Linkage Group 2

Linkage Group 02 SSR Markers

We are in the process of submitting the sequences used to generate the SSR markers to the dbSTS database at NCBI. To view the entry for a specific sequence, use the link in the dbSTS Accession column. If no link is present, we are still preparing its entry for submission.

Marker Number	Linkage Group	Forward Primer Sequence	Length	Reverse Primer Sequence	Length	AB_1 Size	AB_2 Size	In_1 Size	In_2 Size	Comments	dbSTS Accession
Z3077A	2	TTAGCATAAGCAGCAGCCCTG	21	AGCGTACAGCCGGGGTTAGA	20	NA	NA	NA	NA
Z23	2	TGTAGATTAATGCTTTTCTGTGCA	24	GCATATGAAGCAGGTCTGCA	20	NA	NA	NA	NA
Z46	2	GCTGTGTGTGCCTCATCTGT	20	GCAGACGCTGTACTCCATCA	20	NA	NA	NA	NA
Z644	2	CACGGACAATCCAGTGTACG	20	GCAACAGTATAAGACTGTCTTGGG	24	144		140	146		G40440
Z851	2	ACAGTCTTTACTCCGCAATAATCC	24	ACTGAAGAGGAGGACCAGAGC	21	NA	NA	NA	NA		G41422
Z1159	2	CGCTAATGACTAGCGTGACG	20	ATAACCACAGTGATAAACGCA	21	140		130	186		G39933
Z1241	2	TGTTCCCAGCAGTGTATAAAACC	23	TACGTGACGCAGGAAAAGC	19	NA	NA	NA	NA		G39988
Z1406	2	CGCCCGTTGAGGATACAG	18	CACAGTTCACAAAGCGCACT	20	NA	NA	NA	NA		G41365
Z1484	2	TAGGCGGAGGAGACCTGCAC	20	CACCCTGATCAGTGAGTGCCC	21	NA	NA	NA	NA		G41382
Z1703	2	GCTAGCCAATGTAGTCGAAGGC	22	TTTCCAAGGGGTCAGTGAGC	20	166	170	160	NA
Z3430	2	AGAAACGCAAACGCCCACAT	20	TTTAAATGCAGCCCACGGCT	20	127		115
Z3551	2	TGTGGAAGGAGCTGTAGATGGA	22	TGGGTGGAGTTTATTCAAGCCT	22	254		n		Use at your own risk	G41450
Z3743	2	CATTGCACATGCAGCACATAAA	22	CTCATGGGGACTGAAAAATGCA	22	199		207
Z3754	2	TGTTTTCTTGAGCCCTGCTGG	21	CTCTCGAAAGAGCAGGTCGAGG	22	NA	NA	NA	NA		G41462
Z4278	2	ATCCTGTCCACTGCTGCATCA	21	ACATTGCTAATGAGTGGCGCC	21	NA	NA	NA	NA		G40357
Z4289	2	TCATTCAGTGACTCCGTCTCGC	22	ATGCAGCCCTCAGACGTTCC	20	238		246			G41496
Z4300	2	TTTGGTGCACAAATGAAGGCC	21	CAAAAAGGGCATCGGTGCAT	20	145	177	155			G41501
Z4349	2	GGGTAATGAAGCGTTTCTGTGG	22	CTCCGGAGATCAGCTTTGAGG	21	149		153	159		G41508
Z4382	2	TCGCTGGAACCACCATGTTG	20	ATCTGAACCGTCTGACCGCC	20	NA	NA	NA	NA		G41513
Z4469	2	TGAAGCACATTTCAGACCTGCC	22	TTACCAAAGCGCTAGCATGAAA	22	174		148			G41518
Z4585	2	TTGTCAAGTGTGGTTTCACCCA	22	TAGCTACCCGCTGCATTGGG	20	162		156	174		G41524
Z4586	2	GGTCCTCCAGGAACATGGTTG	21	TCTGCTGCAGGTCAAACAGAGC	22	NA	NA	NA	NA		G41525
Z4641	2	AGCGACTCTGATGAGCCAATCC	22	ACCTCCTGCACCTCCACGTC	20	248		n		Use at your own risk	G40368
Z4662	2	TCCTTTTCAAGGCAGTTGAGGC	22	AAGGCAGGAGGTGAGGACAGC	21	248		254			G41529
Z4733	2	CATTCCACTGTGGCTTGTGACC	22	AATTGCCAGATGGCCAGTCC	20	137		141			G41534
Z4875	2	CACTGGGGTAAGGTGACTGCG	21	TAGATATTCCCCCAAACCGCG	21	NA	NA	NA	NA		G41544
