Linkage Group 4

Linkage Group 04 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number	Linkage Group	Forward Primer Sequence	Length	Reverse Primer Sequence	Length	AB_1 Size	AB_2 Size	In_1 Size	In_2 Size	Comments	dbSTS Accession
Z984	4	TTTCTCAGAGCACAACCTTTAAC	23	GAGAGCAAACTCCAGCTGCT	20	NA	NA	NA	NA		G41850
Z1366	4	TACTTCAGCTTCATCCAGACCA	33	CTGAACTCTGAGTCCAGACCG	21	119	121	103	111
Z1389	4	TTTGACAAGTGAGTGTCCGC	30	TAGGACCAGCTTCTGCCTGT	20	NA	NA	NA	NA		G40085
Z1416	4	GGACACATGTTGAAACTCTACAGG	24	ACCTGCCCTACCCACTCC	18	130		126			G41368
Z1505	4	GAGTGCTAATCTCCGACTCGGT	22	CTCATTAGAATAAACTCTCTGAAC	24	121		103	115		G41385
Z1525	4	CTTCAGCGCATGTGATCG	18	GACCTTCTCGCTGGACTGAC	20	106		126	162		G41387
Z3025	4	CCCAGACCTTCTGATCCAGGC	21	CGCACTTTCATCTACAGCTCGA	22	NA	NA	NA	NA	Use at your own risk
Z3219	4	AGCGGCTGTAGATGTCGATGC	21	CCGTGTGTGTGCACATGACC	20	NA	NA	NA	NA
Z3275	4	TTATTAACACAGACAGCCGGG	21	CAGACAGATGCAGACCCTCA	20	NA	NA	NA	NA		G40333
Z3602	4	AGCATTAGTGCATTCTGCGCA	21	TTCCGATCCCAAAATTACAGCA	22	105	107	87	129		G40338
Z4025	4	TGTGTGCTCACTGCTGCTGG	20	CTCAGAGCGCTGGTCAACCA	20	NA	NA	NA	NA
Z4951	4	TTCCTTCATGGTGGGCGAAT	20	CCTCTCGTTTGGAGCCCAGA	20	257		245	273		G41546
Z5095	4	GTTGGGTTTAGGGGTAGGCTGG	22	GCGCCCCAAATGGTTTTGTA	20	NA	NA	NA	NA		G41555
Z5112	4	CAGCGACGCTTCAGTGCTGT	20	CCGGGAGAGTGAGATGCTGG	20	NA	NA	NA	NA		G40382
Z5167	4	GCCCTTGGAACAGTCACATTCA	22	TGCAAGCCATCACTGGGAAA	20	NA	NA	NA	NA	Use at your own risk	G41558
Z6482	4	GGATGCTTCCGTCACTCTTC	20	AGACCTGCACCTGTTCCAGT	20	NA	NA	NA	NA
Z6503	4	TCTGAGTCAGGCCTACCCC	19	ATCTCCAGCCAAAATACATTCA	22	320		300			G40443
Z6580	4	GGATTTCAGCGGCAGAATAA	20	GACTGCGCATTCTTCACTCA	20	136		114	128		G40453
Z6596	4	GATGTCCACCTTTCCACCC	19	GGTCACAGGGTGGCAGTC	18	170	178	164	184	Use at your own risk	G40455
Z6908	4	TGAGGTTACATGTCTTTGCTGG	22	ACCCCAATGGCAATGATTAA	20	NA	NA	NA	NA		G41623
Z6977	4	TGCTAATTGGGACACTGCAA	20	AGAGTGGCACACTGGTAAAACA	22	?	?	?	?		G41134
Z7104	4	CCTCCCTTTAGAGCCACCTG	20	GCCCATCACAAACCAGAACT	20	178		172	180		G40500
Z7191	4	TTTTTGTTTCATCTCTCTCCCT	22	AGGTTTCCAAGACGGGCTAT	20	115		119	121		G40515
Z7490	4	TGGTGGATGTGTTCACGACT	20	TGTAAGTCCTTCAGAAGAGGCA	22	215	249	231	245		G41664
Z7496	4	CGCTCATTAGCATGGACAAG	20	AGACGCAAGGAGGGAAATTT	20	?		?	?		G40562
Z7524	4	TCTGGCAGAGCAGACACATC	20	TTGCTGTGAGGTGATTGTAACA	22	103		109			G40566
Z7629	4	CGAAACTAACACGAACACCG	20	CTTTAGCACAACACGACCGA	20	225	n	215	223		G40582
Z7918	4	AGATGATTTGCCCTTTGTGG	20	GGCTGCATGCCATTTATTCT	20	112	132	124	144		G40609
Z7931	4	CTCATCCTTGCTGTGGGATT	20	TTTCCACCCGCTACTGCC	18	278	288	294			G41670
Z8184	4	ATCTGCCTGTCAAATTTCCG	20	GAAAATGAACGCGGTGAGAT	20	238		234	240		G40630
Z8226	4	TCACTCACTTTCCCGCTTG	19	ACTCATGGTGTTTTCCTGGTG	22	111		117	n		G41165
