Linkage Group 04 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z984 | 4 | TTTCTCAGAGCACAACCTTTAAC | 23 | GAGAGCAAACTCCAGCTGCT | 20 | NA | NA | NA | NA |
| |
Z1366 | 4 | TACTTCAGCTTCATCCAGACCA | 33 | CTGAACTCTGAGTCCAGACCG | 21 | 119 | 121 | 103 | 111 |
|
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Z1389 | 4 | TTTGACAAGTGAGTGTCCGC | 30 | TAGGACCAGCTTCTGCCTGT | 20 | NA | NA | NA | NA |
| |
Z1416 | 4 | GGACACATGTTGAAACTCTACAGG | 24 | ACCTGCCCTACCCACTCC | 18 | 130 |
| 126 |
|
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Z1505 | 4 | GAGTGCTAATCTCCGACTCGGT | 22 | CTCATTAGAATAAACTCTCTGAAC | 24 | 121 |
| 103 | 115 |
| |
Z1525 | 4 | CTTCAGCGCATGTGATCG | 18 | GACCTTCTCGCTGGACTGAC | 20 | 106 |
| 126 | 162 |
| |
Z3025 | 4 | CCCAGACCTTCTGATCCAGGC | 21 | CGCACTTTCATCTACAGCTCGA | 22 | NA | NA | NA | NA | Use at your |
|
Z3219 | 4 | AGCGGCTGTAGATGTCGATGC | 21 | CCGTGTGTGTGCACATGACC | 20 | NA | NA | NA | NA |
|
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Z3275 | 4 | TTATTAACACAGACAGCCGGG | 21 | CAGACAGATGCAGACCCTCA | 20 | NA | NA | NA | NA |
| |
Z3602 | 4 | AGCATTAGTGCATTCTGCGCA | 21 | TTCCGATCCCAAAATTACAGCA | 22 | 105 | 107 | 87 | 129 |
| |
Z4025 | 4 | TGTGTGCTCACTGCTGCTGG | 20 | CTCAGAGCGCTGGTCAACCA | 20 | NA | NA | NA | NA |
|
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Z4951 | 4 | TTCCTTCATGGTGGGCGAAT | 20 | CCTCTCGTTTGGAGCCCAGA | 20 | 257 |
| 245 | 273 |
| |
Z5095 | 4 | GTTGGGTTTAGGGGTAGGCTGG | 22 | GCGCCCCAAATGGTTTTGTA | 20 | NA | NA | NA | NA |
| |
Z5112 | 4 | CAGCGACGCTTCAGTGCTGT | 20 | CCGGGAGAGTGAGATGCTGG | 20 | NA | NA | NA | NA |
| |
Z5167 | 4 | GCCCTTGGAACAGTCACATTCA | 22 | TGCAAGCCATCACTGGGAAA | 20 | NA | NA | NA | NA | Use at your | |
Z6482 | 4 | GGATGCTTCCGTCACTCTTC | 20 | AGACCTGCACCTGTTCCAGT | 20 | NA | NA | NA | NA |
|
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Z6503 | 4 | TCTGAGTCAGGCCTACCCC | 19 | ATCTCCAGCCAAAATACATTCA | 22 | 320 |
| 300 |
|
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Z6580 | 4 | GGATTTCAGCGGCAGAATAA | 20 | GACTGCGCATTCTTCACTCA | 20 | 136 |
| 114 | 128 |
| |
Z6596 | 4 | GATGTCCACCTTTCCACCC | 19 | GGTCACAGGGTGGCAGTC | 18 | 170 | 178 | 164 | 184 | Use at your | |
Z6908 | 4 | TGAGGTTACATGTCTTTGCTGG | 22 | ACCCCAATGGCAATGATTAA | 20 | NA | NA | NA | NA |
| |
Z6977 | 4 | TGCTAATTGGGACACTGCAA | 20 | AGAGTGGCACACTGGTAAAACA | 22 | ? | ? | ? | ? |
| |
Z7104 | 4 | CCTCCCTTTAGAGCCACCTG | 20 | GCCCATCACAAACCAGAACT | 20 | 178 |
| 172 | 180 |
| |
Z7191 | 4 | TTTTTGTTTCATCTCTCTCCCT | 22 | AGGTTTCCAAGACGGGCTAT | 20 | 115 |
| 119 | 121 |
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Z7490 | 4 | TGGTGGATGTGTTCACGACT | 20 | TGTAAGTCCTTCAGAAGAGGCA | 22 | 215 | 249 | 231 | 245 |
