Zebrafish Genetic Map: Primers Page
This table contains the primer sequences for the microsatellite markers on the zebrafish genetic linkage map, as published in Nature Genetics: A Microsatellite Genetic Linkage Map for Zebrafish (Danio rerio), Ela W. Knapik, et al.
The primers are available from Research Genetics.
Primer |
LG |
Forward sequence |
Bases |
Reverse sequence |
Bases |
PCR Product Size |
|---|---|---|---|---|---|---|
BMP4 |
17 |
CTGTGAGGAGCTTCCATCACGAA |
23 |
GGAATCGGCAGAGGCTGTCTCC |
22 |
160 |
msxD |
21 |
AGCTCCGTCTTCACTGACTGACA |
23 |
TGTGGTGGACATTAACTCATCCA |
23 |
240 |
Z4 |
14 |
TCAGAGGAGCGCATGAAAGT |
20 |
CTGAAAACACCCATCACGTG |
20 |
119 |
Z7 |
19 |
TCATGAGCAGCGTTTTTCC |
19 |
AAAGCACCATCCCACAAAAC |
20 |
145 |
Z13 |
5 |
CACGTGCTGATGCAGGAC |
18 |
GATGACAGCCAATCAGAGCA |
20 |
144 |
Z16 |
21 |
ATACTCAAACACATCCCAGCC |
21 |
GAGGTGCACGTCAGCGAC |
18 |
150 |
Z18 |
21 |
CTCTTTTGCCTCCTCTCGG |
19 |
CAGCCTTAACACTGTGTCTGTG |
22 |
147 |
Z23 |
2 |
TGTAGATTAATGCTTTTCTGTGCA |
24 |
GCATATGAAGCAGGTCTGCA |
20 |
133 |
Z24 |
15 |
CACCTTCACGGTGAGTAGCA |
20 |
GTGGAATGGTGTGACTAATGTCA |
23 |
149 |
Z28 |
13 |
TCTGGTGGACTCGCTGAAG |
19 |
AAGTAAGCGCCACCAGAGTG |
20 |
141 |
Z37 |
15 |
GGTGTTCGCGACCAAGTC |
18 |
TTTGCGTGGAATTTGAACTG |
20 |
83 |
Z46 |
2 |
GCTGTGTGTGCCTCATCTGT |
20 |
GCAGACGCTGTACTCCATCA |
20 |
224 |
Z49 |
25 |
GATTATCCTCATAAGTACGGGCC |
23 |
AGCACATCTTCATCCTGCG |
19 |
216 |
Z106 |
9 |
GAGACCGACCGTCTGCTAAC |
20 |
TCCAGAGAACACCCTGCTG |
19 |
187 |
Z130 |
23 |
ACACGCTGGAGAGCCAAC |
18 |
CCAGAACCCACCTGGGAC |
18 |
104 |
Z140 |
8 |
ATTTGGCAGATTCCTTCATCA |
21 |
GGAACACCTGTGCCCGAG |
18 |
213 |
Z160 |
19 |
CGCTACCTGAAGGACACCAT |
20 |
CTGCTATTGCTATACTTGTGGGG |
23 |
240 |
Z164 |
1 |
TTGCTGTGTGTGTTTCTCAGTG |
22 |
TGTTCCATCGCTGAGAAGTG |
20 |
221 |
Z170 |
8 |
CTGAAAGTCTTCACATCTGTGACA |
24 |
GAATAAAGGTGGGGGGTGTT |
20 |
121 |
Z176 |
23 |
CTCCAGAACAGGTTAGACACACC |
23 |
CTGAACACCTCGAACCTTTACC |
22 |
219 |
Z177 |
7 |
GGAAACTCTCACGCTCGTTC |
20 |
ACGGATGTTCCTGTAAACGC |
20 |
143 |
Z178 |
22 |
ACCACAAGCGTGTGAGTCTG |
20 |
TTGACTGTGGCCTGCTGTAG |
20 |
108 |
Z191 |
7 |
AATATAGCGAAGGGACGATCC |
21 |
GAGGACTTCAGCAGAAACCG |
20 |
123 |
Z230 |
22 |
GGTTCTCCCACCAGCACTAA |
20 |
CGACTCAGACTTACTGGTGTGC |
22 |
141 |
Z233 |
25 |
CAGTTTTCGGGACCTCTGAG |
20 |
TGGATGAAGTTTACGGAGCC |
20 |
148 |
Z241 |
24 |
CAATTAAAGGTGCAGTGGAGC |
21 |
TTGGCCTCTGCTGTTTCTCT |
20 |
231 |
Z247 |
12 |
GATTTACCTGTTTCACAGCATCC |
23 |
CATCCTGAGATGTCATCTGATAGA |
24 |
242 |
Z249 |
24 |
TCTTCCCCTACAGGCACAGT |
20 |
ATGATACGCAGTCAACGTATCG |
22 |
147 |
Z265 |
6 |