Z9247	4	TTGACAGCTTTCAGGTGCAG	20	TGCCCATGTTCATAGCTCTG	20	118		110			G40755
Z9319	4	ATGAGGGAATGTGGCTGTTC	20	TCCGGACATGTTCTGATGAA	20	156		158	162		G41177
Z9324	4	CAGCACAAAATCTGGCTTCA	20	CTCTCCACACATGTGCTCTCA	21	176		174	178		G40767
Z9496	4	CGCTTGTGTTCCACAGTGAT	20	TTGTGTTCTTCTCGTGCTCG	20	280		294	298		G40801
Z9590	4	TACATGAGCAGCGGCATTAC	20	GGCACTTACACACACACACTTTC	23	?	?	?	?		G40814
Z9667	4	AGTCGAGCTGAACTTTGGGA	20	GATGCAAATAGCAATGGCCT	20	263		249			G40821
Z9750	4	GCACCAATCCGGAAAGAATA	20	AGCTTTAGAGCTCACTGCGC	20	205	225	225	309		G40835
Z9920	4	GCTGCTGAGTTGTGGTCTTG	20	TGCCCTTAAATCATACAAAATTACA	25	148	202	184	192		G40863
Z10066	4	CTTCCTGCTCCGCCTCCT	18	CTACCTGTCTGAACTCCGGC	20	189		177	199		G39746
Z10164	4	ATTAAAACCCACACACGCAA	20	GTCCCGCTCATTGTTTGTTT	20	298	204	168	216		G39757
Z10280	4	AATGTTCCGTACGGTTCTGC	20	CTTTTGCCCTTCTGGTTCC	19	203		191	197		G39774
Z10354	4	AACACACCCTGGAGAACCAG	20	AGCACTTCCTGTCTGACCGT	20	191		205	229		G39784
Z10983	4	TCAGACTCGCATACGTGAGG	20	TTGAGTGACAGCTGGGTCTG	20	168		144	158		G39854
Z11250	4	TCTTTCCTCAGGCACACACA	20	GTGGAAGTGACTCTGACGCA	20	150		144			G39882
Z11538	4	GGCTTGAAGAACACAATGCA	20	GGAGCTTTAGCTGGTAATCCC	21	199		135	153		G39928
Z11566	4	TCTCCTTTTGCTCTGCCATT	20	TGCACTGGCAACATTCTCTC	20	187		177			G39931
Z11657	4	GTGGCCTTTCATTTCAAACG	20	CTGGCGACAATAAAAGGCAT	20	174		164	178		G39941
Z11873	4	GTTTTGGGGAAGCCTCAAAT	20	TAATCCTCCTCCCCCAGTTT	20	?	?	?			G39969
Z11876	4	CATCAAAGCCTCAGCACAGA	20	TGGAATAAGAGATTCCATGCC	21	160		162	192		G41754
Z13274	4	TGGTTAGACCACTGTAGACCCC	22	AGCGACAACACACTCCTGC	19	218		200			G41600
Z13469	4	GAAAATAAACGAGGGCGACA	20	CTGACCGCGCTGTCAGTAG	19	168	178	164	166		G40026
Z13546	4	ACCGCTCTTTGGTCTGAGAA	20	AATGAACTCTTTCAGACGCG	20	NA	NA	NA	NA		G39115
Z13639	4	TGTTTCCCTGTGTCAGTCCA	20	CCTGAAATGTTCCCGAGTGT	20	112		104	110		G40050
Z13652	4	CCTCCCGATCATTTCACAGT	20	GATGGAGAGGACACCCTGAA	20	287		283	293		G40053
Z17278	4	TGAGCAACAGGATGTTAAATGA	22	TCGGTATTTTAGTGGCCTGG	20	166	188	178			G40138
Z20450	4	CCAAATCTACGCCCATGTCT	20	CGACCTCTGAATCTGCCTTT	20	275	297	261	319		G40177
Z20533	4	TGACCCAAATGAAGCATGAA	20	CAGCTCTGTCAGCTGACTCG	20	209	227	203	239		G40180
Z21319	4	GGGCTCTGAAGCTTTAGGCT	20	TGAGGCAGATCAGTCTGGTG	20	280		282			G40239
Z21636	4	CTCGCTCACATGAGGACTGA	20	AGTCTGATTGTGGCCGAGAG	20	159		152	161		G40264
Z21686	4	GTGCACAGAAACTGCTGGAA	20	TGACTGAAAGTCTGCATGGG	20	218		152	192		G40267
Z21743	4	GTTCGGTGGTCTGGACATCT	20	TTGATGCAGTTATTCTGCGG	20	151		149	177		G41746
Z22525	4	TCTGTGGCCAATCTCCTCTT	20	TTATGCCAGGAAAAGAGGGA	20	297		291			G40327
Z23058	4	TTCTATACAGTGTTGCCGCG	20	GGCTCAGGAACTATTTGGCA	20	NA	NA	NA	NA		G39544

Legend

Table generated Wed Oct 7 16:28:07 1998