| |
Z7496 | 4 | CGCTCATTAGCATGGACAAG | 20 | AGACGCAAGGAGGGAAATTT | 20 | ? |
| ? | ? |
| |
Z7524 | 4 | TCTGGCAGAGCAGACACATC | 20 | TTGCTGTGAGGTGATTGTAACA | 22 | 103 |
| 109 |
|
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Z7629 | 4 | CGAAACTAACACGAACACCG | 20 | CTTTAGCACAACACGACCGA | 20 | 225 | n | 215 | 223 |
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Z7918 | 4 | AGATGATTTGCCCTTTGTGG | 20 | GGCTGCATGCCATTTATTCT | 20 | 112 | 132 | 124 | 144 |
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Z7931 | 4 | CTCATCCTTGCTGTGGGATT | 20 | TTTCCACCCGCTACTGCC | 18 | 278 | 288 | 294 |
|
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Z8184 | 4 | ATCTGCCTGTCAAATTTCCG | 20 | GAAAATGAACGCGGTGAGAT | 20 | 238 |
| 234 | 240 |
| |
Z8226 | 4 | TCACTCACTTTCCCGCTTG | 19 | ACTCATGGTGTTTTCCTGGTG | 22 | 111 |
| 117 | n |
| |
Z9247 | 4 | TTGACAGCTTTCAGGTGCAG | 20 | TGCCCATGTTCATAGCTCTG | 20 | 118 |
| 110 |
|
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Z9319 | 4 | ATGAGGGAATGTGGCTGTTC | 20 | TCCGGACATGTTCTGATGAA | 20 | 156 |
| 158 | 162 |
| |
Z9324 | 4 | CAGCACAAAATCTGGCTTCA | 20 | CTCTCCACACATGTGCTCTCA | 21 | 176 |
| 174 | 178 |
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Z9496 | 4 | CGCTTGTGTTCCACAGTGAT | 20 | TTGTGTTCTTCTCGTGCTCG | 20 | 280 |
| 294 | 298 |
| |
Z9590 | 4 | TACATGAGCAGCGGCATTAC | 20 | GGCACTTACACACACACACTTTC | 23 | ? | ? | ? | ? |
| |
Z9667 | 4 | AGTCGAGCTGAACTTTGGGA | 20 | GATGCAAATAGCAATGGCCT | 20 | 263 |
| 249 |
|
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Z9750 | 4 | GCACCAATCCGGAAAGAATA | 20 | AGCTTTAGAGCTCACTGCGC | 20 | 205 | 225 | 225 | 309 |
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Z9920 | 4 | GCTGCTGAGTTGTGGTCTTG | 20 | TGCCCTTAAATCATACAAAATTACA | 25 | 148 | 202 | 184 | 192 |
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Z10066 | 4 | CTTCCTGCTCCGCCTCCT | 18 | CTACCTGTCTGAACTCCGGC | 20 | 189 |
| 177 | 199 |
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Z10164 | 4 | ATTAAAACCCACACACGCAA | 20 | GTCCCGCTCATTGTTTGTTT | 20 | 298 | 204 | 168 | 216 |
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Z10280 | 4 | AATGTTCCGTACGGTTCTGC | 20 | CTTTTGCCCTTCTGGTTCC | 19 | 203 |
| 191 | 197 |
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Z10354 | 4 | AACACACCCTGGAGAACCAG | 20 | AGCACTTCCTGTCTGACCGT | 20 | 191 |
| 205 | 229 |
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Z10983 | 4 | TCAGACTCGCATACGTGAGG | 20 | TTGAGTGACAGCTGGGTCTG | 20 | 168 |
| 144 | 158 |
| |
Z11250 | 4 | TCTTTCCTCAGGCACACACA | 20 | GTGGAAGTGACTCTGACGCA | 20 | 150 |
