Linkage Group 19 SSR Markers
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We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.
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Marker | Linkage | Forward Primer Sequence | Length | Reverse Primer Sequence | Length | AB_1 | AB_2 | In_1 | In_2 | Comments | dbSTS |
|---|---|---|---|---|---|---|---|---|---|---|---|
Z1799B | 19 | AGCGCTCCTCCGTCTGCTGT | 20 | TCCGCGTCCATCACTGCGGG | 21 | NA | NA | NA | NA |
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Z7 | 19 | TCATGAGCAGCGTTTTTCC | 19 | AAAGCACCATCCCACAAAAC | 20 | 147 |
| 143 |
|
|
|
Z160 | 19 | CGCTACCTGAAGGACACCAT | 20 | CTGCTATTGCTATACTTGTGGGG | 23 | NA | NA | NA | NA |
|
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Z553 | 19 | GGCGTAATCCTCATTCCTGA | 20 | CAAACTGTGTTGTGTGTTTTTCTG | 24 | NA | NA | NA | NA |
| |
Z1234 | 19 | CATTTAGATTAGGCCTTCCGG | 21 | TATTACTGTTTACTTTCAGTGTGGCC | 26 | NA | NA | NA | NA |
| |
Z1247 | 19 | GGAGGAGCAGCTCTGCAG | 18 | GTTAACCACTGAGACACCACTCC | 23 | NA | NA | NA | NA |
| |
Z1271 | 19 | CCGACGAGACCAAGATCAAG | 20 | GTGACATCAAGTGTGTATCCGG | 22 | NA | NA | NA | NA |
| |
Z1422 | 19 | ACTCATGCATGAGGTCAGTCT | 21 | TCATTAAACAAAGATGTGATGCTAA | 25 | NA | NA | NA | NA | Use at your | |
Z1544 | 19 | ATCGGGAACTTCCTGAACG | 19 | GATCGAAGCCCTTAGCCTG | 19 | NA | NA | NA | NA |
| |
Z1625 | 19 | TGGGATACCTGACATCCAGACC | 22 | GCTTGAGTGAGGACGCGGTT | 20 | 211 |
| 167 |
|
| |
Z1628 | 19 | CAGTATCAGCACACGTGCATGC | 22 | CCGTATGAGGATGTCCACGC | 20 | 186 |
| 166 |
|
| |
Z1632 | 19 | GCGCATCCTCCTCCTCATCT | 20 | TCAGATCTCCTTCAGCCTGTCA | 22 | NA | NA | NA | NA |
| |
Z1651 | 19 | CAGGTACAGCAGTTCCCCATG | 21 | CACGTACAGCGTCAGCCTGT | 20 | NA | NA | NA | NA |
| |
Z1803 | 19 | CAGAACCCTGCTGTTCCAGAA | 21 | AGGTGCACCGTCTGGATCTT | 20 | 189 |
| 175 | 183 |
|
|
Z3023 | 19 | AGTTTCATTGTCCAATCACTGTAC | 24 | GGACTGCAAAAACTTTGAAGCTC | 23 | NA | NA | NA | NA |
|
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Z3086 | 19 | CGAAATCCCCTGAAATCTGCC | 21 | CACACTATGCAGCTCAGGGGC | 21 | NA | NA | NA | NA |
| |
Z3214 | 19 | CGTCATTGTGAGTCACTGCTGA | 22 | TTACACAGCCCAGCAGTCCG | 20 | NA | NA | NA | NA |
|
|
Z3384 | 19 | TATTAGAGGTCTGCATTTCCG | 21 | CTATTGCACAGACAGCATCACA | 22 | 137 | 169 | n |
| Use at your |
|
Z3606 | 19 | AGACAGTTTGTGTATGCGTGCG | 22 | AATCACTCCTCATTGGCTGCTG | 22 | 160 | 178 | n |
| Use at your | |
Z3770 | 19 | AAAGCCTGAGGGACGCACAG | 20 | TTCAGTGAGGGGTAACGGTGG | 21 | NA | NA | NA | NA |
|
|