Z5481	2	TTCTGAGCCGTAGAACCGCA	20	CACTCACACTTTCTTTTGCGCG	22	NA	NA	NA	NA	Use at your own risk	G40392
Z5611	2	CGACACAACGGTGAGCTTGA	20	ATCATCCCTCATGAGCCCCA	20	NA	NA	NA	NA	Use at your own risk	G41591
Z6090	2	ATTTAGTCAGAGAGCCCGAGC	21	AAATTCTGAAGGCCTAAAAGGG	22	244		208	222		G41104
Z6122	2	TGTTGATCATCAGAGGCTGC	20	TAGGCCCAAATGAGTGCTG	19	99		121	127		G41105
Z6123	2	AGACGAGCATCAGTGTGACG	20	CCTGACTGTGCGCTAAATCA	20	107		95	99		G40405
Z6452	2	CCTTTGAATCGTCCTAACTCAC	22	CACAAATGCCGTTTGCAG	18	83		83	99		G41118
Z6569	2	CTGCTAAAATGGGTTTGAAAGC	22	ACAGACAGTTTCTGGCCCC	19	203	231	193	195		G40450
Z6617	2	ACCGATGGGAACAATAAAAGA	21	ATCGATGTATTGTGCAGTGTCC	22	146		136			G40458
Z6766	2	CTTTCCCTCCAGACTTGCTG	20	AGCACTGATTGTGCACAGATG	21	271		167	249		G40466
Z6818	2	CTGATGGGAGAGATTGACAGC	21	GAGGTGTGGAGGAAACTAAACG	22	157	239	201	275		G40471
Z6863	2	AGGTCTGATTCCTCATTTCCTG	22	CCTGGGTTGGAGTGATGATT	20	?		?			G40478
Z6985	2	CAGCATGGTTTGGGTAACCT	20	TGCATGCCAAACACAATTTT	20	?		?			G41135
Z7019	2	ACAAAATGACCTCCCCAACA	20	GCCTGATGGGAAACACACTT	20	?		?			G40493
Z7227	2	AGTGGACAGCAGCGATTCTT	20	TGGTTTGATAGGCAACATGTG	21	206		184			G40522
Z7358	2	ACGTTAACACCGATAACGGC	20	CGAATGATGCATTTCATTCC	20	260		248	256		G40549
Z7361	2	TTCCTTCTTCCTGTTGCGTT	20	TCTTGAAGGTTTGATTGGCC	20	135	155	151			G40550
Z7632	2	CTCTCTTAATGGAAGAGCAGCC	22	CAAGCCAGTCTGATGGAACA	20	218	310	208	238		G41152
Z7634	2	ATTGAGGAAGTGGGTGCAAC	20	TCACTTTCCCACCCTTCTTG	20	197		169	257		G41666
Z7678	2	CAGACTGACAGATACACGCACA	22	CGAGTGCTGCGTAGACTTACA	21	274		172			G41156
Z7841	2	GCGTTGCTGAAAATGATTGA	20	CACAACAACTCATCCTGCAAA	21	150		154	160		G40600
Z8110	2	TGATGAAGGAGGAATGGCAC	20	ACTCAGAGGAAACAGGCGAA	20	136		132			G40623
Z8407	2	CATCCTGCAGTCTGAACATCA	21	AGACCAAACCCACTGGTGAG	20	134		194	204		G40645
Z8448	2	ATGTGGGTAAGACTGGCAGG	20	AACCCATGCATCTGAAGAGG	20	153	167	175			G41676
Z8451	2	TTGCAACTTAGCGGACTGAA	20	GGCACGTGTCCATTGTGTAG	20	184	194	240	290		G40650
Z8517	2	CACAAAAAGGAACGGTGTCA	20	TGGCATAAACTTTGAGATGGC	21	226	250	202	262		G40662
Z9037	2	AGAGAGAGTTCTGGAGGACCG	21	TCGGTGTGGTCAAGAGAGC	19	145		137	155		G40715
Z9234	2	AGGACGCAGGAAGCGTTG	18	TTTGCAGACTGAGAGGTGACC	21	310		284	336		G40752
Z9354	2	ATTGGTTTGCCCTTGAACAG	20	TGCCTCATCAGCTGTAAGCT	20	235		229			G41646
Z9361	2	GCTGAGCACTTTCAACACCA	20	TGCTGGACAAGATTCTTTGG	20	217	249	187	201		G40775
Z9615	2	GACGGAGCTTGTAGTGGAGC	20	TTTGGAGTTGGCGAGTCTCT	20	305		299			G41653
Z9944	2	TGGATCACTTGCGATAACCA	20	AATCCCTATACGGCACCTCA	20	221		237	245		G41193
