Linkage Group 02 SSR Markers
We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
Marker |
Linkage |
Forward Primer Sequence |
Length |
Reverse Primer Sequence |
Length |
AB_1 |
AB_2 |
In_1 |
In_2 |
Comments |
dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z3077A |
2 |
TTAGCATAAGCAGCAGCCCTG |
21 |
AGCGTACAGCCGGGGTTAGA |
20 |
NA |
NA |
NA |
NA |
|
|
Z23 |
2 |
TGTAGATTAATGCTTTTCTGTGCA |
24 |
GCATATGAAGCAGGTCTGCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z46 |
2 |
GCTGTGTGTGCCTCATCTGT |
20 |
GCAGACGCTGTACTCCATCA |
20 |
NA |
NA |
NA |
NA |
|
|
Z644 |
2 |
CACGGACAATCCAGTGTACG |
20 |
GCAACAGTATAAGACTGTCTTGGG |
24 |
144 |
|
140 |
146 |
|
|
Z851 |
2 |
ACAGTCTTTACTCCGCAATAATCC |
24 |
ACTGAAGAGGAGGACCAGAGC |
21 |
NA |
NA |
NA |
NA |
|
|
Z1159 |
2 |
CGCTAATGACTAGCGTGACG |
20 |
ATAACCACAGTGATAAACGCA |
21 |
140 |
|
130 |
186 |
|
|
Z1241 |
2 |
TGTTCCCAGCAGTGTATAAAACC |
23 |
TACGTGACGCAGGAAAAGC |
19 |
NA |
NA |
NA |
NA |
|
|
Z1406 |
2 |
CGCCCGTTGAGGATACAG |
18 |
CACAGTTCACAAAGCGCACT |
20 |
NA |
NA |
NA |
NA |
|
|
Z1484 |
2 |
TAGGCGGAGGAGACCTGCAC |
20 |
CACCCTGATCAGTGAGTGCCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z1703 |
2 |
GCTAGCCAATGTAGTCGAAGGC |
22 |
TTTCCAAGGGGTCAGTGAGC |
20 |
166 |
170 |
160 |
NA |
|
|
Z3430 |
2 |
AGAAACGCAAACGCCCACAT |
20 |
TTTAAATGCAGCCCACGGCT |
20 |
127 |
|
115 |
|
|
|
Z3551 |
2 |
TGTGGAAGGAGCTGTAGATGGA |
22 |
TGGGTGGAGTTTATTCAAGCCT |
22 |
254 |
|
n |
|
Use at your |
|
Z3743 |
2 |
CATTGCACATGCAGCACATAAA |
22 |
CTCATGGGGACTGAAAAATGCA |
22 |
199 |
|
207 |
|
|
|
Z3754 |
2 |
TGTTTTCTTGAGCCCTGCTGG |
21 |
CTCTCGAAAGAGCAGGTCGAGG |
22 |
NA |
NA |
NA |
NA |
|
|
Z4278 |
2 |
ATCCTGTCCACTGCTGCATCA |
21 |
ACATTGCTAATGAGTGGCGCC |
21 |
NA |
NA |
NA |
NA |
|
|
Z4289 |
2 |
TCATTCAGTGACTCCGTCTCGC |
22 |
ATGCAGCCCTCAGACGTTCC |
20 |
238 |
|
246 |
|
|
|
Z4300 |
2 |
TTTGGTGCACAAATGAAGGCC |
21 |
CAAAAAGGGCATCGGTGCAT |
20 |
145 |
177 |
155 |
|
|
|
Z4349 |
2 |
GGGTAATGAAGCGTTTCTGTGG |
22 |
CTCCGGAGATCAGCTTTGAGG |
21 |
149 |
|
153 |
159 |
|
|
Z4382 |
2 |
TCGCTGGAACCACCATGTTG |
20 |
ATCTGAACCGTCTGACCGCC |
20 |
NA |
NA |
NA |
NA |
|
|
Z4469 |
2 |
TGAAGCACATTTCAGACCTGCC |
22 |
TTACCAAAGCGCTAGCATGAAA |