Z3782 | 19 | AATTCTGGGGGGTAATTCTGGC | 22 | AAGGGGGCTAAACCTTCAACTG | 22 | 93 | 115 | 143 | 201 |
| |
Z3816 | 19 | AGATCAGGTGCACAGTGGCG | 20 | CCACTGAAGGGCAAGTGGCT | 20 | NA | NA | NA | NA |
|
|
Z4009 | 19 | TAATGGTTGCCCCGTCCATC | 20 | TCATGCTGCAAACCCCAGTC | 20 | 281 |
| 233 |
|
|
|
Z4374 | 19 | GCATCTTGACTGTGAAAGT | 19 | TTCTGTTGGCTATAATAAGG | 20 | NA | NA | NA | NA |
| |
Z4379 | 19 | TCACACGCCGATCCACATTT | 20 | TGAATGGTCCCGTTTGTCATT | 21 | NA | NA | NA | NA |
| |
Z4825 | 19 | AAGCTGCATCCCATCACTG | 19 | AGAACGGCTAAATTTGGTTGG | 21 | NA | NA | NA | NA |
|
|
Z5183 | 19 | ACAATCACTTTTGCTCTGGGCC | 22 | CCGCCATTGCAAACAGTCAC | 20 | 147 |
| 143 |
|
| |
Z5352 | 19 | TTGCCCTGCTATCAAGGGTTG | 21 | CGTGCATCCAGCAACCAATC | 20 | 149 |
| 147 | 151 |
| |
Z5583 | 19 | CGGAGCCACTCAGATCAGCA | 20 | ACCTCTGAGAACGCAGGTTTGG | 22 | NA | NA | NA | NA | Use at your | |
Z5675 | 19 | GATGAGGGTGGGCTGGTTTG | 20 | TGACCCCTGTTTGACCAGTCTG | 22 | NA | NA | NA | NA |
| |
Z6045 | 19 | CTGCAGGCGCAAATATAACA | 20 | GGGGGGGCTAATAATTCTGA | 20 | 151 | 165 | 149 |
|
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Z6079 | 19 | TTGTCTCAATGCATCTTGCC | 20 | AATGCACAAATCGTGAGTAAAA | 22 | 280 |
| 290 |
|
| |
Z6192 | 19 | GCGCAGGACTACATCTCCTC | 20 | TGTCCTTAGGCTGCCTGTCT | 20 | 185 |
| 217 |
|
| |
Z6275 | 19 | TGCCATCTTCTCCTGCTGG | 19 | AAAGCAATGATTTTGCTTGTG | 21 | 239 | 271 | 239 | 245 |
| |
Z6412 | 19 | TGCAGAATCATATTCCTGTTCA | 22 | CAACAACTTCTGATTCATCTGG | 22 | 106 |
| 122 | 168 |
| |
Z6589 | 19 | TGTGCTGGAAAGCTCATCC | 19 | GTGCAGGGGAAGAACAAGAG | 20 | 249 |
| 239 | 255 |
| |
Z6661 | 19 | CCTCCAGGATCCTGCAGAAA | 20 | TTCTCTGACTGCCCTCGG | 18 | 154 |
| 138 | 142 |
| |
Z7007 | 19 | TTCAATGAAGATTGGCCTCC | 20 | TCTCAAATCATTCAGATAGAACCTT | 25 | ? |
| ? | ? |
| |
Z7058 | 19 | CTGCAGGCCCTGAACATC | 18 | AGAGTCTGTGTCAGCCGCTT | 20 | 163 |
| 147 | 173 |
| |
Z7235 | 19 | TGATTCAAAGCAGAGGCTGA | 20 | TTCAAGCACGGATTTGAAAA | 20 | NA | NA | NA | NA |
| |
Z7265 | 19 | GCAGCAACTAATTTGCATTTAA | 22 | GGTCTCAAGTGTCCCCAGAA | 20 | 155 | 191 | 159 | 195 |
| |
Z7338 | 19 | GGGAGAAGCAATGTTTGGAA | 20 | CATGTGCTCACACAACCACA | 20 | 276 |
| 266 |
|
| |
Z7430 | 19 | CTCGCCAGAGACATGTAGTCA | 21 | CCGGTGCTCATCTGGATC | 18 | 263 |
| 317 |
|
|
|
Z7450 | 19 | TCTCACTCATCCAGATCATCTATCA | 25 | TCACTGGTAAACACTGTCAGCA | 22 | 225 | 231 | 177 | 183 |
| |
Z7686 | 19 | CACCTCAGTCCTGTGAAGCA | 20 | CATGTTTGCTCCAAAGAGCA | 20 | 163 |
| 179 | 187 |
| |
Z7926 | 19 | GCATCTGTGCATGGGTACAG | 20 | AATCCATCGCATCTGTTTCC | 20 | 148 | 208 | 184 | 228 |
