Linkage Group 01 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z164 |
1 |
TTGCTGTGTGTGTTTCTCAGTG |
22 |
TGTTCCATCGCTGAGAAGTG |
20 |
NA |
NA |
NA |
NA |
|
|
Z450 |
1 |
AAGTACAGCATTGTCCACAGTCA |
23 |
CAGGGAAACTGCTGATGTTG |
20 |
148 |
|
132 |
170 |
|
|
Z728 |
1 |
GTGGTCATGTGACACAGGATG |
21 |
GCTCTTACAGTCCTGAGAACAGC |
23 |
204 |
|
202 |
|
|
|
Z1142 |
1 |
CTTCACAGATTATATCCTACAA |
22 |
GTTTAGCGGCTTTTGCATCTG |
21 |
NA |
NA |
NA |
NA |
|
|
Z1154 |
1 |
TCATGATTGTTTGGAATGTAATAGTG |
26 |
TTGAGCGGTAGTCTTCTACGC |
21 |
130 |
|
138 |
202 |
|
|
Z1173 |
1 |
CAACAGTGATCACACCGACC |
20 |
CTGCCCTTCTCTGAATCAGG |
20 |
105 |
|
107 |
115 |
|
|
Z1351 |
1 |
GGTTAGTGATCAGTTAAGCAATTAGTG |
27 |
CTTTCTGAAACAGGGCCAAG |
20 |
138 |
164 |
222 |
|
|
|
Z1368 |
1 |
TTCTGCATGTGCGAGCAT |
18 |
AGCTGCATCTTGTGTCTAGCTG |
22 |
99 |
103 |
97 |
|
|
|
Z1463 |
1 |
GTGAGGTCATCCAAATAAATCTCC |
24 |
GCATTCAACCCCTGCATC |
18 |
NA |
NA |
NA |
NA |
|
|
Z1705 |
1 |
CCACAGCGGACACTTTGAACC |
21 |
CAAGGTTTACCACGGGACTGA |
21 |
NA |
NA |
NA |
NA |
|
|
Z1781 |
1 |
GCTCTGGCAGATTCCAAATTCC |
22 |
AAGGGTCAGCTGCAGGGGT |
19 |
NA |
NA |
NA |
NA |
|
|
Z1986 |
1 |
GCTGCAGCGCTGGTCACCAT |
20 |
GCTGTGGCGACCCTGGATTA |
20 |
NA |
NA |
NA |
NA |
|
|
Z3099 |
1 |
TTCTCCCGGAGTTTACATGCTG |
22 |
TTTGGTTCCTGTCAGATGCCA |
21 |
NA |
NA |
NA |
NA |
|
|
Z3417 |
1 |
TGAAAATAGGGTGCGTCTCCTT |
22 |
GCGCACATCCATTTCTCGTG |
20 |
134 |
|
116 |
132 |
|
|
Z3705 |
1 |
TTGTGATTTTTGGGCTTAGGGG |
22 |
TGTGCACCGTACTGTTTTTGGA |
22 |
NA |
NA |
NA |
NA |
|
|
Z3766 |
1 |
ACGCCTGCATCTGATGGTCA |
20 |
TCCATGCACAAAATCTCTTGCA |
22 |
168 |
|
174 |
|
|
|
Z3837 |
1 |
TGACTGCTGGAGCACAGATGC |
21 |
GCATTTCTGAACAGCCCTCC |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z3953 |
1 |
ATGCACATTACAACCTCGAGG |
21 |
ATGTGTTCGCTATTTCCATGC |
21 |
NA |
NA |
NA |
NA |
|
|
Z4593 |
1 |
GCGGTCAGTTGTTGATCAGTGC |
22 |
CGTGCATGAAGCGGAAGATG |
20 |
NA |
NA |
NA |
NA |
|
G41527 |
Z4764 |
1 |
CCCCTAACTGTTGACCGGTA |
20 |
AAGAGTGAGTCTGGGTCTCCTG |
22 |
NA |
NA |
NA |
NA |
|
G40375 |
Z5024 |
1 |
TGCCGTTCAGGGACTTCAAA |
20 |
ATCTGGTGGCTGCCAAATAACA |
22 |
150 |
|
244 |
|
|
G40379 |
Z5058 |
1 |
CTGACGAGAACGGTGAACATGC |
22 |
GCTCAGGGTTTGGAGGATGTG |
21 |
18 |
|
177 |
195 |
|
G40380 |
Z5370 |
1 |
GCCATCCAGAGCCAGAGATACA |
22 |
ATACTGACCAGCGGGAAACTCC |
22 |
NA |
NA |
NA |
NA |
|
G40386 |
Z5500 |
1 |
TTTTGTGGATGTCCTCGGCC |
20 |
ACTCGCCTGCATGAAGCAGA |
20 |
NA |
NA |
NA |
NA |
Use at your//own risk |
|
Z5508 |
1 |
TAGCGTGCCATGCGTTTTTG |
20 |
GATGTTCCTGCCTTATCGGCC |
21 |
NA |
NA |
NA |
NA |
|
G41585 |
Z6177 |
1 |
ATCACTGCAGGAGGCACAG |
19 |
TATGGCCCACGATAATCAAT |
20 |
163 |
|
157 |
|
|
G41799 |
Z6223 |
1 |
TCAGGTGACTGACAGCAAAG |
20 |
TGGTGAACATGGTCCCATC |
19 |
207 |
|
219 |
231 |
|
G41107 |
Z6283 |
1 |
TCAACACGCTTTATAGGGGG |
20 |
TTGTGACGCCTCTGACTGTC |
20 |
NA |
NA |
NA |
NA |
|
G39563 |
Z6368 |
1 |
TGTCCTATAGCCTCGCACG |
19 |
CCGTGATCAATCATCTGCAC |
20 |
188 |
|
154 |
|
|
G40427 |
Z6384 |
1 |
GTGCTTCCTCCTCAGTGTTTG |
21 |
CGGTCGCTGATCTGATGTTA |
20 |
152 |
|
124 |
140 |
|
G40429 |
Z6403 |
1 |
TGCTCAAGGACTGATTTTATGG |
22 |
TGGTTGATACAGGTGGCAGA |
20 |
236 |
|
230 |
284 |
|
G41116 |
Z6411 |
1 |
TGAGAACACATTGCTACGACG |
21 |
ACCCCCAGAGGCATAACAG |
19 |
274 |
|
258 |
290 |
|
G40432 |
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Legend