22 |
174 |
|
148 |
|
|
|
Z4585 |
2 |
TTGTCAAGTGTGGTTTCACCCA |
22 |
TAGCTACCCGCTGCATTGGG |
20 |
162 |
|
156 |
174 |
|
|
Z4586 |
2 |
GGTCCTCCAGGAACATGGTTG |
21 |
TCTGCTGCAGGTCAAACAGAGC |
22 |
NA |
NA |
NA |
NA |
|
|
Z4641 |
2 |
AGCGACTCTGATGAGCCAATCC |
22 |
ACCTCCTGCACCTCCACGTC |
20 |
248 |
|
n |
|
Use at your |
|
Z4662 |
2 |
TCCTTTTCAAGGCAGTTGAGGC |
22 |
AAGGCAGGAGGTGAGGACAGC |
21 |
248 |
|
254 |
|
|
|
Z4733 |
2 |
CATTCCACTGTGGCTTGTGACC |
22 |
AATTGCCAGATGGCCAGTCC |
20 |
137 |
|
141 |
|
|
|
Z4875 |
2 |
CACTGGGGTAAGGTGACTGCG |
21 |
TAGATATTCCCCCAAACCGCG |
21 |
NA |
NA |
NA |
NA |
|
|
Z5481 |
2 |
TTCTGAGCCGTAGAACCGCA |
20 |
CACTCACACTTTCTTTTGCGCG |
22 |
NA |
NA |
NA |
NA |
Use at your |
|
Z5611 |
2 |
CGACACAACGGTGAGCTTGA |
20 |
ATCATCCCTCATGAGCCCCA |
20 |
NA |
NA |
NA |
NA |
Use at your |
|
Z6090 |
2 |
ATTTAGTCAGAGAGCCCGAGC |
21 |
AAATTCTGAAGGCCTAAAAGGG |
22 |
244 |
|
208 |
222 |
|
|
Z6122 |
2 |
TGTTGATCATCAGAGGCTGC |
20 |
TAGGCCCAAATGAGTGCTG |
19 |
99 |
|
121 |
127 |
|
|
Z6123 |
2 |
AGACGAGCATCAGTGTGACG |
20 |
CCTGACTGTGCGCTAAATCA |
20 |
107 |
|
95 |
99 |
|
|
Z6452 |
2 |
CCTTTGAATCGTCCTAACTCAC |
22 |
CACAAATGCCGTTTGCAG |
18 |
83 |
|
83 |
99 |
|
|
Z6569 |
2 |
CTGCTAAAATGGGTTTGAAAGC |
22 |
ACAGACAGTTTCTGGCCCC |
19 |
203 |
231 |
193 |
195 |
|
|
Z6617 |
2 |
ACCGATGGGAACAATAAAAGA |
21 |
ATCGATGTATTGTGCAGTGTCC |
22 |
146 |
|
136 |
|
|
|
Z6766 |
2 |
CTTTCCCTCCAGACTTGCTG |
20 |
AGCACTGATTGTGCACAGATG |
21 |
271 |
|
167 |
249 |
|
|
Z6818 |
2 |
CTGATGGGAGAGATTGACAGC |
21 |
GAGGTGTGGAGGAAACTAAACG |
22 |
157 |
239 |
201 |
275 |
|
|
Z6863 |
2 |
AGGTCTGATTCCTCATTTCCTG |
22 |
CCTGGGTTGGAGTGATGATT |
20 |
? |
|
? |
|
|
|
Z6985 |
2 |
CAGCATGGTTTGGGTAACCT |
20 |
TGCATGCCAAACACAATTTT |
20 |
? |
|
? |
|
|
|
Z7019 |
2 |
ACAAAATGACCTCCCCAACA |
20 |
GCCTGATGGGAAACACACTT |
20 |
? |
|
? |
|
|
|
Z7227 |
2 |
AGTGGACAGCAGCGATTCTT |
20 |
TGGTTTGATAGGCAACATGTG |
21 |
206 |
|
184 |
|
|
|
Z7358 |
2 |
ACGTTAACACCGATAACGGC |
20 |
CGAATGATGCATTTCATTCC |
20 |
260 |
|
248 |
256 |
|
|
Z7361 |
2 |
TTCCTTCTTCCTGTTGCGTT |
20 |
TCTTGAAGGTTTGATTGGCC |
20 |
135 |
155 |
151 |
|
|
|
Z7632 |
2 |
CTCTCTTAATGGAAGAGCAGCC |
22 |
CAAGCCAGTCTGATGGAACA |
