |
|
| |||
Z9345 | 5 | TCAGCTGACTGATCCCACAC | 20 | CTGTGTTTTGATGGGAGGGT | 20 | 173 |
| 163 | 165 |
| |||
Z9419 | 5 | AAAACCAAGGGGTTGCTTCT | 20 | AATTTCGTTCTGCACAGCCT | 20 | 263 |
| 277 |
|
| |||
Z9435 | 5 | GGCAGAACCGAGCCATAATA | 20 | CAGTAACGGGAAGCTTCGAG | 20 | 241 |
| 279 |
|
| |||
Z9568 | 5 | ATCTAGTGGCGCCAAATGAC | 20 | TCGACAAGAACTTGATTTGCA | 21 | ? |
| ? | ? |
| |||
Z9815 | 5 | CCAAGCCACTGAAACTGACA | 20 | TCTGAGCAATTAATCTGAGCAA | 22 | 214 |
| 234 | 290 |
| |||
Z9856 | 5 | TTGCTTGTTTACATGGCTGC | 20 | GCCAGACTGTGACCAACTGA | 20 | 131 | 195 | 141 |
|
| |||
Z9871 | 5 | TGTGAATCCATGGGAATGAA | 20 | CCACATCTGCCATGAAAATG | 20 | 198 |
| 270 | 320 |
| |||
Z9969 | 5 | TCTTTTTCCCACTGTACCGG | 20 | CTTTATTCCCCTGCAGACGG | 20 | 109 |
| 87 |
|
| |||
Z10456 | 5 | GTGGATGACCACTGAGCAAG | 20 | ACCCTCAGCTGCTCTCTGAG | 20 | 127 |
| 143 |
|
| |||
Z10484 | 5 | AGCGTGACCGACCTCAAC | 18 | ACTGGGCCTGAGTGTTTGAT | 20 | 244 |
| 186 |
|
| |||
Z10517 | 5 | TGGTGGGTACCTTAATCCCA | 20 | GGTTGGCAATCACAAACACA | 20 | 238 |
| 208 |
|
| |||
Z10663 | 5 | CTTCGCTCAGCAGCTCTTTT | 20 | GTGGAGACGTCAGCAGATGA | 20 | 205 |
| 195 |
|
| |||
Z10665 | 5 | GATCCCAGAAGGAACAACGA | 20 | ATTACAGGTTGGTGGTGGGA | 20 | 102 |
| 96 |
|
| |||
Z10807 | 5 | TTTCTCATGCCGCTCTTTTT | 20 | GAAGAGTTATCGCTGTCGGC | 20 | 212 | 214 | 218 | 258 |
| |||
Z10827 | 5 | CGCCACTTCACACAGTGTTT | 20 | AACTCGGCCTCTGTTACAGC | 20 | 202 |
| 220 |
|
| |||
Z11311 | 5 | CAGCTGACCGTTTACAGTGG | 20 | AGCGGCTCCTTTATTAGGAG | 20 | 221 |
| 219 |
|
| |||
Z11349 | 5 | CCTGCTCCCATCATAAGGAA | 20 | CCGCTCTGAATGATAGCAGA | 20 | 138 |
| 128 |
|
| |||
Z11496 | 5 | GAGCACAATAAAAGTCCCGC | 20 | TGCTTCAGAAAAGCACATGG | 20 | 264 | 280 | 250 | 254 |
| |||
Z11632 | 5 | GCCTGTGATAAAAGCCAGGA | 20 | TACTGGTGCCCTGCTCTACC | 20 | 209 |
| 199 | 211 |
| |||
Z13279 | 5 | CTCCCTAAGCATGATGCACA | 20 | CTGGTCTTCCACGTTGGG | 18 | 256 |
| 240 |
|
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Z13304 | 5 | TTAACGATGCCACCTGATCA | 20 | TTCTTTTGGTGCAGATCGTG | 20 | 296 |
| 326 |
|
| |||
Z13442 | 5 | TCCCCACATTAAACATGGGT | 20 | TCAGTTTCACGTCAGCCATC | 20 | ? |
| ? |
|
| |||
Z13641 | 5 | CGGCATATGTATGTGCTTGG | 20 | CTGACGTCTCTCTCCCAAGG | 20 | 237 |
| 239 |
|
| |||
Z13833 | 5 | AACCTGCCAGAGGGGTTACT | 20 | TCAACAGATGGCTTCAGTGC | 20 | ? |
| ? |
|
| |||