| |
Z7948 | 19 | GAACAGAGGACACCACTGCA | 20 | TCGACTCTTATTTGCTCCGTG | 21 | 221 |
| 211 | 255 |
| |
Z7964 | 19 | CCCATAATGCCTCTGCAGAT | 20 | TGAAAGGTATGATTGGAACCC | 21 | 186 |
| 234 |
|
| |
Z7981 | 19 | TTTTGCACGCACTTCTTCAC | 20 | TGCAGGATGTTTTATTCTGGG | 21 | 164 |
| 142 | 162 |
| |
Z8487 | 19 | CTGGGCAGATGAACCTGAG | 19 | GGCCTGCAGACTGGTACAGT | 20 | 254 |
| 204 | 230 |
| |
Z9050 | 19 | AATCATTCACTTTCACACGGC | 21 | TGTGAGTCATCAGTGGAAAACC | 22 | 118 |
| 114 | 140 |
| |
Z9059 | 19 | TTCCTGGCAATGTTGTTTTC | 20 | TGCTACTGTTGAAAACACGTCT | 22 | 252 | 258 | 186 | 246 |
| |
Z9252 | 19 | TGACAACACTCTGTCAGCACC | 21 | GCATACAAACAGGGGCAAGT | 20 | 193 |
| 201 | 205 |
| |
Z9331 | 19 | GGATAAATCCTGGCCTTTCC | 20 | CAGACACTGCAGAGCTCGAG | 20 | 275 |
| 269 | 289 |
| |
Z9384 | 19 | CACCTTTGCCTTGTTTGGAT | 20 | AGCATAATCAGACAACCGGG | 20 | 115 |
| 91 |
|
| |
Z9468 | 19 | CTGTTTCCATGGAGATGGCT | 20 | TCTGTATCTCTCACACGCGC | 20 | 157 |
| 161 | 179 |
| |
Z9512 | 19 | TGCACACACTCGCATGACA | 19 | ATGGCCTCTGTGCCTCTG | 18 | 160 | 164 | 162 | 180 |
| |
Z9595 | 19 | AAAAACACACATGCACGTGC | 20 | GTCTTTGCGTGTCTGTGCAT | 20 | ? |
| ? | ? |
| |
Z9861 | 19 | TCCACAGCATCGTCCAAAT | 19 | TGCAGTAAAGCGGCTCTGAC | 20 | 133 |
| 119 | 147 |
| |
Z9992 | 19 | CAGTTCATCAACACCCTGCA | 20 | GGCAGAGTGTGTTTTAGGTGTTC | 23 | 138 |
| 138 | 166 |
| |
Z10002 | 19 | CGACGGAGCTTACACAACAA | 20 | TGATGTCATTGCTCAAAGGG | 20 | 109 |
| 93 | 105 |
| |
Z10220 | 19 | GGAATTTCAGCACGGTGTTT | 20 | GCAGCATTTTCAGAATTGCA | 20 | 275 | 289 | 265 | 283 |
| |
Z10273 | 19 | CAGGGGTGTGGCTTATCTGT | 20 | TCAGCACTGCAGATCTCAGG | 20 | 144 |
| 132 | 148 |
| |
Z10885 | 19 | CCTCCGCTCCATTCAGAATA | 20 | CTCCTCCAATCAGATGTGCA | 20 | 198 |
| 148 |
|
| |
Z10996 | 19 | CCAGAACACAGGGCTTTCTT | 20 | CTTTTTCCTCTCGCGTTTTG | 20 | 139 |
| 159 | 165 |
| |
Z11027 | 19 | GCCTTATTTTAAAGAACGCGTG | 22 | GTAGCAATCAGCAGGGAAGC | 20 | 241 | 247 | 243 | 249 |
| |
Z11031 | 19 | TAACGGCATTCCTGAAATCC | 20 | CACCCAAGCCGCTCTATAAA | 20 | 281 |
| 265 | 271 |
| |
Z11380 | 19 | CTGTGCTCAAGAGGAGGGTC | 20 | AAAGCAGTTCTTTCCCGTGT | 20 | 92 |
| 108 |
|
| |
Z11403 | 19 | TTTGTTTTAAGCATTGCCGA | 20 | GCATTTTGACTCCACTGGGT | 20 | 177 | 253 | 169 |
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Z11506 | 19 | TGATGCGCTTGTTTTTAACG | 20 | CACTCAGATATGCGTTCATACAC | 23 | 296 |
| 292 |
|
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Z11872 | 19 | TGTGGAGGAAGAAGGAAACG | 20 | ATGTGGGAGTTTTGCACCTC | 20 | 135 | 183 | 133 | 143 |