20 |
218 |
310 |
208 |
238 |
|
|
Z7634 |
2 |
ATTGAGGAAGTGGGTGCAAC |
20 |
TCACTTTCCCACCCTTCTTG |
20 |
197 |
|
169 |
257 |
|
|
Z7678 |
2 |
CAGACTGACAGATACACGCACA |
22 |
CGAGTGCTGCGTAGACTTACA |
21 |
274 |
|
172 |
|
|
|
Z7841 |
2 |
GCGTTGCTGAAAATGATTGA |
20 |
CACAACAACTCATCCTGCAAA |
21 |
150 |
|
154 |
160 |
|
|
Z8110 |
2 |
TGATGAAGGAGGAATGGCAC |
20 |
ACTCAGAGGAAACAGGCGAA |
20 |
136 |
|
132 |
|
|
|
Z8407 |
2 |
CATCCTGCAGTCTGAACATCA |
21 |
AGACCAAACCCACTGGTGAG |
20 |
134 |
|
194 |
204 |
|
|
Z8448 |
2 |
ATGTGGGTAAGACTGGCAGG |
20 |
AACCCATGCATCTGAAGAGG |
20 |
153 |
167 |
175 |
|
|
|
Z8451 |
2 |
TTGCAACTTAGCGGACTGAA |
20 |
GGCACGTGTCCATTGTGTAG |
20 |
184 |
194 |
240 |
290 |
|
|
Z8517 |
2 |
CACAAAAAGGAACGGTGTCA |
20 |
TGGCATAAACTTTGAGATGGC |
21 |
226 |
250 |
202 |
262 |
|
|
Z9037 |
2 |
AGAGAGAGTTCTGGAGGACCG |
21 |
TCGGTGTGGTCAAGAGAGC |
19 |
145 |
|
137 |
155 |
|
|
Z9234 |
2 |
AGGACGCAGGAAGCGTTG |
18 |
TTTGCAGACTGAGAGGTGACC |
21 |
310 |
|
284 |
336 |
|
|
Z9354 |
2 |
ATTGGTTTGCCCTTGAACAG |
20 |
TGCCTCATCAGCTGTAAGCT |
20 |
235 |
|
229 |
|
|
|
Z9361 |
2 |
GCTGAGCACTTTCAACACCA |
20 |
TGCTGGACAAGATTCTTTGG |
20 |
217 |
249 |
187 |
201 |
|
|
Z9615 |
2 |
GACGGAGCTTGTAGTGGAGC |
20 |
TTTGGAGTTGGCGAGTCTCT |
20 |
305 |
|
299 |
|
|
|
Z9944 |
2 |
TGGATCACTTGCGATAACCA |
20 |
AATCCCTATACGGCACCTCA |
20 |
221 |
|
237 |
245 |
|
|
Z10021 |
2 |
TCACAGCATCAGGACTCTGG |
20 |
GGATTCCATCAGGACCAATG |
20 |
259 |
|
227 |
? |
|
|
Z10050 |
2 |
CATTGATCGCGTTTGATTTG |
20 |
CCGAGCAGAAATGAGCATCT |
20 |
? |
|
? |
|
|
|
Z10302 |
2 |
AGTGGACCAAATTGCAGACC |
20 |
GGGTCCATTCAGGTGTCTGT |
20 |
112 |
|
124 |
? |
|
|
Z10764 |
2 |
TCCTTTTCTCGCTCTCTCGA |
20 |
GGTCACGAAAAGGAAACCAA |
20 |
187 |
|
177 |
211 |
|
|
Z10838 |
2 |
TGGGCATTTGGATGTAACAA |
20 |
CCCCTAAATTGGCACTTATGA |
21 |
216 |
|
206 |
220 |
|
|
Z11023 |
2 |
CAGTGCTGCTTCGTGGTAAA |
20 |
TGCAGTGCTGTAATTGAGGG |
20 |
NA |
NA |
NA |
NA |
|
|
Z11066 |
2 |
TGGGTCAGTGTTACTGCAGC |
20 |
GAGAGGGTGCAGTTTTGCTC |
20 |
102 |
|
108 |
116 |
|
|
Z11132 |
2 |
TAGCTAGACGGACGGAAACG |
20 |
CCTCAGCAAGTCAATGCAAA |
20 |
234 |
|
238 |
|
|
|
Z11354 |
2 |
GATAAAGGACAGGCCAACGA |
20 |
AAAACACCCTTCACCACAGC |
20 |
? |
|
? |
? |
|
|
Z11410 |