CCTTCCCTCAAAGAGCGAG |
19 |
TGGAGTCGCTCATTAGCAAA |
20 |
113 |
Z266 |
17 |
TCCGGCTGACATGAGGAAT |
19 |
ACGCTCTGCTTCATGGTCTT |
20 |
212 |
Z342 |
23 |
CATTGAGTTTAGACCCCCACA |
21 |
TCACTTCTGCTTTATAAGGCACC |
23 |
163 |
Z355 |
10 |
CAGCCTGAGCACACAGAGAC |
20 |
GCACAGGCCTAATAAGACGC |
30 |
204 |
Z374 |
20 |
TTTTAATCCAGCAGCAGATCTG |
22 |
CCCAGGTTCACAAACCCTC |
19 |
166 |
Z379 |
5 |
AGCCTTTCACTGGCCCTATT |
20 |
CAAGGTGGAGTAAAAATCCTGC |
22 |
222 |
Z381 |
17 |
AAACGTTGTGATGTGATATTCCC |
23 |
TCTCCAGAAGCCTCGTGTG |
19 |
205 |
Z382A B |
7 7 |
GTGTCCGTTTTTTCGGTGTT |
20 |
TAGCACGCTAACGGCTAACA |
20 |
104 |
Z419 |
3 |
ATTATCCAGCACATGACGAGG |
21 |
TCTCGCTCCTCACCATCAC |
19 |
120 |
Z450 |
1 |
AAGTACAGCATTGTCCACAGTCA |
23 |
CAGGGAAACTGCTGATGTTG |
20 |
154 |
Z464 |
25 |
ACCTCCACACGGAAAGGAG |
19 |
GGTGATGAAAAATTAGCCTTCG |
22 |
156 |
Z470 |
15 |
GAGAGCCGAGGTGTGTATGC |
20 |
CACTGCCTATTACACCACTGATG |
23 |
139 |
Z531 |
10 |
GCAGGTTGCTCTGGTTTCTC |
20 |
TTTCCGATGACAGATCGTGA |
20 |
118 |
Z536 |
20 |
ATCCAGAGTGTGTCCCAGTTG |
21 |
AGGTGTGTCCCACTGACTCC |
20 |
118 |
Z540 |
21 |
GTGGCCGTCAGTTCAGCT |
18 |
CCTCCTGTCAGGTGAAGCTC |
20 |
127 |
Z553 |
19 |
GGCGTAATCCTCATTCCTGA |
20 |
CAAACTGTGTTGTGTGTTTTTCTG |
24 |
209 |
Z559 |
9 |
ACCCGGCTGTAGTGAAACC |
19 |
CCTCTCTGCCCTCCTCTTG |
19 |
114 |
Z562 |
9 |
TGTACTTCTCTCTCAATACACCGG |
24 |
AGGCCTCTGATTAACTGAATTACA |
24 |
207 |
Z618 |
14 |
CCTTTCACACTATACAGCGTATCA |
24 |
TCTTCTGGGGTTTACTGCTCA |
21 |
165 |
Z643 |
23 |
AGGCTGGGCTATAATGCTGA |
20 |
TAACGAGTCTGTGTTTCGCG |
20 |
241 |
Z644 |
2 |
CACGGACAATCCAGTGTACG |
20 |
GCAACAGTATAAGACTGTCTTGGG |
24 |
144 |
Z647 |
5 |
GTGAGAGGTACGGCAGGAGA |
20 |
AAACAACCCTGCATCCACTC |
20 |
249 |
Z652 |
17 |
AGAGAGTGAGCTCTGGAACCC |
21 |
CACTCTTGAAGATGGCAGAGG |
21 |
132 |
Z669 |
22 |
GTGTGTGATGTTGTGTTTGTCG |
22 |
GGGGTCACTTCTGTTTACAAGC |
22 |
137 |
Z684 |
22 |
GCTACAGCTCGCCTGTGTG |
19 |
ATCCGATACAGCCCGAGTC |
19 |
89 |
Z685 |
11 |
GGTGCTCGCAGGTGTTAATT |
20 |
CCAGGGCGTGATGTACTTTT |
20 |
204 |
Z697 |
14 |
AAAGTGTTACCGGGCAACAG |
20 |
GGGTTAGCATGTGGGCTG |
18 |
114 |
Z699 |
16 |
CTTGTGAACGTAGCCGTTGA |
20 |
TAAAACCACACACGAGCAGC |
20 |
209 |
Z720 |
23 |
ACTCTCAACATGAAGTGCTTTCC |
23 |
ACAGGGAATGAGCTGAGAACA |
21 |
145 |
Z722 |
21 |
AACTGAATGACTATGGGCGC |
20 |
TCTTCTTGGTAACCAGACAAAGC |
23 |
101 |
Z728 |
1 |
GTGGTCATGTGACACAGGATG |
21 |
GCTCTTACAGTCCTGAGAACAGC |
23 |
204 |
Z732 |
15 |
GTGCCTTCCGTTACCTTCAC |
20 |
TTTTAAGGAAAAAAAGTGAATGCA |
24 |
133 |
Z737 |
18 |
AACACTTGATATTGCATGACGG |
22 |
ATGTTGGTTAGCATGCACCA |
20 |
126 |
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