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Z11989 | 19 | ATGTGTCGACGGTGTGAAAA | 20 | GCAAGAGTGTGTGCGTGC | 18 | 145 |
| 129 | 137 |
| |
Z13215 | 19 | GTGTTGATCCCCTGGGCA | 18 | ACAAGTCCCCACAAGGTCAA | 20 | 124 | 126 | 118 |
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Z13292 | 19 | CAAGGCTGGCGTTATCAGAT | 20 | GACCACCCACATAAACCCAC | 20 | 216 | 230 | 224 |
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Z13345 | 19 | TCTGGACTACACTTAACATCACTGC | 25 | CAAATCAAGACGCTCTTGCA | 20 | 134 | 136 | 142 | 144 |
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Z13509 | 19 | GTTTCTGGGCTCTGAAGACG | 20 | AAACAGAGCGTGATGCTCCT | 20 | 270 |
| 264 |
|
| |
Z13585 | 19 | ATTCCACAGCCATGTGTCCT | 20 | GATGTGCCACACCAACAGTC | 20 | 169 | 173 | 163 | 171 |
| |
Z13727 | 19 | AGGATGCAGGAGAGTGATGG | 20 | GGAACCATTAAGAGTCCGCA | 20 | 159 | 237 | 205 |
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| |
Z13773 | 19 | CCCTCTCCTCAACCATAGCA | 20 | CTGGCATGTAGCACCATACG | 20 | 103 |
| 111 | 115 |
| |
Z15451 | 19 | TTGCAGCTACATTTGCGTCT | 20 | TCAAGAATTGTGTTGTTCCAGC | 22 | ? |
| ? |
|
| |
Z20054 | 19 | TGGCTCCCTCACACATTACTC | 21 | TCATACTGGAGCAGCTGTGG | 20 | 124 |
| 88 |
|
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Z20396 | 19 | GCCCAAACCTGAGGGATACT | 20 | GAGCACTTCATGCAGGATCA | 20 | 142 |
| 166 |
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Z20773 | 19 | CAGCACAAATCATTGGCAAC | 20 | CCCAAAACACACATAAAAACAAA | 23 | 109 |
| 115 | 125 |
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Z21077 | 19 | CTTTGATACCACCCCAAACG | 20 | AGGCTCATCAATCCCACATC | 20 | 247 |
| 249 | 253 |
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Z21492 | 19 | TACGGCACGCAGATGTTAAA | 20 | CCACGAGTGTTTAGCTGCTG | 20 | 308 |
| 256 | 370 |
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Z21694 | 19 | GCCTCAGTTTCTGCAGATACTTTT | 24 | AGGAAAAGCGTGAAAGCTGA | 20 | 126 |
| 134 |
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Z22532 | 19 | GCTGGGAATAAAGGACACCA | 20 | CAGGTGCTGTTTTCAAGCAA | 20 | NA | NA | NA | NA |
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Z22649 | 19 | TGACGTCTGCAGTGAGATCC | 20 | TACACACACCAGGGGACTGA | 20 | NA | NA | NA | NA |
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Z22818 | 19 | AAGAATCCCGGGATGAAGTT | 20 | TACTCAGAGGCCCTGAAGGA | 20 | NA | NA | NA | NA |
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Legend
Table generated Wed Oct 7 16:28:07 1998
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