2 |
TGCAGATTTCTCTGACATTCTCA |
23 |
AGAGAGCATCATTCAGCGGT |
20 |
88 |
|
84 |
92 |
|
|
Z11415 |
2 |
GCTCTATGAGGCGTCCTTTG |
20 |
CTCCAGTCTTTTCAGCAGGG |
20 |
133 |
|
169 |
|
|
|
Z11863 |
2 |
TGATACCTGTCAGCGAGTGG |
20 |
CTGAGCAAAACACTGTCCACA |
21 |
239 |
|
153 |
|
|
|
Z13281 |
2 |
TCAATATTGCACTGACCCACA |
21 |
CATGCTCAAACACGCTCACT |
20 |
149 |
203 |
99 |
159 |
|
|
Z13361 |
2 |
ACTCGGTCCTGATGGATGAC |
20 |
CAGTAAATAATAACACAAGCATGCG |
25 |
187 |
|
127 |
|
|
|
Z13475 |
2 |
CTCTTCTCCCAGTGTGGAGC |
20 |
CCAGCCTGCAGATCTTTTTA |
20 |
184 |
|
184 |
204 |
|
|
Z13521 |
2 |
CATTGTCACACACATTCCTGG |
21 |
CGTCACAGCTCAAGCTGAAG |
20 |
281 |
|
183 |
|
|
|
Z13579 |
2 |
CAGCAGAAGGGAGTCAAAGG |
20 |
GGCGATTTTAAAAGGCACTG |
20 |
187 |
|
261 |
|
|
|
Z13620 |
2 |
GCGTCCCTGCTTACACTTTC |
20 |
AAGATGCCGGAGCATTGTAG |
20 |
251 |
|
223 |
225 |
|
|
Z13708 |
2 |
TCTCCCCTCAACAGAGCACT |
20 |
CGTTCAGCAAATCCAGGTTT |
20 |
278 |
|
240 |
|
|
|
Z15410 |
2 |
ACGCTCCTAAAACAGGCAGA |
20 |
CAGACTGAGCTCCATTTCTGC |
21 |
134 |
|
146 |
|
|
|
Z17291 |
2 |
TAGGAGTCAGTATATGCACCCG |
22 |
AAGCTGGCACCAAACAGTG |
19 |
257 |
|
245 |
289 |
|
|
Z20550 |
2 |
CGGTGTCACTGGGAGTTTTT |
20 |
GCGTAAACACAGTCAGCGAG |
20 |
279 |
|
297 |
319 |
|
|
Z20629 |
2 |
TGGAGGGAATGGAGAATACG |
20 |
TTTGAGCTTGGAGGACAGCT |
20 |
97 |
|
85 |
87 |
|
|
Z20656 |
2 |
TGCTCTCGGCAACACTATTG |
20 |
TGCTGAGAAGAACAGCCAGA |
20 |
258 |
|
256 |
|
|
|
Z21046 |
2 |
CTGAAGTCCATGCACTTTATCAG |
23 |
CCTTTTGGGGGAATGAAAAT |
20 |
165 |
|
163 |
|
|
|
Z21363 |
2 |
TGCATAAACAAACTCGCAGG |
20 |
CCCTGGGCATGGTAATTAGA |
20 |
238 |
|
232 |
234 |
|
|
Z21490 |
2 |
CCAGCCTACAAACACACCCT |
20 |
TATTTCTTAGTGCCCGTGCC |
20 |
222 |
|
158 |
232 |
|
|
Z21831 |
2 |
GCCTTTCTTCATGCAGAACC |
20 |
TGGGACGGATATCCTACAGG |
20 |
226 |
|
228 |
230 |
|
|
Z22147 |
2 |
GCTGATTGGCCAATTTGTTT |
20 |
CAAGCCACAAGAGTCAGTGC |
20 |
224 |
|
226 |
|
|
|
Z22527 |
2 |
GGTGTAGTTTGTGCCAGCCT |
20 |
TGCTAAAGCTGTCTACGCGA |
20 |
115 |
|
123 |
|
|
|
Z22544 |
2 |
TCATGTCCACCGTTCAGTGT |
20 |
AATATCAGGTCATGCGCTCG |
20 |
NA |
NA |
NA |
NA |
|
|
Z22747 |
2 |
GAAAGCATCAGCCTCTCCAC |
20 |
GGCAGTGAGAGGGTTCATGT |
20 |
NA |
NA |
NA |
NA |
|
Legend
Table generated Wed Oct 7 16:28:07 1998