Z13866 | 5 | TGAAACGCTTTGCAAGAATG | 20 | TTGTGGGACTTGGTGAGGAT | 20 | 205 |
| 201 |
|
| |||
Z13883 | 5 | CCTCCGAGACTGATGAGCTC | 20 | CTCTGGATCCTCAGCAGGTC | 20 | ? |
| ? | ? |
| |||
Z14069 | 5 | ATATCAGCGCTGCTGTTGTG | 20 | CTGGAGGAGCTCCTGAACAC | 20 | ? |
| ? |
|
| |||
Z14077 | 5 | CTGTAGCCTGCAGTGTTGGA | 20 | CACCAGAGGGTCGTTTGTTT | 20 | ? |
| ? | ? |
| |||
Z14143 | 5 | TAGCACCCTCAGGCAGAGTT | 20 | AGACATTTCCCTCACACGCT | 20 | 142 | 170 | 166 | 182 |
| |||
Z15414 | 5 | ACAGGAACATCTCCTTCCACA | 21 | ATTTGTCCGACGGGTCACTA | 20 | 202 |
| 130 | 212 |
| |||
Z15424 | 5 | GACCTTGTCCCTTTCTCGTC | 20 | TTGTTGGGAACAGGGAAGAG | 20 | 273 |
| 279 |
|
| |||
Z20148 | 5 | CATCTGCAGACGGACATCAC | 20 | CAGGACGGCCTGGACTATAA | 20 | 245 |
| 219 | 231 |
| |||
Z20480 | 5 | CCCTCTCTGCACAGCTGAG | 19 | TCCCTCTGGCTGGTGTCC | 18 | 271 |
| 135 | 251 |
| |||
Z20915 | 5 | CCTGCCCTCTGCAGAAAATA | 20 | TTCTCCACGTAACTCCAGCA | 20 | 196 |
| 144 |
|
| |||
Z20951 | 5 | TCCCACACAGAATGTCTCCA | 20 | TCAACGCCATCAGAGATGTC | 20 | 134 | 136 | 138 |
|
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Z21057 | 5 | GCAGCACGACTGTCACTGTT | 20 | CTGACTGAACCACATTTCTGAA | 22 | 199 |
| 217 |
|
| |||
Z21290 | 5 | ATGCATGCACAATGTGTGAA | 20 | TGATGCCTTCAAGATTGCTG | 20 | 166 |
| 148 |
|
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Z21461 | 5 | TGGGGAGTAGTTGGGAAGAA | 20 | GCTCAATTTTGGGACTTCCA | 20 | 206 | 220 | 192 |
|
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Z22152 | 5 | TCGGAGTGGGTGGACTTTAC | 20 | ATGATAACACGGCCATCCAT | 20 | NA | NA | NA | NA |
| |||
Z22208 | 5 | CGCTACAGCATCCACAGAGA | 20 | ACCTGTGCTTCTGGAGAGGA | 20 | 277 |
| 315 |
|
| |||
Z22250 | 5 | CTCATCCCCTTTTCTCCACA | 20 | GCGTTAAGTGAGGATGGCAT | 20 | 208 | 210 | 208 | 216 |
| |||
Z22309 | 5 | AAACATTTCCTGCCCCTCTT | 20 | TGGCATTTTCAGGTTGATCA | 20 | 214 |
| 198 | 218 |
| |||
Z22523 | 5 | CTCCACTGCCATCTGACTGA | 20 | TGCATCTTACGCTTTGTTGC | 20 | 190 | 200 | 186 |
|
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Z23075 | 5 | GCTTTCCTGGCAGTCAAAAC | 20 | GCATGCAGGAACAAGTGCTA | 20 | NA | NA | NA | NA |
| |||
Z23076 | 5 | TGGACTGGGGCTTATAGTCG | 20 | CCACCTTTTGTCAAGGGTTG | 20 | NA | NA | NA | NA |
| |||
GOF22 | 5 | ACCATCGAGGAGCAGAGCT | 19 | GCAATCCCAATATACGTGCC | 20 | 126* | NA | NA |
|
| NA | "Goff, et al., |
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