Z10021	2	TCACAGCATCAGGACTCTGG	20	GGATTCCATCAGGACCAATG	20	259		227	?		G39740
Z10050	2	CATTGATCGCGTTTGATTTG	20	CCGAGCAGAAATGAGCATCT	20	?		?			G39743
Z10302	2	AGTGGACCAAATTGCAGACC	20	GGGTCCATTCAGGTGTCTGT	20	112		124	?		G39776
Z10764	2	TCCTTTTCTCGCTCTCTCGA	20	GGTCACGAAAAGGAAACCAA	20	187		177	211		G41706
Z10838	2	TGGGCATTTGGATGTAACAA	20	CCCCTAAATTGGCACTTATGA	21	216		206	220		G39836
Z11023	2	CAGTGCTGCTTCGTGGTAAA	20	TGCAGTGCTGTAATTGAGGG	20	NA	NA	NA	NA		G38996
Z11066	2	TGGGTCAGTGTTACTGCAGC	20	GAGAGGGTGCAGTTTTGCTC	20	102		108	116		G39864
Z11132	2	TAGCTAGACGGACGGAAACG	20	CCTCAGCAAGTCAATGCAAA	20	234		238			G39874
Z11354	2	GATAAAGGACAGGCCAACGA	20	AAAACACCCTTCACCACAGC	20	?		?	?		G39896
Z11410	2	TGCAGATTTCTCTGACATTCTCA	23	AGAGAGCATCATTCAGCGGT	20	88		84	92		G41717
Z11415	2	GCTCTATGAGGCGTCCTTTG	20	CTCCAGTCTTTTCAGCAGGG	20	133		169			G41718
Z11863	2	TGATACCTGTCAGCGAGTGG	20	CTGAGCAAAACACTGTCCACA	21	239		153			G39966
Z13281	2	TCAATATTGCACTGACCCACA	21	CATGCTCAAACACGCTCACT	20	149	203	99	159		G41602
Z13361	2	ACTCGGTCCTGATGGATGAC	20	CAGTAAATAATAACACAAGCATGCG	25	187		127			G40013
Z13475	2	CTCTTCTCCCAGTGTGGAGC	20	CCAGCCTGCAGATCTTTTTA	20	184		184	204		G40027
Z13521	2	CATTGTCACACACATTCCTGG	21	CGTCACAGCTCAAGCTGAAG	20	281		183			G40032
Z13579	2	CAGCAGAAGGGAGTCAAAGG	20	GGCGATTTTAAAAGGCACTG	20	187		261			G40041
Z13620	2	GCGTCCCTGCTTACACTTTC	20	AAGATGCCGGAGCATTGTAG	20	251		223	225		G40046
Z13708	2	TCTCCCCTCAACAGAGCACT	20	CGTTCAGCAAATCCAGGTTT	20	278		240			G40064
Z15410	2	ACGCTCCTAAAACAGGCAGA	20	CAGACTGAGCTCCATTTCTGC	21	134		146			G41823
Z17291	2	TAGGAGTCAGTATATGCACCCG	22	AAGCTGGCACCAAACAGTG	19	257		245	289		G40141
Z20550	2	CGGTGTCACTGGGAGTTTTT	20	GCGTAAACACAGTCAGCGAG	20	279		297	319		G40183
Z20629	2	TGGAGGGAATGGAGAATACG	20	TTTGAGCTTGGAGGACAGCT	20	97		85	87		G40190
Z20656	2	TGCTCTCGGCAACACTATTG	20	TGCTGAGAAGAACAGCCAGA	20	258		256			G41733
Z21046	2	CTGAAGTCCATGCACTTTATCAG	23	CCTTTTGGGGGAATGAAAAT	20	165		163			G40218
Z21363	2	TGCATAAACAAACTCGCAGG	20	CCCTGGGCATGGTAATTAGA	20	238		232	234		G40243
Z21490	2	CCAGCCTACAAACACACCCT	20	TATTTCTTAGTGCCCGTGCC	20	222		158	232		G40259
Z21831	2	GCCTTTCTTCATGCAGAACC	20	TGGGACGGATATCCTACAGG	20	226		228	230		G40274
Z22147	2	GCTGATTGGCCAATTTGTTT	20	CAAGCCACAAGAGTCAGTGC	20	224		226			G40294
Z22527	2	GGTGTAGTTTGTGCCAGCCT	20	TGCTAAAGCTGTCTACGCGA	20	115		123			G40328
Z22544	2	TCATGTCCACCGTTCAGTGT	20	AATATCAGGTCATGCGCTCG	20	NA	NA	NA	NA		G39489
Z22747	2	GAAAGCATCAGCCTCTCCAC	20	GGCAGTGAGAGGGTTCATGT	20	NA	NA	NA	NA		G39516

Legend

Table generated Wed Oct 7 16:28:07 1998