| 144 |
|
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Z11538 | 4 | GGCTTGAAGAACACAATGCA | 20 | GGAGCTTTAGCTGGTAATCCC | 21 | 199 |
| 135 | 153 |
| |
Z11566 | 4 | TCTCCTTTTGCTCTGCCATT | 20 | TGCACTGGCAACATTCTCTC | 20 | 187 |
| 177 |
|
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Z11657 | 4 | GTGGCCTTTCATTTCAAACG | 20 | CTGGCGACAATAAAAGGCAT | 20 | 174 |
| 164 | 178 |
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Z11873 | 4 | GTTTTGGGGAAGCCTCAAAT | 20 | TAATCCTCCTCCCCCAGTTT | 20 | ? | ? | ? |
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Z11876 | 4 | CATCAAAGCCTCAGCACAGA | 20 | TGGAATAAGAGATTCCATGCC | 21 | 160 |
| 162 | 192 |
| |
Z13274 | 4 | TGGTTAGACCACTGTAGACCCC | 22 | AGCGACAACACACTCCTGC | 19 | 218 |
| 200 |
|
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Z13469 | 4 | GAAAATAAACGAGGGCGACA | 20 | CTGACCGCGCTGTCAGTAG | 19 | 168 | 178 | 164 | 166 |
| |
Z13546 | 4 | ACCGCTCTTTGGTCTGAGAA | 20 | AATGAACTCTTTCAGACGCG | 20 | NA | NA | NA | NA |
| |
Z13639 | 4 | TGTTTCCCTGTGTCAGTCCA | 20 | CCTGAAATGTTCCCGAGTGT | 20 | 112 |
| 104 | 110 |
| |
Z13652 | 4 | CCTCCCGATCATTTCACAGT | 20 | GATGGAGAGGACACCCTGAA | 20 | 287 |
| 283 | 293 |
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Z17278 | 4 | TGAGCAACAGGATGTTAAATGA | 22 | TCGGTATTTTAGTGGCCTGG | 20 | 166 | 188 | 178 |
|
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Z20450 | 4 | CCAAATCTACGCCCATGTCT | 20 | CGACCTCTGAATCTGCCTTT | 20 | 275 | 297 | 261 | 319 |
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Z20533 | 4 | TGACCCAAATGAAGCATGAA | 20 | CAGCTCTGTCAGCTGACTCG | 20 | 209 | 227 | 203 | 239 |
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Z21319 | 4 | GGGCTCTGAAGCTTTAGGCT | 20 | TGAGGCAGATCAGTCTGGTG | 20 | 280 |
| 282 |
|
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Z21636 | 4 | CTCGCTCACATGAGGACTGA | 20 | AGTCTGATTGTGGCCGAGAG | 20 | 159 |
| 152 | 161 |
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Z21686 | 4 | GTGCACAGAAACTGCTGGAA | 20 | TGACTGAAAGTCTGCATGGG | 20 | 218 |
| 152 | 192 |
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Z21743 | 4 | GTTCGGTGGTCTGGACATCT | 20 | TTGATGCAGTTATTCTGCGG | 20 | 151 |
| 149 | 177 |
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Z22525 | 4 | TCTGTGGCCAATCTCCTCTT | 20 | TTATGCCAGGAAAAGAGGGA | 20 | 297 |
| 291 |
|
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Z23058 | 4 | TTCTATACAGTGTTGCCGCG | 20 | GGCTCAGGAACTATTTGGCA | 20 | NA | NA | NA | NA |
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Legend
Table generated Wed Oct 7 16:28:07 1998
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